Wall clock time and date at job start Wed Apr 1 2020 00:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47251 * 2 1 4 4 C 1.50700 * 109.47071 * 239.99596 * 2 1 3 5 5 N 1.34777 * 119.99802 * 86.94134 * 4 2 1 6 6 O 1.21283 * 119.99985 * 267.21322 * 4 2 1 7 7 N 1.46900 * 109.46922 * 119.99548 * 2 1 3 8 8 C 1.50182 * 111.00108 * 178.09430 * 7 2 1 9 9 C 1.55200 * 106.38224 * 145.50444 * 8 7 2 10 10 C 1.51488 * 103.46787 * 5.52733 * 9 8 7 11 11 N 1.46502 * 111.06478 * 85.22993 * 10 9 8 12 12 C 1.34777 * 120.00046 * 70.04999 * 11 10 9 13 13 O 1.21279 * 119.99628 * 359.97438 * 12 11 10 14 14 C 1.50689 * 120.00111 * 180.02562 * 12 11 10 15 15 S 1.80998 * 109.47334 * 179.97438 * 14 12 11 16 16 C 1.76194 * 100.00405 * 180.02562 * 15 14 12 17 17 H 1.08001 * 119.99934 * 359.97438 * 16 15 14 18 18 C 1.38804 * 120.00437 * 180.02562 * 16 15 14 19 19 N 1.31630 * 119.99642 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00464 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47282 * 89.99752 * 20 18 16 22 22 H 1.48496 * 109.47445 * 210.00290 * 20 18 16 23 23 H 1.48514 * 109.46924 * 329.99778 * 20 18 16 24 24 C 1.51845 * 122.64575 * 219.97893 * 10 9 8 25 25 C 1.56195 * 101.98089 * 153.08934 * 24 10 9 26 26 C 1.55854 * 105.85382 * 334.79890 * 25 24 10 27 27 C 1.43872 * 111.00332 * 291.87898 * 7 2 1 28 28 H 1.09001 * 108.27292 * 306.56953 * 27 7 2 29 29 H 1.08999 * 109.46915 * 60.00009 * 1 2 3 30 30 H 1.09004 * 109.47251 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47377 * 299.99960 * 1 2 3 32 32 H 0.96997 * 120.00171 * 0.02562 * 5 4 2 33 33 H 0.97001 * 120.00122 * 179.97438 * 5 4 2 34 34 H 1.08998 * 110.07448 * 264.36099 * 8 7 2 35 35 H 1.08999 * 110.06788 * 25.89112 * 8 7 2 36 36 H 1.08999 * 110.08219 * 247.21875 * 9 8 7 37 37 H 1.09006 * 111.13492 * 124.32637 * 9 8 7 38 38 H 0.96999 * 119.99736 * 250.05558 * 11 10 9 39 39 H 1.08994 * 109.47556 * 299.99684 * 14 12 11 40 40 H 1.09003 * 109.47757 * 59.99999 * 14 12 11 41 41 H 0.97003 * 119.99881 * 180.02562 * 19 18 16 42 42 H 1.09002 * 110.92851 * 271.26089 * 24 10 9 43 43 H 1.09002 * 110.92820 * 34.91850 * 24 10 9 44 44 H 1.09004 * 110.16904 * 93.89930 * 25 24 10 45 45 H 1.08999 * 110.17168 * 215.62360 * 25 24 10 46 46 H 1.09002 * 110.48119 * 234.85747 * 26 25 24 47 47 H 1.08998 * 110.47680 * 112.24028 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 7 2.1982 -0.0292 -2.3814 6 8 2.2826 -1.8964 -1.1862 7 7 2.0196 -0.6924 1.1995 8 6 3.5202 -0.7530 1.2112 9 6 3.9514 -0.6366 2.6975 10 6 2.6363 -0.6574 3.4491 11 7 2.1935 -2.0316 3.6978 12 6 2.8584 -2.8048 4.5790 13 8 3.8235 -2.3630 5.1657 14 6 2.4034 -4.2185 4.8343 15 16 3.4913 -4.9909 6.0574 16 6 2.7512 -6.5865 6.1609 17 1 1.8840 -6.8195 5.5608 18 6 3.2820 -7.5438 7.0144 19 7 4.3387 -7.2597 7.7462 20 14 2.4970 -9.2352 7.1247 21 1 3.1233 -10.1377 6.1255 22 1 2.7014 -9.7879 8.4877 23 1 1.0420 -9.1245 6.8485 24 6 2.3662 0.2289 4.6522 25 6 0.8123 0.3789 4.6021 26 6 0.4108 0.1561 3.1128 27 6 1.7196 0.0606 2.3882 28 1 2.1061 1.0716 2.2589 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.9946 0.9185 -2.4177 33 1 2.5219 -0.4864 -3.1733 34 1 3.8594 -1.7048 0.8025 35 1 3.9323 0.0721 0.6303 36 1 4.4744 0.3053 2.8628 37 1 4.5765 -1.4795 2.9925 38 1 1.4219 -2.3850 3.2281 39 1 1.3810 -4.2086 5.2119 40 1 2.4418 -4.7862 3.9046 41 1 4.7099 -7.9288 8.3424 42 1 2.6807 -0.2599 5.5743 43 1 2.8547 1.1969 4.5401 44 1 0.3415 -0.3734 5.2350 45 1 0.5205 1.3779 4.9260 46 1 -0.1687 1.0022 2.7433 47 1 -0.1535 -0.7701 3.0044 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717833711.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:21 Heat of formation + Delta-G solvation = -51.434553 kcal Electronic energy + Delta-G solvation = -28680.526943 eV Core-core repulsion = 24796.828181 eV Total energy + Delta-G solvation = -3883.698763 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -41.56576 -39.74430 -38.19526 -35.73311 -34.14930 -33.52896 -32.40924 -32.34500 -29.90392 -28.66627 -27.62190 -26.68430 -25.39584 -24.25136 -21.87127 -21.32350 -20.65629 -19.89377 -19.04696 -17.85411 -17.63557 -17.24800 -16.41965 -16.18737 -15.63700 -15.44692 -15.29472 -14.83954 -14.73726 -14.40400 -14.19827 -13.92983 -13.79608 -13.54196 -13.04183 -12.80513 -12.70686 -12.61923 -12.51367 -12.23693 -11.92247 -11.78437 -11.70182 -11.32825 -11.19589 -11.00390 -10.95111 -10.89330 -10.69744 -10.68422 -10.41460 -10.03043 -9.99704 -9.73189 -9.14049 -8.99874 -8.78838 -8.64974 -8.14276 -6.40835 -6.14877 -3.83973 2.31468 2.96335 3.12915 3.26894 3.28346 3.32377 3.35797 3.47330 3.84897 3.88055 4.27867 4.37244 4.57750 4.58536 4.67018 4.72950 4.82427 4.93421 5.07936 5.15056 5.17450 5.18681 5.20281 5.32573 5.33950 5.44055 5.50718 5.57219 5.62701 5.79089 5.81414 5.81825 5.91758 6.00170 6.03472 6.08890 6.18111 6.25124 6.29294 6.37930 6.48431 6.71086 6.93863 6.99188 7.66999 7.95498 7.96904 8.42683 8.81556 9.30717 10.92567 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015038 B = 0.002801 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.480689 B = 9992.644905 C =10804.789396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.055 3.945 3 H 0.060 0.940 4 C 0.518 3.482 5 N -0.860 5.860 6 O -0.514 6.514 7 N -0.470 5.470 8 C 0.040 3.960 9 C -0.126 4.126 10 C 0.177 3.823 11 N -0.710 5.710 12 C 0.536 3.464 13 O -0.521 6.521 14 C -0.152 4.152 15 S -0.060 6.060 16 C -0.533 4.533 17 H 0.072 0.928 18 C 0.073 3.927 19 N -0.869 5.869 20 Si 0.918 3.082 21 H -0.277 1.277 22 H -0.283 1.283 23 H -0.272 1.272 24 C -0.121 4.121 25 C -0.116 4.116 26 C -0.102 4.102 27 C 0.040 3.960 28 H 0.046 0.954 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.399 0.601 33 H 0.402 0.598 34 H 0.092 0.908 35 H 0.045 0.955 36 H 0.074 0.926 37 H 0.091 0.909 38 H 0.402 0.598 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.267 0.733 42 H 0.087 0.913 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.066 0.934 46 H 0.067 0.933 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.960 22.874 -18.289 30.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.057 4.057 3 H 0.078 0.922 4 C 0.301 3.699 5 N -0.425 5.425 6 O -0.387 6.387 7 N -0.194 5.194 8 C -0.087 4.087 9 C -0.165 4.165 10 C 0.089 3.911 11 N -0.365 5.365 12 C 0.322 3.678 13 O -0.395 6.395 14 C -0.303 4.303 15 S 0.166 5.834 16 C -0.681 4.681 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.504 5.504 20 Si 0.744 3.256 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.197 1.197 24 C -0.160 4.160 25 C -0.155 4.155 26 C -0.140 4.140 27 C -0.070 4.070 28 H 0.064 0.936 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.227 0.773 33 H 0.233 0.767 34 H 0.110 0.890 35 H 0.063 0.937 36 H 0.092 0.908 37 H 0.109 0.891 38 H 0.237 0.763 39 H 0.105 0.895 40 H 0.107 0.893 41 H 0.077 0.923 42 H 0.105 0.895 43 H 0.092 0.908 44 H 0.090 0.910 45 H 0.084 0.916 46 H 0.086 0.914 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.367 22.226 -16.972 28.919 hybrid contribution -1.549 -0.582 -1.452 2.201 sum -8.916 21.644 -18.424 29.789 Atomic orbital electron populations 1.21833 0.91509 1.04031 1.02709 1.21841 0.98004 0.95741 0.90113 0.92192 1.20485 0.77130 0.87638 0.84666 1.43918 1.71262 1.14071 1.13268 1.90804 1.48454 1.15040 1.84389 1.64195 1.10596 1.45493 0.99110 1.23622 0.85831 1.02318 0.96887 1.22178 0.97374 1.03784 0.93152 1.20980 0.93414 0.83026 0.93656 1.45732 1.33980 1.12012 1.44746 1.20202 0.82653 0.86837 0.78130 1.90674 1.26444 1.73991 1.48434 1.23523 1.05538 0.95257 1.05991 1.85315 1.38142 1.11089 1.48820 1.22885 1.17457 0.98443 1.29362 0.90992 1.24982 0.94961 0.98960 0.94714 1.70024 1.21166 1.34741 1.24507 0.86183 0.79446 0.82425 0.77540 1.20302 1.20822 1.19703 1.22251 0.95649 0.98880 0.99213 1.22840 0.95509 1.01838 0.95270 1.21516 0.95381 1.02301 0.94833 1.22443 0.97911 0.96000 0.90693 0.93571 0.91891 0.90735 0.90739 0.77333 0.76722 0.89004 0.93692 0.90752 0.89051 0.76280 0.89495 0.89314 0.92286 0.89457 0.90819 0.90962 0.91559 0.91393 0.90577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 9.08 37.16 0.34 -0.58 16 2 C 0.06 0.43 2.14 -68.87 -0.15 0.29 16 3 H 0.06 0.35 7.94 -51.93 -0.41 -0.06 16 4 C 0.52 4.88 6.48 -10.99 -0.07 4.81 16 5 N -0.86 -4.42 8.87 31.22 0.28 -4.14 16 6 O -0.51 -7.47 16.65 5.55 0.09 -7.38 16 7 N -0.47 -4.82 4.66 -217.01 -1.01 -5.83 16 8 C 0.04 0.45 5.57 -0.82 0.00 0.45 16 9 C -0.13 -1.58 6.13 -26.33 -0.16 -1.74 16 10 C 0.18 2.16 0.43 -130.70 -0.06 2.11 16 11 N -0.71 -10.22 4.43 -46.58 -0.21 -10.43 16 12 C 0.54 10.21 7.17 -10.99 -0.08 10.13 16 13 O -0.52 -11.60 14.02 5.56 0.08 -11.53 16 14 C -0.15 -3.22 6.16 36.00 0.22 -3.00 16 15 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 16 C -0.53 -15.59 9.50 30.94 0.29 -15.30 16 17 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 18 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 19 N -0.87 -26.69 13.22 55.49 0.73 -25.96 16 20 Si 0.92 21.96 29.55 -169.99 -5.02 16.93 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 24 C -0.12 -1.40 6.11 -25.60 -0.16 -1.55 16 25 C -0.12 -1.07 6.73 -23.49 -0.16 -1.23 16 26 C -0.10 -0.82 4.95 -26.74 -0.13 -0.95 16 27 C 0.04 0.37 1.39 -68.39 -0.10 0.27 16 28 H 0.05 0.39 7.74 -51.93 -0.40 -0.01 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.42 5.36 -51.93 -0.28 0.14 16 32 H 0.40 0.78 8.83 -40.82 -0.36 0.42 16 33 H 0.40 1.84 8.93 -40.82 -0.36 1.48 16 34 H 0.09 1.28 7.70 -51.93 -0.40 0.88 16 35 H 0.04 0.43 7.75 -51.93 -0.40 0.03 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.09 1.44 7.03 -51.93 -0.37 1.08 16 38 H 0.40 5.30 8.00 -40.82 -0.33 4.97 16 39 H 0.09 1.71 8.14 -51.92 -0.42 1.28 16 40 H 0.09 1.81 8.14 -51.91 -0.42 1.39 16 41 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 42 H 0.09 1.29 7.01 -51.93 -0.36 0.93 16 43 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.07 0.42 7.12 -51.93 -0.37 0.05 16 47 H 0.08 0.65 7.77 -51.93 -0.40 0.25 16 LS Contribution 383.04 15.07 5.77 5.77 Total: -1.00 -36.96 383.04 -9.18 -46.14 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -7.37 Total: 4.58 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: -0.30 Total: -4.28 kcal Atomic # 7 Polarization: -46.15 SS G_CDS: -0.21 Total: -46.36 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: 0.17 Total: -18.90 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.96 -9.18 -46.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717833711.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.291 kcal (2) G-P(sol) polarization free energy of solvation -36.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds