Wall clock time and date at job start Wed Apr 1 2020 00:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.46602 * 2 1 4 4 C 1.50699 * 109.47198 * 240.00247 * 2 1 3 5 5 N 1.34782 * 120.00004 * 86.91104 * 4 2 1 6 6 O 1.21278 * 119.99833 * 266.91253 * 4 2 1 7 7 N 1.46897 * 109.47325 * 119.99881 * 2 1 3 8 8 C 1.48473 * 111.00085 * 182.88700 * 7 2 1 9 9 C 1.54929 * 103.21917 * 159.83166 * 8 7 2 10 10 C 1.54442 * 102.93949 * 322.29364 * 9 8 7 11 11 N 1.46501 * 111.71542 * 261.02287 * 10 9 8 12 12 C 1.34778 * 119.99954 * 297.43883 * 11 10 9 13 13 O 1.21284 * 120.00011 * 359.97438 * 12 11 10 14 14 C 1.50701 * 120.00312 * 179.97438 * 12 11 10 15 15 S 1.80997 * 109.47672 * 180.02562 * 14 12 11 16 16 C 1.76201 * 100.00211 * 180.02562 * 15 14 12 17 17 H 1.08000 * 119.99697 * 0.02562 * 16 15 14 18 18 C 1.38795 * 119.99878 * 180.02562 * 16 15 14 19 19 N 1.31631 * 119.99954 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99981 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47059 * 89.99785 * 20 18 16 22 22 H 1.48500 * 109.46742 * 329.99865 * 20 18 16 23 23 H 1.48498 * 109.46847 * 209.99758 * 20 18 16 24 24 C 1.54112 * 109.76330 * 136.56315 * 10 9 8 25 25 C 1.54051 * 104.55656 * 223.33554 * 24 10 9 26 26 C 1.54817 * 103.11986 * 37.37927 * 25 24 10 27 27 C 1.47920 * 110.99928 * 300.49993 * 7 2 1 28 28 H 1.08995 * 111.35217 * 336.24402 * 27 7 2 29 29 H 1.09007 * 109.46602 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47369 * 299.99634 * 1 2 3 31 31 H 1.08997 * 109.47398 * 60.00046 * 1 2 3 32 32 H 0.96995 * 119.99718 * 0.02562 * 5 4 2 33 33 H 0.96996 * 119.99618 * 179.97438 * 5 4 2 34 34 H 1.08996 * 110.67101 * 278.26768 * 8 7 2 35 35 H 1.09004 * 110.66918 * 41.39997 * 8 7 2 36 36 H 1.09002 * 110.71663 * 203.92768 * 9 8 7 37 37 H 1.09002 * 110.71551 * 80.65738 * 9 8 7 38 38 H 0.96996 * 120.00478 * 117.43894 * 11 10 9 39 39 H 1.09007 * 109.47146 * 59.99774 * 14 12 11 40 40 H 1.09000 * 109.46857 * 300.00305 * 14 12 11 41 41 H 0.96999 * 120.00089 * 0.02562 * 19 18 16 42 42 H 1.08988 * 110.49333 * 340.83664 * 24 10 9 43 43 H 1.08999 * 110.49336 * 103.49937 * 24 10 9 44 44 H 1.08997 * 110.03130 * 279.19375 * 25 24 10 45 45 H 1.08998 * 111.27534 * 156.15150 * 25 24 10 46 46 H 1.08995 * 110.44383 * 204.10120 * 26 25 24 47 47 H 1.08997 * 110.55230 * 81.62676 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7103 -1.2305 5 7 2.1977 -0.0291 -2.3816 6 8 2.2878 -1.8950 -1.1849 7 7 2.0197 -0.6924 1.1994 8 6 3.5023 -0.6521 1.2691 9 6 3.7942 -0.9267 2.7657 10 6 2.6579 -0.1670 3.4847 11 7 3.1053 1.1383 3.9769 12 6 4.0807 1.2107 4.9041 13 8 4.5878 0.1952 5.3314 14 6 4.5413 2.5535 5.4100 15 16 5.8512 2.3192 6.6369 16 6 6.1906 3.9989 7.0468 17 1 5.6388 4.7938 6.5673 18 6 7.1672 4.3004 7.9859 19 7 7.8394 3.3314 8.5706 20 14 7.5265 6.0811 8.4210 21 1 6.6608 6.4985 9.5530 22 1 7.2518 6.9434 7.2436 23 1 8.9526 6.2169 8.8122 24 6 2.0856 -1.0382 4.6199 25 6 0.5586 -0.8712 4.5038 26 6 0.3263 -0.8167 2.9741 27 6 1.5356 -0.0287 2.4295 28 1 1.2895 1.0171 2.2455 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.9937 0.9185 -2.4179 33 1 2.5214 -0.4863 -3.1735 34 1 3.9382 -1.4304 0.6429 35 1 3.8745 0.3304 0.9785 36 1 4.7668 -0.5242 3.0489 37 1 3.7402 -1.9941 2.9795 38 1 2.6995 1.9505 3.6355 39 1 3.7022 3.0762 5.8692 40 1 4.9250 3.1432 4.5775 41 1 7.6525 2.4067 8.3450 42 1 2.3464 -2.0851 4.4659 43 1 2.4492 -0.6916 5.5872 44 1 0.2480 0.0612 4.9752 45 1 0.0334 -1.7187 4.9443 46 1 -0.6024 -0.2926 2.7485 47 1 0.3067 -1.8222 2.5539 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717833712.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:23 Heat of formation + Delta-G solvation = -103.645065 kcal Electronic energy + Delta-G solvation = -28412.212039 eV Core-core repulsion = 24526.249258 eV Total energy + Delta-G solvation = -3885.962780 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.13917 -40.67394 -39.53704 -36.43974 -34.92073 -34.75276 -34.70085 -33.51327 -31.14395 -30.07326 -28.37014 -27.42278 -26.98888 -24.83367 -23.26293 -22.12109 -21.31567 -20.88864 -20.43025 -20.31017 -18.78933 -18.10869 -17.74219 -17.44162 -16.79523 -16.67804 -16.29877 -16.09412 -15.75299 -15.52118 -15.40300 -15.06641 -14.88789 -14.75334 -14.51300 -14.38218 -13.89182 -13.84742 -13.64087 -13.19693 -13.08773 -12.91412 -12.75177 -12.66851 -12.35823 -12.18601 -11.99312 -11.94659 -11.93592 -11.80392 -11.54639 -11.42996 -11.10686 -10.89533 -10.84451 -10.64265 -10.31568 -10.12009 -9.51196 -8.92615 -8.86212 -6.27416 1.19406 1.51535 1.54644 1.61090 1.61586 1.79050 2.08956 2.34003 2.42824 2.87326 3.02326 3.14101 3.20094 3.46760 3.72644 3.82751 3.92885 4.02423 4.07237 4.12074 4.14153 4.16875 4.24965 4.34162 4.37798 4.39918 4.55763 4.68581 4.73997 4.76302 4.82779 4.88619 4.99393 5.01363 5.06192 5.17445 5.20224 5.29897 5.37737 5.53064 5.64193 5.73443 5.87264 5.97768 6.14728 6.44789 6.49891 7.06200 7.19677 7.37037 8.50942 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018353 B = 0.002480 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.284303 B =11285.887734 C =11866.622668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.052 3.948 3 H 0.088 0.912 4 C 0.516 3.484 5 N -0.839 5.839 6 O -0.575 6.575 7 N -0.495 5.495 8 C 0.044 3.956 9 C -0.121 4.121 10 C 0.168 3.832 11 N -0.698 5.698 12 C 0.536 3.464 13 O -0.551 6.551 14 C -0.109 4.109 15 S -0.194 6.194 16 C -0.612 4.612 17 H 0.075 0.925 18 C -0.020 4.020 19 N -0.915 5.915 20 Si 1.139 2.861 21 H -0.268 1.268 22 H -0.261 1.261 23 H -0.280 1.280 24 C -0.122 4.122 25 C -0.118 4.118 26 C -0.098 4.098 27 C 0.075 3.925 28 H 0.097 0.903 29 H 0.056 0.944 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.417 0.583 33 H 0.407 0.593 34 H 0.071 0.929 35 H 0.052 0.948 36 H 0.054 0.946 37 H 0.072 0.928 38 H 0.415 0.585 39 H 0.111 0.889 40 H 0.109 0.891 41 H 0.261 0.739 42 H 0.064 0.936 43 H 0.047 0.953 44 H 0.071 0.929 45 H 0.077 0.923 46 H 0.095 0.905 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.341 -0.988 -22.867 31.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.060 4.060 3 H 0.105 0.895 4 C 0.301 3.699 5 N -0.404 5.404 6 O -0.453 6.453 7 N -0.220 5.220 8 C -0.084 4.084 9 C -0.160 4.160 10 C 0.081 3.919 11 N -0.352 5.352 12 C 0.321 3.679 13 O -0.428 6.428 14 C -0.261 4.261 15 S 0.033 5.967 16 C -0.760 4.760 17 H 0.093 0.907 18 C -0.223 4.223 19 N -0.550 5.550 20 Si 0.957 3.043 21 H -0.193 1.193 22 H -0.186 1.186 23 H -0.206 1.206 24 C -0.161 4.161 25 C -0.156 4.156 26 C -0.136 4.136 27 C -0.034 4.034 28 H 0.114 0.886 29 H 0.075 0.925 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.248 0.752 33 H 0.238 0.762 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.091 0.909 38 H 0.252 0.748 39 H 0.129 0.871 40 H 0.127 0.873 41 H 0.072 0.928 42 H 0.083 0.917 43 H 0.066 0.934 44 H 0.090 0.910 45 H 0.096 0.904 46 H 0.114 0.886 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -19.669 -3.017 -21.100 29.003 hybrid contribution -0.570 1.132 -1.621 2.058 sum -20.238 -1.886 -22.721 30.486 Atomic orbital electron populations 1.21876 0.89795 1.03403 1.04554 1.21939 0.99107 0.96460 0.88444 0.89476 1.20787 0.76352 0.86980 0.85810 1.43763 1.69352 1.14969 1.12310 1.90753 1.51445 1.17651 1.85419 1.64810 1.06592 1.50079 1.00559 1.23154 0.88689 1.00375 0.96162 1.22756 0.98168 1.00601 0.94447 1.21543 0.93560 0.82900 0.93880 1.45721 1.38302 1.09232 1.41985 1.19924 0.79263 0.89812 0.78855 1.90710 1.56480 1.37536 1.58085 1.23228 1.02123 0.98444 1.02267 1.85087 1.46646 1.13423 1.51575 1.24054 1.28453 0.91480 1.31997 0.90683 1.27832 0.91749 1.10538 0.92210 1.70891 1.40858 1.01174 1.42085 0.82689 0.76947 0.67468 0.77244 1.19284 1.18576 1.20571 1.22449 0.97159 0.99080 0.97442 1.22367 0.93659 1.02586 0.96981 1.22397 0.96312 1.01192 0.93663 1.23251 0.93869 0.98506 0.87781 0.88573 0.92453 0.89466 0.89501 0.75166 0.76181 0.91036 0.93014 0.92715 0.90947 0.74773 0.87101 0.87299 0.92846 0.91693 0.93409 0.91028 0.90392 0.88636 0.90675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 8.53 71.98 0.61 -0.46 16 2 C 0.05 0.63 2.15 44.17 0.09 0.73 16 3 H 0.09 0.64 8.04 -2.38 -0.02 0.62 16 4 C 0.52 8.42 6.58 87.66 0.58 8.99 16 5 N -0.84 -6.31 8.87 -173.53 -1.54 -7.85 16 6 O -0.57 -15.64 16.67 -3.02 -0.05 -15.69 16 7 N -0.50 -8.87 4.28 -833.77 -3.57 -12.44 16 8 C 0.04 0.97 5.76 86.66 0.50 1.47 16 9 C -0.12 -3.27 5.87 31.74 0.19 -3.08 16 10 C 0.17 3.84 0.83 5.04 0.00 3.84 16 11 N -0.70 -16.60 5.24 -416.46 -2.18 -18.78 16 12 C 0.54 18.84 6.88 87.66 0.60 19.44 16 13 O -0.55 -24.39 13.39 -3.04 -0.04 -24.43 16 14 C -0.11 -4.18 6.16 71.24 0.44 -3.74 16 15 S -0.19 -10.56 19.60 -56.49 -1.11 -11.67 16 16 C -0.61 -34.98 9.50 67.95 0.65 -34.33 16 17 H 0.07 4.01 7.80 -2.91 -0.02 3.98 16 18 C -0.02 -1.17 5.49 84.86 0.47 -0.71 16 19 N -0.91 -58.18 13.67 21.65 0.30 -57.88 16 20 Si 1.14 48.99 29.92 68.60 2.05 51.04 16 21 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 22 H -0.26 -10.05 7.11 99.48 0.71 -9.35 16 23 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 24 C -0.12 -3.09 5.61 31.33 0.18 -2.92 16 25 C -0.12 -2.04 6.86 31.57 0.22 -1.82 16 26 C -0.10 -1.34 5.51 31.65 0.17 -1.17 16 27 C 0.07 1.14 2.35 45.72 0.11 1.25 16 28 H 0.10 0.97 7.01 -2.39 -0.02 0.95 16 29 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 30 H 0.09 0.44 5.76 -2.39 -0.01 0.43 16 31 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 32 H 0.42 0.25 8.83 -92.71 -0.82 -0.57 16 33 H 0.41 2.74 8.93 -92.71 -0.83 1.91 16 34 H 0.07 1.87 7.44 -2.39 -0.02 1.85 16 35 H 0.05 1.03 7.96 -2.38 -0.02 1.01 16 36 H 0.05 1.80 6.86 -2.39 -0.02 1.78 16 37 H 0.07 2.11 7.29 -2.39 -0.02 2.09 16 38 H 0.41 6.72 8.28 -92.71 -0.77 5.95 16 39 H 0.11 3.82 8.14 -2.39 -0.02 3.80 16 40 H 0.11 3.77 8.14 -2.40 -0.02 3.75 16 41 H 0.26 17.25 7.12 -92.71 -0.66 16.59 16 42 H 0.06 1.74 7.28 -2.39 -0.02 1.72 16 43 H 0.05 1.53 6.63 -2.39 -0.02 1.52 16 44 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 46 H 0.10 0.81 7.20 -2.39 -0.02 0.79 16 47 H 0.07 1.26 7.97 -2.39 -0.02 1.24 16 Total: -1.00 -85.54 380.29 -2.62 -88.15 By element: Atomic # 1 Polarization: 23.32 SS G_CDS: -1.28 Total: 22.04 kcal Atomic # 6 Polarization: -17.30 SS G_CDS: 4.80 Total: -12.50 kcal Atomic # 7 Polarization: -89.96 SS G_CDS: -6.99 Total: -96.95 kcal Atomic # 8 Polarization: -40.03 SS G_CDS: -0.09 Total: -40.12 kcal Atomic # 14 Polarization: 48.99 SS G_CDS: 2.05 Total: 51.04 kcal Atomic # 16 Polarization: -10.56 SS G_CDS: -1.11 Total: -11.67 kcal Total: -85.54 -2.62 -88.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717833712.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.492 kcal (2) G-P(sol) polarization free energy of solvation -85.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds