Wall clock time and date at job start Wed Apr 1 2020 00:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47251 * 2 1 4 4 C 1.50700 * 109.47071 * 239.99596 * 2 1 3 5 5 N 1.34777 * 119.99802 * 86.94134 * 4 2 1 6 6 O 1.21283 * 119.99985 * 267.21322 * 4 2 1 7 7 N 1.46900 * 109.46922 * 119.99548 * 2 1 3 8 8 C 1.50182 * 111.00108 * 178.09430 * 7 2 1 9 9 C 1.55200 * 106.38224 * 145.50444 * 8 7 2 10 10 C 1.51488 * 103.46787 * 5.52733 * 9 8 7 11 11 N 1.46502 * 111.06478 * 85.22993 * 10 9 8 12 12 C 1.34777 * 120.00046 * 70.04999 * 11 10 9 13 13 O 1.21279 * 119.99628 * 359.97438 * 12 11 10 14 14 C 1.50689 * 120.00111 * 180.02562 * 12 11 10 15 15 S 1.80998 * 109.47334 * 179.97438 * 14 12 11 16 16 C 1.76194 * 100.00405 * 180.02562 * 15 14 12 17 17 H 1.08001 * 119.99934 * 359.97438 * 16 15 14 18 18 C 1.38804 * 120.00437 * 180.02562 * 16 15 14 19 19 N 1.31630 * 119.99642 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00464 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47282 * 89.99752 * 20 18 16 22 22 H 1.48496 * 109.47445 * 210.00290 * 20 18 16 23 23 H 1.48514 * 109.46924 * 329.99778 * 20 18 16 24 24 C 1.51845 * 122.64575 * 219.97893 * 10 9 8 25 25 C 1.56195 * 101.98089 * 153.08934 * 24 10 9 26 26 C 1.55854 * 105.85382 * 334.79890 * 25 24 10 27 27 C 1.43872 * 111.00332 * 291.87898 * 7 2 1 28 28 H 1.09001 * 108.27292 * 306.56953 * 27 7 2 29 29 H 1.08999 * 109.46915 * 60.00009 * 1 2 3 30 30 H 1.09004 * 109.47251 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47377 * 299.99960 * 1 2 3 32 32 H 0.96997 * 120.00171 * 0.02562 * 5 4 2 33 33 H 0.97001 * 120.00122 * 179.97438 * 5 4 2 34 34 H 1.08998 * 110.07448 * 264.36099 * 8 7 2 35 35 H 1.08999 * 110.06788 * 25.89112 * 8 7 2 36 36 H 1.08999 * 110.08219 * 247.21875 * 9 8 7 37 37 H 1.09006 * 111.13492 * 124.32637 * 9 8 7 38 38 H 0.96999 * 119.99736 * 250.05558 * 11 10 9 39 39 H 1.08994 * 109.47556 * 299.99684 * 14 12 11 40 40 H 1.09003 * 109.47757 * 59.99999 * 14 12 11 41 41 H 0.97003 * 119.99881 * 180.02562 * 19 18 16 42 42 H 1.09002 * 110.92851 * 271.26089 * 24 10 9 43 43 H 1.09002 * 110.92820 * 34.91850 * 24 10 9 44 44 H 1.09004 * 110.16904 * 93.89930 * 25 24 10 45 45 H 1.08999 * 110.17168 * 215.62360 * 25 24 10 46 46 H 1.09002 * 110.48119 * 234.85747 * 26 25 24 47 47 H 1.08998 * 110.47680 * 112.24028 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 7 2.1982 -0.0292 -2.3814 6 8 2.2826 -1.8964 -1.1862 7 7 2.0196 -0.6924 1.1995 8 6 3.5202 -0.7530 1.2112 9 6 3.9514 -0.6366 2.6975 10 6 2.6363 -0.6574 3.4491 11 7 2.1935 -2.0316 3.6978 12 6 2.8584 -2.8048 4.5790 13 8 3.8235 -2.3630 5.1657 14 6 2.4034 -4.2185 4.8343 15 16 3.4913 -4.9909 6.0574 16 6 2.7512 -6.5865 6.1609 17 1 1.8840 -6.8195 5.5608 18 6 3.2820 -7.5438 7.0144 19 7 4.3387 -7.2597 7.7462 20 14 2.4970 -9.2352 7.1247 21 1 3.1233 -10.1377 6.1255 22 1 2.7014 -9.7879 8.4877 23 1 1.0420 -9.1245 6.8485 24 6 2.3662 0.2289 4.6522 25 6 0.8123 0.3789 4.6021 26 6 0.4108 0.1561 3.1128 27 6 1.7196 0.0606 2.3882 28 1 2.1061 1.0716 2.2589 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.9946 0.9185 -2.4177 33 1 2.5219 -0.4864 -3.1733 34 1 3.8594 -1.7048 0.8025 35 1 3.9323 0.0721 0.6303 36 1 4.4744 0.3053 2.8628 37 1 4.5765 -1.4795 2.9925 38 1 1.4219 -2.3850 3.2281 39 1 1.3810 -4.2086 5.2119 40 1 2.4418 -4.7862 3.9046 41 1 4.7099 -7.9288 8.3424 42 1 2.6807 -0.2599 5.5743 43 1 2.8547 1.1969 4.5401 44 1 0.3415 -0.3734 5.2350 45 1 0.5205 1.3779 4.9260 46 1 -0.1687 1.0022 2.7433 47 1 -0.1535 -0.7701 3.0044 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717833711.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:19 Heat of formation + Delta-G solvation = -82.379604 kcal Electronic energy + Delta-G solvation = -28681.868822 eV Core-core repulsion = 24796.828181 eV Total energy + Delta-G solvation = -3885.040641 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.47460 -40.61663 -39.52197 -36.58622 -34.86634 -34.59976 -34.47012 -33.47053 -30.95828 -29.97460 -28.38713 -27.75451 -27.47621 -24.88215 -22.80122 -22.49145 -21.42591 -20.61722 -20.26103 -19.79640 -18.32252 -18.01613 -17.66113 -17.31537 -16.88563 -16.62204 -16.42868 -16.27394 -15.91566 -15.65197 -15.50036 -14.95105 -14.73477 -14.63358 -14.46457 -14.22409 -13.74772 -13.59357 -13.27909 -13.17530 -13.13111 -13.02551 -12.89647 -12.69302 -12.52310 -12.48975 -12.16835 -12.01499 -11.82387 -11.72333 -11.46145 -11.27826 -11.14888 -10.81976 -10.63628 -10.63182 -10.28054 -9.99629 -9.45095 -8.65749 -8.35179 -6.12512 1.26962 1.41359 1.46158 1.57515 1.63231 1.71972 2.24629 2.28671 2.44820 2.72438 2.98511 3.05235 3.33575 3.68665 3.86050 3.87535 3.95621 4.02836 4.12401 4.14503 4.17826 4.29179 4.33967 4.36000 4.43808 4.50973 4.52074 4.65382 4.73928 4.80896 4.84238 4.92763 4.95998 5.07608 5.12012 5.21913 5.31491 5.33566 5.38304 5.40951 5.64644 5.76787 5.89545 6.05588 6.19295 6.52089 6.62380 7.05890 7.35806 7.39246 8.74134 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015038 B = 0.002801 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.480689 B = 9992.644905 C =10804.789396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.055 3.945 3 H 0.095 0.905 4 C 0.513 3.487 5 N -0.838 5.838 6 O -0.577 6.577 7 N -0.489 5.489 8 C 0.050 3.950 9 C -0.126 4.126 10 C 0.156 3.844 11 N -0.687 5.687 12 C 0.538 3.462 13 O -0.558 6.558 14 C -0.130 4.130 15 S -0.142 6.142 16 C -0.548 4.548 17 H 0.079 0.921 18 C 0.014 3.986 19 N -0.911 5.911 20 Si 0.999 3.001 21 H -0.269 1.269 22 H -0.275 1.275 23 H -0.259 1.259 24 C -0.122 4.122 25 C -0.111 4.111 26 C -0.097 4.097 27 C 0.059 3.941 28 H 0.070 0.930 29 H 0.087 0.913 30 H 0.049 0.951 31 H 0.088 0.912 32 H 0.418 0.582 33 H 0.406 0.594 34 H 0.056 0.944 35 H 0.068 0.932 36 H 0.094 0.906 37 H 0.047 0.953 38 H 0.410 0.590 39 H 0.104 0.896 40 H 0.096 0.904 41 H 0.271 0.729 42 H 0.045 0.955 43 H 0.095 0.905 44 H 0.055 0.945 45 H 0.091 0.909 46 H 0.102 0.898 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.651 25.184 -20.263 34.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.057 4.057 3 H 0.112 0.888 4 C 0.297 3.703 5 N -0.403 5.403 6 O -0.455 6.455 7 N -0.214 5.214 8 C -0.077 4.077 9 C -0.165 4.165 10 C 0.069 3.931 11 N -0.340 5.340 12 C 0.323 3.677 13 O -0.437 6.437 14 C -0.281 4.281 15 S 0.085 5.915 16 C -0.696 4.696 17 H 0.097 0.903 18 C -0.191 4.191 19 N -0.547 5.547 20 Si 0.820 3.180 21 H -0.194 1.194 22 H -0.200 1.200 23 H -0.183 1.183 24 C -0.161 4.161 25 C -0.149 4.149 26 C -0.135 4.135 27 C -0.051 4.051 28 H 0.087 0.913 29 H 0.106 0.894 30 H 0.068 0.932 31 H 0.107 0.893 32 H 0.249 0.751 33 H 0.237 0.763 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.112 0.888 37 H 0.066 0.934 38 H 0.246 0.754 39 H 0.122 0.878 40 H 0.114 0.886 41 H 0.080 0.920 42 H 0.064 0.936 43 H 0.114 0.886 44 H 0.074 0.926 45 H 0.109 0.891 46 H 0.121 0.879 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.099 24.620 -19.012 32.704 hybrid contribution -0.699 -1.163 -0.956 1.660 sum -10.798 23.457 -19.968 32.642 Atomic orbital electron populations 1.21847 0.90130 1.03069 1.04643 1.21976 0.98949 0.96672 0.88067 0.88765 1.20883 0.76385 0.87003 0.86001 1.43752 1.69382 1.14960 1.12225 1.90788 1.51487 1.17748 1.85445 1.64089 1.09540 1.47151 1.00600 1.23408 0.87107 1.01396 0.95757 1.22139 0.97186 1.02938 0.94269 1.21323 0.94463 0.81669 0.95637 1.45504 1.33054 1.12763 1.42669 1.19852 0.82568 0.86380 0.78889 1.90659 1.28209 1.74484 1.50309 1.23368 1.04544 0.96311 1.03925 1.85436 1.41522 1.12504 1.52052 1.23206 1.17769 0.98791 1.29854 0.90335 1.26124 0.95372 1.03683 0.93926 1.70182 1.22785 1.36456 1.25293 0.84957 0.78870 0.76257 0.77913 1.19404 1.19966 1.18278 1.22257 0.97897 0.99191 0.96753 1.22813 0.93189 1.02780 0.96105 1.21554 0.94835 1.03559 0.93522 1.22410 0.97722 0.96151 0.88798 0.91265 0.89448 0.93158 0.89299 0.75065 0.76265 0.92550 0.91377 0.88772 0.93364 0.75376 0.87755 0.88564 0.91957 0.93561 0.88613 0.92639 0.89081 0.87926 0.91156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.08 71.98 0.65 -0.60 16 2 C 0.05 0.67 2.14 44.17 0.09 0.77 16 3 H 0.09 0.57 7.94 -2.38 -0.02 0.55 16 4 C 0.51 8.71 6.48 87.66 0.57 9.28 16 5 N -0.84 -6.33 8.87 -173.53 -1.54 -7.87 16 6 O -0.58 -16.86 16.65 -3.04 -0.05 -16.91 16 7 N -0.49 -9.04 4.66 -840.48 -3.92 -12.96 16 8 C 0.05 1.11 5.57 86.41 0.48 1.59 16 9 C -0.13 -3.19 6.13 30.85 0.19 -3.00 16 10 C 0.16 3.70 0.43 4.33 0.00 3.70 16 11 N -0.69 -20.06 4.43 -419.66 -1.86 -21.92 16 12 C 0.54 21.43 7.17 87.65 0.63 22.06 16 13 O -0.56 -26.50 14.02 -3.03 -0.04 -26.54 16 14 C -0.13 -5.69 6.16 71.23 0.44 -5.25 16 15 S -0.14 -8.28 20.57 -56.49 -1.16 -9.44 16 16 C -0.55 -32.80 9.50 67.96 0.65 -32.16 16 17 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 18 C 0.01 0.81 5.49 84.86 0.47 1.27 16 19 N -0.91 -57.50 13.22 21.65 0.29 -57.21 16 20 Si 1.00 45.30 29.55 68.60 2.03 47.33 16 21 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 22 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 23 H -0.26 -11.07 7.11 99.48 0.71 -10.37 16 24 C -0.12 -2.69 6.11 31.32 0.19 -2.50 16 25 C -0.11 -1.75 6.73 32.69 0.22 -1.53 16 26 C -0.10 -1.18 4.95 30.59 0.15 -1.03 16 27 C 0.06 0.90 1.39 46.08 0.06 0.96 16 28 H 0.07 0.81 7.74 -2.39 -0.02 0.79 16 29 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 31 H 0.09 0.55 5.36 -2.39 -0.01 0.53 16 32 H 0.42 -0.04 8.83 -92.71 -0.82 -0.85 16 33 H 0.41 2.90 8.93 -92.71 -0.83 2.07 16 34 H 0.06 1.65 7.70 -2.39 -0.02 1.63 16 35 H 0.07 1.15 7.75 -2.39 -0.02 1.13 16 36 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.05 1.64 7.03 -2.38 -0.02 1.62 16 38 H 0.41 10.69 8.00 -92.71 -0.74 9.94 16 39 H 0.10 4.15 8.14 -2.40 -0.02 4.14 16 40 H 0.10 4.03 8.14 -2.39 -0.02 4.01 16 41 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 42 H 0.05 1.41 7.01 -2.39 -0.02 1.40 16 43 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.10 0.64 7.12 -2.39 -0.02 0.62 16 47 H 0.07 0.98 7.77 -2.39 -0.02 0.96 16 Total: -1.00 -87.11 383.04 -2.84 -89.95 By element: Atomic # 1 Polarization: 23.38 SS G_CDS: -1.37 Total: 22.00 kcal Atomic # 6 Polarization: -11.23 SS G_CDS: 4.79 Total: -6.43 kcal Atomic # 7 Polarization: -92.93 SS G_CDS: -7.03 Total: -99.96 kcal Atomic # 8 Polarization: -43.36 SS G_CDS: -0.09 Total: -43.45 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Atomic # 16 Polarization: -8.28 SS G_CDS: -1.16 Total: -9.44 kcal Total: -87.11 -2.84 -89.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717833711.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.567 kcal (2) G-P(sol) polarization free energy of solvation -87.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds