Wall clock time and date at job start Wed Apr 1 2020 00:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.46602 * 2 1 4 4 C 1.50699 * 109.47198 * 240.00247 * 2 1 3 5 5 N 1.34782 * 120.00004 * 86.91104 * 4 2 1 6 6 O 1.21278 * 119.99833 * 266.91253 * 4 2 1 7 7 N 1.46897 * 109.47325 * 119.99881 * 2 1 3 8 8 C 1.48473 * 111.00085 * 182.88700 * 7 2 1 9 9 C 1.54929 * 103.21917 * 159.83166 * 8 7 2 10 10 C 1.54442 * 102.93949 * 322.29364 * 9 8 7 11 11 N 1.46501 * 111.71542 * 261.02287 * 10 9 8 12 12 C 1.34778 * 119.99954 * 297.43883 * 11 10 9 13 13 O 1.21284 * 120.00011 * 359.97438 * 12 11 10 14 14 C 1.50701 * 120.00312 * 179.97438 * 12 11 10 15 15 S 1.80997 * 109.47672 * 180.02562 * 14 12 11 16 16 C 1.76201 * 100.00211 * 180.02562 * 15 14 12 17 17 H 1.08000 * 119.99697 * 0.02562 * 16 15 14 18 18 C 1.38795 * 119.99878 * 180.02562 * 16 15 14 19 19 N 1.31631 * 119.99954 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99981 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47059 * 89.99785 * 20 18 16 22 22 H 1.48500 * 109.46742 * 329.99865 * 20 18 16 23 23 H 1.48498 * 109.46847 * 209.99758 * 20 18 16 24 24 C 1.54112 * 109.76330 * 136.56315 * 10 9 8 25 25 C 1.54051 * 104.55656 * 223.33554 * 24 10 9 26 26 C 1.54817 * 103.11986 * 37.37927 * 25 24 10 27 27 C 1.47920 * 110.99928 * 300.49993 * 7 2 1 28 28 H 1.08995 * 111.35217 * 336.24402 * 27 7 2 29 29 H 1.09007 * 109.46602 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47369 * 299.99634 * 1 2 3 31 31 H 1.08997 * 109.47398 * 60.00046 * 1 2 3 32 32 H 0.96995 * 119.99718 * 0.02562 * 5 4 2 33 33 H 0.96996 * 119.99618 * 179.97438 * 5 4 2 34 34 H 1.08996 * 110.67101 * 278.26768 * 8 7 2 35 35 H 1.09004 * 110.66918 * 41.39997 * 8 7 2 36 36 H 1.09002 * 110.71663 * 203.92768 * 9 8 7 37 37 H 1.09002 * 110.71551 * 80.65738 * 9 8 7 38 38 H 0.96996 * 120.00478 * 117.43894 * 11 10 9 39 39 H 1.09007 * 109.47146 * 59.99774 * 14 12 11 40 40 H 1.09000 * 109.46857 * 300.00305 * 14 12 11 41 41 H 0.96999 * 120.00089 * 0.02562 * 19 18 16 42 42 H 1.08988 * 110.49333 * 340.83664 * 24 10 9 43 43 H 1.08999 * 110.49336 * 103.49937 * 24 10 9 44 44 H 1.08997 * 110.03130 * 279.19375 * 25 24 10 45 45 H 1.08998 * 111.27534 * 156.15150 * 25 24 10 46 46 H 1.08995 * 110.44383 * 204.10120 * 26 25 24 47 47 H 1.08997 * 110.55230 * 81.62676 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7103 -1.2305 5 7 2.1977 -0.0291 -2.3816 6 8 2.2878 -1.8950 -1.1849 7 7 2.0197 -0.6924 1.1994 8 6 3.5023 -0.6521 1.2691 9 6 3.7942 -0.9267 2.7657 10 6 2.6579 -0.1670 3.4847 11 7 3.1053 1.1383 3.9769 12 6 4.0807 1.2107 4.9041 13 8 4.5878 0.1952 5.3314 14 6 4.5413 2.5535 5.4100 15 16 5.8512 2.3192 6.6369 16 6 6.1906 3.9989 7.0468 17 1 5.6388 4.7938 6.5673 18 6 7.1672 4.3004 7.9859 19 7 7.8394 3.3314 8.5706 20 14 7.5265 6.0811 8.4210 21 1 6.6608 6.4985 9.5530 22 1 7.2518 6.9434 7.2436 23 1 8.9526 6.2169 8.8122 24 6 2.0856 -1.0382 4.6199 25 6 0.5586 -0.8712 4.5038 26 6 0.3263 -0.8167 2.9741 27 6 1.5356 -0.0287 2.4295 28 1 1.2895 1.0171 2.2455 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.9937 0.9185 -2.4179 33 1 2.5214 -0.4863 -3.1735 34 1 3.9382 -1.4304 0.6429 35 1 3.8745 0.3304 0.9785 36 1 4.7668 -0.5242 3.0489 37 1 3.7402 -1.9941 2.9795 38 1 2.6995 1.9505 3.6355 39 1 3.7022 3.0762 5.8692 40 1 4.9250 3.1432 4.5775 41 1 7.6525 2.4067 8.3450 42 1 2.3464 -2.0851 4.4659 43 1 2.4492 -0.6916 5.5872 44 1 0.2480 0.0612 4.9752 45 1 0.0334 -1.7187 4.9443 46 1 -0.6024 -0.2926 2.7485 47 1 0.3067 -1.8222 2.5539 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717833712.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:24 Heat of formation + Delta-G solvation = -73.261340 kcal Electronic energy + Delta-G solvation = -28410.894501 eV Core-core repulsion = 24526.249258 eV Total energy + Delta-G solvation = -3884.645243 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.20672 -39.77582 -38.37796 -35.57308 -34.12831 -33.76821 -32.60482 -32.54630 -29.99232 -28.98292 -27.54317 -26.42749 -24.84713 -24.19384 -22.20720 -21.17795 -20.51642 -19.96444 -19.31726 -18.35644 -18.03583 -17.33915 -16.80543 -16.22588 -15.76442 -15.50825 -15.10845 -14.89867 -14.66327 -14.29271 -14.19027 -13.98183 -13.86527 -13.69179 -13.27616 -12.84572 -12.64758 -12.59179 -12.42307 -12.18764 -12.15027 -11.84431 -11.70785 -11.57215 -11.32122 -11.14093 -11.00878 -10.93742 -10.90345 -10.58315 -10.21251 -10.11987 -10.06529 -9.60241 -9.42396 -9.04023 -8.93345 -8.76611 -8.24193 -6.68832 -6.64189 -4.02086 2.26976 2.81056 2.97068 2.99603 3.32545 3.37162 3.47797 3.54377 3.67615 4.03270 4.22923 4.26712 4.50711 4.54791 4.62921 4.67967 4.90590 4.94711 5.00579 5.07503 5.13207 5.20140 5.20609 5.26775 5.30041 5.43809 5.49089 5.57612 5.65635 5.69248 5.73724 5.75929 5.82334 5.95047 5.98277 6.00233 6.11588 6.19203 6.22492 6.35266 6.44746 6.57212 6.78310 6.95339 7.60949 7.89945 7.91412 8.48183 8.51407 9.24961 10.79839 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018353 B = 0.002480 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.284303 B =11285.887734 C =11866.622668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.055 3.945 3 H 0.061 0.939 4 C 0.521 3.479 5 N -0.859 5.859 6 O -0.518 6.518 7 N -0.483 5.483 8 C 0.032 3.968 9 C -0.119 4.119 10 C 0.171 3.829 11 N -0.725 5.725 12 C 0.532 3.468 13 O -0.508 6.508 14 C -0.132 4.132 15 S -0.113 6.113 16 C -0.608 4.608 17 H 0.065 0.935 18 C 0.035 3.965 19 N -0.884 5.884 20 Si 1.087 2.913 21 H -0.284 1.284 22 H -0.287 1.287 23 H -0.280 1.280 24 C -0.119 4.119 25 C -0.125 4.125 26 C -0.106 4.106 27 C 0.064 3.936 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.400 0.600 33 H 0.402 0.598 34 H 0.090 0.910 35 H 0.042 0.958 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.395 0.605 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.278 0.722 42 H 0.075 0.925 43 H 0.081 0.919 44 H 0.063 0.937 45 H 0.070 0.930 46 H 0.064 0.936 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.405 -4.014 -20.762 28.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.058 4.058 3 H 0.079 0.921 4 C 0.305 3.695 5 N -0.424 5.424 6 O -0.392 6.392 7 N -0.208 5.208 8 C -0.095 4.095 9 C -0.158 4.158 10 C 0.083 3.917 11 N -0.380 5.380 12 C 0.318 3.682 13 O -0.382 6.382 14 C -0.283 4.283 15 S 0.113 5.887 16 C -0.756 4.756 17 H 0.083 0.917 18 C -0.175 4.175 19 N -0.518 5.518 20 Si 0.913 3.087 21 H -0.210 1.210 22 H -0.213 1.213 23 H -0.205 1.205 24 C -0.157 4.157 25 C -0.163 4.163 26 C -0.144 4.144 27 C -0.045 4.045 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.228 0.772 33 H 0.233 0.767 34 H 0.108 0.892 35 H 0.060 0.940 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.229 0.771 39 H 0.109 0.891 40 H 0.108 0.892 41 H 0.091 0.909 42 H 0.094 0.906 43 H 0.099 0.901 44 H 0.082 0.918 45 H 0.089 0.911 46 H 0.083 0.917 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -16.668 -6.095 -18.919 25.940 hybrid contribution -1.426 2.148 -2.154 3.359 sum -18.094 -3.947 -21.072 28.054 Atomic orbital electron populations 1.21857 0.91554 1.03923 1.02676 1.21781 0.97816 0.95849 0.90308 0.92144 1.20433 0.76979 0.87534 0.84585 1.43913 1.71091 1.14160 1.13234 1.90768 1.48704 1.15239 1.84461 1.64855 1.07908 1.48747 0.99305 1.23372 0.87298 1.00593 0.98281 1.22855 0.99106 1.01320 0.92537 1.21417 0.93076 0.83860 0.93310 1.46035 1.40196 1.07757 1.43967 1.20216 0.78513 0.91259 0.78174 1.90709 1.54690 1.36523 1.56285 1.23332 1.04272 0.96754 1.03928 1.84821 1.42770 1.12916 1.48217 1.23727 1.28663 0.90932 1.32285 0.91655 1.26051 0.92133 1.06851 0.92511 1.70769 1.39183 1.01503 1.40384 0.83292 0.76930 0.72456 0.76034 1.21043 1.21332 1.20494 1.22489 0.94549 0.99680 0.99030 1.22393 0.96378 1.01870 0.95692 1.22427 0.95492 1.01381 0.95139 1.23243 0.95206 0.96763 0.89238 0.91517 0.90721 0.90915 0.91807 0.77219 0.76710 0.89211 0.93976 0.89734 0.89611 0.77081 0.89096 0.89213 0.90931 0.90607 0.90057 0.91785 0.91120 0.91696 0.89617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.85 8.53 37.16 0.32 -0.53 16 2 C 0.05 0.42 2.15 -68.87 -0.15 0.28 16 3 H 0.06 0.38 8.04 -51.93 -0.42 -0.04 16 4 C 0.52 4.73 6.58 -10.98 -0.07 4.66 16 5 N -0.86 -4.33 8.87 31.22 0.28 -4.06 16 6 O -0.52 -7.09 16.67 5.56 0.09 -7.00 16 7 N -0.48 -4.81 4.28 -214.89 -0.92 -5.73 16 8 C 0.03 0.36 5.76 -1.94 -0.01 0.35 16 9 C -0.12 -1.56 5.87 -24.96 -0.15 -1.71 16 10 C 0.17 2.03 0.83 -129.61 -0.11 1.92 16 11 N -0.73 -9.27 5.24 -45.57 -0.24 -9.51 16 12 C 0.53 9.41 6.88 -10.98 -0.08 9.34 16 13 O -0.51 -10.79 13.39 5.55 0.07 -10.72 16 14 C -0.13 -2.59 6.16 36.01 0.22 -2.37 16 15 S -0.11 -3.01 19.60 -107.50 -2.11 -5.12 16 16 C -0.61 -17.39 9.50 30.94 0.29 -17.09 16 17 H 0.07 1.79 7.80 -52.49 -0.41 1.38 16 18 C 0.04 1.02 5.49 -17.43 -0.10 0.92 16 19 N -0.88 -27.44 13.67 55.49 0.76 -26.68 16 20 Si 1.09 24.84 29.92 -169.99 -5.09 19.76 16 21 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 22 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 C -0.12 -1.49 5.61 -25.60 -0.14 -1.63 16 25 C -0.13 -1.21 6.86 -25.23 -0.17 -1.38 16 26 C -0.11 -0.90 5.51 -25.11 -0.14 -1.04 16 27 C 0.06 0.59 2.35 -65.61 -0.15 0.44 16 28 H 0.07 0.52 7.01 -51.93 -0.36 0.16 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.38 5.76 -51.93 -0.30 0.08 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.40 0.85 8.83 -40.82 -0.36 0.49 16 33 H 0.40 1.75 8.93 -40.82 -0.36 1.38 16 34 H 0.09 1.13 7.44 -51.93 -0.39 0.75 16 35 H 0.04 0.46 7.96 -51.93 -0.41 0.04 16 36 H 0.08 1.31 6.86 -51.93 -0.36 0.96 16 37 H 0.09 1.15 7.29 -51.93 -0.38 0.77 16 38 H 0.40 3.96 8.28 -40.82 -0.34 3.62 16 39 H 0.09 1.67 8.14 -51.91 -0.42 1.24 16 40 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 41 H 0.28 8.81 7.12 -40.82 -0.29 8.52 16 42 H 0.08 0.95 7.28 -51.94 -0.38 0.58 16 43 H 0.08 1.25 6.63 -51.93 -0.34 0.91 16 44 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.06 0.44 7.20 -51.93 -0.37 0.07 16 47 H 0.09 0.81 7.97 -51.93 -0.41 0.40 16 LS Contribution 380.29 15.07 5.73 5.73 Total: -1.00 -36.70 380.29 -9.07 -45.77 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -7.22 Total: 5.40 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: -0.43 Total: -7.84 kcal Atomic # 7 Polarization: -45.86 SS G_CDS: -0.12 Total: -45.98 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: 0.17 Total: -17.71 kcal Atomic # 14 Polarization: 24.84 SS G_CDS: -5.09 Total: 19.76 kcal Atomic # 16 Polarization: -3.01 SS G_CDS: -2.11 Total: -5.12 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.70 -9.07 -45.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717833712.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.494 kcal (2) G-P(sol) polarization free energy of solvation -36.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds