Wall clock time and date at job start Wed Apr 1 2020 00:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.47375 * 2 1 4 4 C 1.50696 * 109.47365 * 239.99180 * 2 1 3 5 5 N 1.34777 * 120.00076 * 60.00522 * 4 2 1 6 6 O 1.21281 * 120.00074 * 240.00024 * 4 2 1 7 7 N 1.46902 * 109.47015 * 119.99273 * 2 1 3 8 8 C 1.50181 * 110.99875 * 69.87488 * 7 2 1 9 9 C 1.55812 * 106.40053 * 214.88251 * 8 7 2 10 10 C 1.51497 * 103.17917 * 353.90620 * 9 8 7 11 11 N 1.46504 * 111.06542 * 275.28334 * 10 9 8 12 12 C 1.34779 * 120.00164 * 298.98933 * 11 10 9 13 13 O 1.21286 * 119.99726 * 359.97438 * 12 11 10 14 14 C 1.50698 * 120.00208 * 180.02562 * 12 11 10 15 15 S 1.80998 * 109.47240 * 179.97438 * 14 12 11 16 16 C 1.76199 * 100.00131 * 179.97438 * 15 14 12 17 17 H 1.08002 * 119.99547 * 0.02562 * 16 15 14 18 18 C 1.38799 * 120.00181 * 179.97438 * 16 15 14 19 19 N 1.31627 * 120.00058 * 180.02562 * 18 16 15 20 20 Si 1.86796 * 119.99776 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47231 * 90.00064 * 20 18 16 22 22 H 1.48503 * 109.47122 * 210.00216 * 20 18 16 23 23 H 1.48504 * 109.47394 * 329.99749 * 20 18 16 24 24 C 1.51852 * 122.20725 * 141.02970 * 10 9 8 25 25 C 1.56849 * 101.67757 * 207.32201 * 24 10 9 26 26 C 1.55865 * 106.09879 * 24.48302 * 25 24 10 27 27 C 1.43875 * 111.00232 * 316.09884 * 7 2 1 28 28 H 1.09006 * 108.26220 * 53.43610 * 27 7 2 29 29 H 1.09004 * 109.46734 * 60.00944 * 1 2 3 30 30 H 1.08999 * 109.46725 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47260 * 300.00590 * 1 2 3 32 32 H 0.97001 * 120.00485 * 180.02562 * 5 4 2 33 33 H 0.97005 * 119.99790 * 359.72082 * 5 4 2 34 34 H 1.09005 * 110.07108 * 334.11240 * 8 7 2 35 35 H 1.08999 * 110.07077 * 95.59404 * 8 7 2 36 36 H 1.08998 * 110.68228 * 112.32831 * 9 8 7 37 37 H 1.09004 * 110.67343 * 235.48491 * 9 8 7 38 38 H 0.97000 * 120.00021 * 118.98329 * 11 10 9 39 39 H 1.09004 * 109.46520 * 299.99634 * 14 12 11 40 40 H 1.08994 * 109.47230 * 59.99132 * 14 12 11 41 41 H 0.97003 * 120.00203 * 179.97438 * 19 18 16 42 42 H 1.08997 * 110.92777 * 325.25514 * 24 10 9 43 43 H 1.09004 * 110.92530 * 88.91517 * 24 10 9 44 44 H 1.08997 * 109.69470 * 265.49979 * 25 24 10 45 45 H 1.08998 * 110.41312 * 143.84906 * 25 24 10 46 46 H 1.09001 * 110.47740 * 248.18966 * 26 25 24 47 47 H 1.08999 * 110.47884 * 125.56849 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2303 5 7 1.7069 -0.2502 -2.4545 6 8 2.7297 -1.6966 -1.1189 7 7 2.0197 -0.6924 1.1995 8 6 1.7442 -2.1666 1.1202 9 6 1.4309 -2.6344 2.5730 10 6 1.7070 -1.3966 3.4016 11 7 3.1292 -1.2948 3.7384 12 6 3.7205 -2.2632 4.4658 13 8 3.0751 -3.2187 4.8419 14 6 5.1832 -2.1583 4.8127 15 16 5.6768 -3.6003 5.7889 16 6 7.3796 -3.2275 6.0461 17 1 7.8017 -2.3214 5.6371 18 6 8.1781 -4.0977 6.7752 19 7 9.4500 -3.8190 6.9677 20 14 7.4477 -5.6645 7.4831 21 1 7.5823 -6.7642 6.4943 22 1 8.1693 -6.0280 8.7291 23 1 6.0109 -5.4468 7.7889 24 6 0.8370 -1.0021 4.5820 25 6 1.0308 0.5540 4.6132 26 6 1.4308 0.9689 3.1651 27 6 1.2791 -0.2900 2.3656 28 1 0.2177 -0.4318 2.1619 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 2.0300 -0.7078 -3.2465 33 1 1.1460 0.5361 -2.5436 34 1 0.8862 -2.3525 0.4741 35 1 2.6203 -2.6907 0.7383 36 1 0.3868 -2.9336 2.6643 37 1 2.0929 -3.4493 2.8660 38 1 3.6453 -0.5305 3.4378 39 1 5.7721 -2.1206 3.8962 40 1 5.3550 -1.2514 5.3924 41 1 10.0081 -4.4269 7.4776 42 1 -0.2063 -1.2599 4.4000 43 1 1.1961 -1.4639 5.5018 44 1 1.8273 0.8111 5.3115 45 1 0.1027 1.0470 4.9026 46 1 2.4642 1.3147 3.1392 47 1 0.7596 1.7417 2.7906 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717833710.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:15 Heat of formation + Delta-G solvation = -74.224283 kcal Electronic energy + Delta-G solvation = -28839.538251 eV Core-core repulsion = 24954.851251 eV Total energy + Delta-G solvation = -3884.687000 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.58905 -40.71118 -39.52612 -36.70062 -34.96525 -34.68562 -34.41270 -33.19108 -30.86444 -30.05411 -28.14742 -27.88439 -27.50304 -25.40047 -22.93082 -22.41291 -21.59145 -20.33508 -20.15823 -19.76423 -18.32366 -17.99568 -17.82480 -17.12502 -16.97056 -16.79266 -16.54360 -16.12718 -16.06084 -15.64918 -15.51110 -15.07515 -14.83100 -14.80132 -14.46082 -14.20287 -14.04709 -13.53344 -13.35939 -13.34746 -13.13905 -13.03075 -12.90578 -12.70291 -12.46199 -12.33736 -12.19704 -12.13989 -11.87924 -11.81255 -11.41386 -11.24982 -11.17822 -10.75135 -10.65760 -10.59919 -10.53506 -9.98102 -9.36145 -8.98873 -8.52182 -6.22348 0.99051 1.30699 1.46238 1.55967 1.65535 1.67261 2.22938 2.26897 2.46402 2.70650 2.76707 2.85872 3.09376 3.70776 3.83847 3.88567 3.92289 4.05457 4.10992 4.17231 4.18727 4.23233 4.34640 4.36617 4.44643 4.47101 4.52094 4.64846 4.71436 4.82507 4.85229 4.89032 5.05732 5.09547 5.17459 5.21317 5.23401 5.36938 5.40786 5.65225 5.70277 5.77955 5.91782 6.08964 6.10537 6.51196 6.59555 6.92853 7.31285 7.39184 8.60639 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016380 B = 0.002904 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.959576 B = 9638.620852 C =10458.143684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.050 3.950 3 H 0.136 0.864 4 C 0.512 3.488 5 N -0.836 5.836 6 O -0.579 6.579 7 N -0.487 5.487 8 C 0.062 3.938 9 C -0.135 4.135 10 C 0.156 3.844 11 N -0.685 5.685 12 C 0.537 3.463 13 O -0.557 6.557 14 C -0.111 4.111 15 S -0.170 6.170 16 C -0.530 4.530 17 H 0.059 0.941 18 C 0.045 3.955 19 N -0.918 5.918 20 Si 0.916 3.084 21 H -0.264 1.264 22 H -0.257 1.257 23 H -0.236 1.236 24 C -0.122 4.122 25 C -0.110 4.110 26 C -0.097 4.097 27 C 0.048 3.952 28 H 0.077 0.923 29 H 0.096 0.904 30 H 0.051 0.949 31 H 0.091 0.909 32 H 0.406 0.594 33 H 0.418 0.582 34 H 0.054 0.946 35 H 0.061 0.939 36 H 0.087 0.913 37 H 0.052 0.948 38 H 0.411 0.589 39 H 0.101 0.899 40 H 0.110 0.890 41 H 0.277 0.723 42 H 0.093 0.907 43 H 0.047 0.953 44 H 0.059 0.941 45 H 0.091 0.909 46 H 0.071 0.929 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.546 16.836 -17.804 36.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.061 4.061 3 H 0.153 0.847 4 C 0.297 3.703 5 N -0.401 5.401 6 O -0.458 6.458 7 N -0.210 5.210 8 C -0.065 4.065 9 C -0.174 4.174 10 C 0.070 3.930 11 N -0.337 5.337 12 C 0.323 3.677 13 O -0.436 6.436 14 C -0.262 4.262 15 S 0.057 5.943 16 C -0.677 4.677 17 H 0.077 0.923 18 C -0.160 4.160 19 N -0.556 5.556 20 Si 0.738 3.262 21 H -0.189 1.189 22 H -0.181 1.181 23 H -0.160 1.160 24 C -0.161 4.161 25 C -0.148 4.148 26 C -0.135 4.135 27 C -0.062 4.062 28 H 0.094 0.906 29 H 0.114 0.886 30 H 0.070 0.930 31 H 0.109 0.891 32 H 0.237 0.763 33 H 0.250 0.750 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.106 0.894 37 H 0.071 0.929 38 H 0.247 0.753 39 H 0.119 0.881 40 H 0.128 0.872 41 H 0.087 0.913 42 H 0.111 0.889 43 H 0.066 0.934 44 H 0.078 0.922 45 H 0.109 0.891 46 H 0.090 0.910 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -26.443 14.779 -16.856 34.667 hybrid contribution 0.883 0.348 -0.736 1.201 sum -25.561 15.126 -17.593 34.520 Atomic orbital electron populations 1.22447 0.92906 1.03081 1.05604 1.22057 0.96039 1.00046 0.87980 0.84681 1.20903 0.79179 0.83783 0.86463 1.43699 1.55164 1.34192 1.07016 1.90799 1.39432 1.28383 1.87176 1.64351 1.52207 1.03229 1.01217 1.23463 1.00103 0.88242 0.94712 1.22361 1.02300 0.97994 0.94698 1.21347 0.80768 0.95972 0.94944 1.45460 1.10545 1.24077 1.53657 1.19790 0.87788 0.82465 0.77687 1.90655 1.65600 1.33097 1.54209 1.23262 0.96405 1.02623 1.03889 1.84605 1.09639 1.31178 1.68902 1.22478 0.94159 1.11175 1.39909 0.92267 1.25579 0.94522 1.00959 0.94977 1.70019 1.06364 1.38954 1.40288 0.85846 0.81198 0.79727 0.79454 1.18858 1.18077 1.15995 1.22386 0.99574 0.97309 0.96789 1.22923 1.02502 0.93062 0.96343 1.21461 1.03314 0.95294 0.93426 1.22578 0.98012 0.96242 0.89319 0.90579 0.88567 0.93028 0.89075 0.76272 0.75046 0.92775 0.92067 0.89399 0.92883 0.75269 0.88074 0.87175 0.91339 0.88875 0.93391 0.92187 0.89080 0.91011 0.88093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.03 7.94 71.98 0.57 -0.46 16 2 C 0.05 0.58 3.09 44.17 0.14 0.72 16 3 H 0.14 0.97 8.14 -2.39 -0.02 0.95 16 4 C 0.51 8.44 6.95 87.66 0.61 9.05 16 5 N -0.84 -5.97 8.77 -173.53 -1.52 -7.49 16 6 O -0.58 -16.46 14.47 -3.03 -0.04 -16.51 16 7 N -0.49 -8.97 5.17 -839.22 -4.34 -13.31 16 8 C 0.06 1.50 4.78 86.63 0.41 1.92 16 9 C -0.13 -3.53 6.07 31.07 0.19 -3.34 16 10 C 0.16 3.55 0.43 4.33 0.00 3.56 16 11 N -0.68 -18.78 4.50 -419.63 -1.89 -20.67 16 12 C 0.54 20.12 7.24 87.66 0.63 20.75 16 13 O -0.56 -24.71 13.98 -3.05 -0.04 -24.76 16 14 C -0.11 -4.59 6.16 71.24 0.44 -4.15 16 15 S -0.17 -9.03 18.55 -56.49 -1.05 -10.08 16 16 C -0.53 -32.21 10.04 67.95 0.68 -31.53 16 17 H 0.06 3.81 8.03 -2.91 -0.02 3.79 16 18 C 0.04 2.73 5.50 84.86 0.47 3.19 16 19 N -0.92 -57.65 13.97 21.65 0.30 -57.35 16 20 Si 0.92 46.64 27.74 68.60 1.90 48.54 16 21 H -0.26 -13.17 7.11 99.48 0.71 -12.47 16 22 H -0.26 -12.15 7.11 99.48 0.71 -11.44 16 23 H -0.24 -11.98 6.74 99.48 0.67 -11.31 16 24 C -0.12 -2.44 6.27 31.57 0.20 -2.24 16 25 C -0.11 -1.49 6.75 32.93 0.22 -1.27 16 26 C -0.10 -1.03 6.30 30.59 0.19 -0.84 16 27 C 0.05 0.70 1.22 46.08 0.06 0.76 16 28 H 0.08 0.88 5.44 -2.38 -0.01 0.87 16 29 H 0.10 0.02 7.56 -2.39 -0.02 0.00 16 30 H 0.05 0.48 6.55 -2.39 -0.02 0.46 16 31 H 0.09 0.33 6.24 -2.39 -0.01 0.32 16 32 H 0.41 2.80 8.93 -92.71 -0.83 1.97 16 33 H 0.42 -0.22 8.24 -92.70 -0.76 -0.98 16 34 H 0.05 1.17 5.95 -2.38 -0.01 1.16 16 35 H 0.06 2.01 6.79 -2.39 -0.02 2.00 16 36 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.05 1.86 6.25 -2.38 -0.01 1.84 16 38 H 0.41 9.72 7.84 -92.71 -0.73 9.00 16 39 H 0.10 4.07 8.14 -2.39 -0.02 4.05 16 40 H 0.11 4.19 8.14 -2.40 -0.02 4.17 16 41 H 0.28 16.04 8.31 -92.71 -0.77 15.27 16 42 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.05 1.30 7.76 -2.38 -0.02 1.28 16 44 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 46 H 0.07 0.86 7.63 -2.39 -0.02 0.84 16 47 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 Total: -1.00 -84.87 373.50 -3.19 -88.07 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -1.33 Total: 17.42 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: 4.81 Total: -3.87 kcal Atomic # 7 Polarization: -91.37 SS G_CDS: -7.45 Total: -98.81 kcal Atomic # 8 Polarization: -41.18 SS G_CDS: -0.09 Total: -41.26 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 1.90 Total: 48.54 kcal Atomic # 16 Polarization: -9.03 SS G_CDS: -1.05 Total: -10.08 kcal Total: -84.87 -3.19 -88.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717833710.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.841 kcal (2) G-P(sol) polarization free energy of solvation -84.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds