Wall clock time and date at job start Wed Apr 1 2020 00:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.47375 * 2 1 4 4 C 1.50696 * 109.47365 * 239.99180 * 2 1 3 5 5 N 1.34777 * 120.00076 * 60.00522 * 4 2 1 6 6 O 1.21281 * 120.00074 * 240.00024 * 4 2 1 7 7 N 1.46902 * 109.47015 * 119.99273 * 2 1 3 8 8 C 1.50181 * 110.99875 * 69.87488 * 7 2 1 9 9 C 1.55812 * 106.40053 * 214.88251 * 8 7 2 10 10 C 1.51497 * 103.17917 * 353.90620 * 9 8 7 11 11 N 1.46504 * 111.06542 * 275.28334 * 10 9 8 12 12 C 1.34779 * 120.00164 * 298.98933 * 11 10 9 13 13 O 1.21286 * 119.99726 * 359.97438 * 12 11 10 14 14 C 1.50698 * 120.00208 * 180.02562 * 12 11 10 15 15 S 1.80998 * 109.47240 * 179.97438 * 14 12 11 16 16 C 1.76199 * 100.00131 * 179.97438 * 15 14 12 17 17 H 1.08002 * 119.99547 * 0.02562 * 16 15 14 18 18 C 1.38799 * 120.00181 * 179.97438 * 16 15 14 19 19 N 1.31627 * 120.00058 * 180.02562 * 18 16 15 20 20 Si 1.86796 * 119.99776 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47231 * 90.00064 * 20 18 16 22 22 H 1.48503 * 109.47122 * 210.00216 * 20 18 16 23 23 H 1.48504 * 109.47394 * 329.99749 * 20 18 16 24 24 C 1.51852 * 122.20725 * 141.02970 * 10 9 8 25 25 C 1.56849 * 101.67757 * 207.32201 * 24 10 9 26 26 C 1.55865 * 106.09879 * 24.48302 * 25 24 10 27 27 C 1.43875 * 111.00232 * 316.09884 * 7 2 1 28 28 H 1.09006 * 108.26220 * 53.43610 * 27 7 2 29 29 H 1.09004 * 109.46734 * 60.00944 * 1 2 3 30 30 H 1.08999 * 109.46725 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47260 * 300.00590 * 1 2 3 32 32 H 0.97001 * 120.00485 * 180.02562 * 5 4 2 33 33 H 0.97005 * 119.99790 * 359.72082 * 5 4 2 34 34 H 1.09005 * 110.07108 * 334.11240 * 8 7 2 35 35 H 1.08999 * 110.07077 * 95.59404 * 8 7 2 36 36 H 1.08998 * 110.68228 * 112.32831 * 9 8 7 37 37 H 1.09004 * 110.67343 * 235.48491 * 9 8 7 38 38 H 0.97000 * 120.00021 * 118.98329 * 11 10 9 39 39 H 1.09004 * 109.46520 * 299.99634 * 14 12 11 40 40 H 1.08994 * 109.47230 * 59.99132 * 14 12 11 41 41 H 0.97003 * 120.00203 * 179.97438 * 19 18 16 42 42 H 1.08997 * 110.92777 * 325.25514 * 24 10 9 43 43 H 1.09004 * 110.92530 * 88.91517 * 24 10 9 44 44 H 1.08997 * 109.69470 * 265.49979 * 25 24 10 45 45 H 1.08998 * 110.41312 * 143.84906 * 25 24 10 46 46 H 1.09001 * 110.47740 * 248.18966 * 26 25 24 47 47 H 1.08999 * 110.47884 * 125.56849 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2303 5 7 1.7069 -0.2502 -2.4545 6 8 2.7297 -1.6966 -1.1189 7 7 2.0197 -0.6924 1.1995 8 6 1.7442 -2.1666 1.1202 9 6 1.4309 -2.6344 2.5730 10 6 1.7070 -1.3966 3.4016 11 7 3.1292 -1.2948 3.7384 12 6 3.7205 -2.2632 4.4658 13 8 3.0751 -3.2187 4.8419 14 6 5.1832 -2.1583 4.8127 15 16 5.6768 -3.6003 5.7889 16 6 7.3796 -3.2275 6.0461 17 1 7.8017 -2.3214 5.6371 18 6 8.1781 -4.0977 6.7752 19 7 9.4500 -3.8190 6.9677 20 14 7.4477 -5.6645 7.4831 21 1 7.5823 -6.7642 6.4943 22 1 8.1693 -6.0280 8.7291 23 1 6.0109 -5.4468 7.7889 24 6 0.8370 -1.0021 4.5820 25 6 1.0308 0.5540 4.6132 26 6 1.4308 0.9689 3.1651 27 6 1.2791 -0.2900 2.3656 28 1 0.2177 -0.4318 2.1619 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 2.0300 -0.7078 -3.2465 33 1 1.1460 0.5361 -2.5436 34 1 0.8862 -2.3525 0.4741 35 1 2.6203 -2.6907 0.7383 36 1 0.3868 -2.9336 2.6643 37 1 2.0929 -3.4493 2.8660 38 1 3.6453 -0.5305 3.4378 39 1 5.7721 -2.1206 3.8962 40 1 5.3550 -1.2514 5.3924 41 1 10.0081 -4.4269 7.4776 42 1 -0.2063 -1.2599 4.4000 43 1 1.1961 -1.4639 5.5018 44 1 1.8273 0.8111 5.3115 45 1 0.1027 1.0470 4.9026 46 1 2.4642 1.3147 3.1392 47 1 0.7596 1.7417 2.7906 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717833710.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:16 Heat of formation + Delta-G solvation = -43.028032 kcal Electronic energy + Delta-G solvation = -28838.185480 eV Core-core repulsion = 24954.851251 eV Total energy + Delta-G solvation = -3883.334229 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -41.72754 -39.83205 -38.28333 -35.89304 -34.30979 -33.38022 -32.37124 -32.18365 -29.90310 -28.79073 -27.46709 -26.67412 -25.53309 -24.77742 -21.98256 -21.30174 -20.88704 -19.39587 -19.16104 -17.83507 -17.70684 -17.24087 -16.42959 -16.09402 -15.89410 -15.44478 -15.36994 -15.07752 -14.90558 -14.46326 -14.18189 -13.96758 -13.75320 -13.47047 -13.25582 -13.18351 -12.72990 -12.53364 -12.49335 -12.28677 -12.03213 -11.82458 -11.68023 -11.41025 -11.21501 -11.17638 -10.99762 -10.94263 -10.69507 -10.52013 -10.36060 -10.06321 -9.91782 -9.78321 -9.21975 -8.93749 -8.76246 -8.62564 -8.40545 -6.82252 -6.22104 -3.92411 2.30284 2.86202 2.98967 3.16141 3.33928 3.39084 3.52216 3.56202 3.81126 3.85867 4.33261 4.39657 4.47008 4.53588 4.63490 4.71506 4.83510 4.89617 4.93760 4.98580 5.02320 5.14448 5.17075 5.20421 5.26122 5.41594 5.45058 5.48370 5.55568 5.63044 5.74286 5.80776 5.91047 5.94520 6.00605 6.04061 6.15796 6.19331 6.31125 6.40791 6.53871 6.72799 6.88436 6.97289 7.87294 7.92918 8.01311 8.49351 8.70409 9.24437 10.87334 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016380 B = 0.002904 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.959576 B = 9638.620852 C =10458.143684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.050 3.950 3 H 0.111 0.889 4 C 0.519 3.481 5 N -0.858 5.858 6 O -0.519 6.519 7 N -0.470 5.470 8 C 0.048 3.952 9 C -0.134 4.134 10 C 0.176 3.824 11 N -0.707 5.707 12 C 0.534 3.466 13 O -0.522 6.522 14 C -0.123 4.123 15 S -0.142 6.142 16 C -0.519 4.519 17 H 0.087 0.913 18 C 0.095 3.905 19 N -0.882 5.882 20 Si 0.857 3.143 21 H -0.268 1.268 22 H -0.275 1.275 23 H -0.235 1.235 24 C -0.121 4.121 25 C -0.117 4.117 26 C -0.103 4.103 27 C 0.030 3.970 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.402 0.598 33 H 0.399 0.601 34 H 0.044 0.956 35 H 0.102 0.898 36 H 0.071 0.929 37 H 0.095 0.905 38 H 0.401 0.599 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.270 0.730 42 H 0.074 0.926 43 H 0.082 0.918 44 H 0.071 0.929 45 H 0.066 0.934 46 H 0.074 0.926 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.503 14.348 -16.698 32.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.062 4.062 3 H 0.129 0.871 4 C 0.303 3.697 5 N -0.423 5.423 6 O -0.393 6.393 7 N -0.193 5.193 8 C -0.079 4.079 9 C -0.173 4.173 10 C 0.088 3.912 11 N -0.361 5.361 12 C 0.320 3.680 13 O -0.398 6.398 14 C -0.273 4.273 15 S 0.084 5.916 16 C -0.667 4.667 17 H 0.105 0.895 18 C -0.114 4.114 19 N -0.519 5.519 20 Si 0.682 3.318 21 H -0.193 1.193 22 H -0.201 1.201 23 H -0.159 1.159 24 C -0.160 4.160 25 C -0.155 4.155 26 C -0.141 4.141 27 C -0.080 4.080 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.233 0.767 33 H 0.227 0.773 34 H 0.063 0.937 35 H 0.120 0.880 36 H 0.090 0.910 37 H 0.114 0.886 38 H 0.236 0.764 39 H 0.114 0.886 40 H 0.112 0.888 41 H 0.080 0.920 42 H 0.092 0.908 43 H 0.100 0.900 44 H 0.090 0.910 45 H 0.085 0.915 46 H 0.093 0.907 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -23.366 12.200 -15.696 30.678 hybrid contribution -0.016 0.992 -0.911 1.347 sum -23.382 13.192 -16.607 31.568 Atomic orbital electron populations 1.22457 0.95285 1.03347 1.03490 1.21919 0.94244 0.99888 0.90159 0.87079 1.20470 0.79894 0.84425 0.84951 1.43862 1.56179 1.34132 1.08079 1.90801 1.36510 1.25678 1.86271 1.64462 1.50931 1.04476 0.99435 1.23788 1.01624 0.86806 0.95634 1.22414 1.02414 0.98727 0.93719 1.21025 0.82293 0.94804 0.93082 1.45661 1.09327 1.25359 1.55761 1.20169 0.88832 0.81923 0.77042 1.90667 1.65214 1.31514 1.52356 1.23272 0.94589 1.04953 1.04529 1.84721 1.12112 1.27448 1.67296 1.22341 0.92136 1.12061 1.40117 0.89456 1.24714 0.94133 0.97878 0.94650 1.69943 1.05148 1.37463 1.39379 0.86728 0.81932 0.83659 0.79479 1.19256 1.20065 1.15908 1.22377 0.99039 0.95427 0.99144 1.22944 1.01600 0.95178 0.95765 1.21416 1.02515 0.95499 0.94650 1.22580 0.97346 0.97001 0.91109 0.92450 0.91442 0.91634 0.90377 0.76671 0.77278 0.93742 0.87997 0.91007 0.88621 0.76355 0.88612 0.88760 0.92028 0.90783 0.89971 0.91023 0.91517 0.90711 0.91486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.94 7.94 37.16 0.30 -0.65 16 2 C 0.05 0.37 3.09 -68.86 -0.21 0.16 16 3 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 4 C 0.52 4.68 6.95 -10.99 -0.08 4.60 16 5 N -0.86 -4.10 8.77 31.22 0.27 -3.83 16 6 O -0.52 -7.22 14.47 5.56 0.08 -7.14 16 7 N -0.47 -4.76 5.17 -216.61 -1.12 -5.88 16 8 C 0.05 0.58 4.78 -0.48 0.00 0.57 16 9 C -0.13 -1.73 6.07 -25.99 -0.16 -1.89 16 10 C 0.18 2.08 0.43 -130.70 -0.06 2.02 16 11 N -0.71 -9.75 4.50 -46.57 -0.21 -9.96 16 12 C 0.53 9.77 7.24 -10.99 -0.08 9.69 16 13 O -0.52 -11.17 13.98 5.55 0.08 -11.09 16 14 C -0.12 -2.49 6.16 36.00 0.22 -2.27 16 15 S -0.14 -3.70 18.55 -107.50 -1.99 -5.69 16 16 C -0.52 -15.35 10.04 30.94 0.31 -15.04 16 17 H 0.09 2.70 8.03 -52.49 -0.42 2.28 16 18 C 0.09 2.83 5.50 -17.43 -0.10 2.74 16 19 N -0.88 -27.24 13.97 55.49 0.78 -26.46 16 20 Si 0.86 22.32 27.74 -169.99 -4.71 17.61 16 21 H -0.27 -6.91 7.11 56.52 0.40 -6.50 16 22 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.24 -6.10 6.74 56.52 0.38 -5.72 16 24 C -0.12 -1.31 6.27 -25.23 -0.16 -1.46 16 25 C -0.12 -0.98 6.75 -23.12 -0.16 -1.13 16 26 C -0.10 -0.77 6.30 -26.74 -0.17 -0.93 16 27 C 0.03 0.26 1.22 -68.40 -0.08 0.18 16 28 H 0.06 0.46 5.44 -51.93 -0.28 0.18 16 29 H 0.07 0.19 7.56 -51.93 -0.39 -0.21 16 30 H 0.06 0.41 6.55 -51.93 -0.34 0.07 16 31 H 0.08 0.37 6.24 -51.93 -0.32 0.04 16 32 H 0.40 1.74 8.93 -40.82 -0.36 1.38 16 33 H 0.40 0.64 8.24 -40.82 -0.34 0.30 16 34 H 0.04 0.49 5.95 -51.93 -0.31 0.18 16 35 H 0.10 1.56 6.79 -51.93 -0.35 1.21 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.10 1.57 6.25 -51.93 -0.32 1.25 16 38 H 0.40 4.94 7.84 -40.82 -0.32 4.62 16 39 H 0.10 1.88 8.14 -51.91 -0.42 1.46 16 40 H 0.09 1.78 8.14 -51.92 -0.42 1.36 16 41 H 0.27 7.74 8.31 -40.82 -0.34 7.40 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.08 1.11 7.76 -51.93 -0.40 0.71 16 44 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.07 0.59 7.63 -51.93 -0.40 0.19 16 47 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 373.50 15.07 5.63 5.63 Total: -1.00 -36.68 373.50 -8.73 -45.41 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -7.10 Total: 4.83 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: -0.42 Total: -3.42 kcal Atomic # 7 Polarization: -45.85 SS G_CDS: -0.28 Total: -46.13 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: 0.16 Total: -18.24 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.71 Total: 17.61 kcal Atomic # 16 Polarization: -3.70 SS G_CDS: -1.99 Total: -5.69 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.68 -8.73 -45.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717833710.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.378 kcal (2) G-P(sol) polarization free energy of solvation -36.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds