Wall clock time and date at job start Wed Apr 1 2020 01:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.48675 * 111.10657 * 2 1 4 4 C 1.54381 * 104.66900 * 201.09902 * 3 2 1 5 5 C 1.54258 * 105.06446 * 23.77117 * 4 3 2 6 6 C 1.48555 * 111.00197 * 244.58236 * 2 1 3 7 7 H 1.08997 * 110.41013 * 40.13893 * 6 2 1 8 8 C 1.50710 * 110.40866 * 277.81847 * 6 2 1 9 9 O 1.21278 * 119.99707 * 343.04845 * 8 6 2 10 10 N 1.34770 * 119.99736 * 163.04606 * 8 6 2 11 11 C 1.47028 * 125.65095 * 0.04764 * 10 8 6 12 12 C 1.54322 * 107.27002 * 181.02106 * 11 10 8 13 13 C 1.55158 * 102.94642 * 22.18748 * 12 11 10 14 14 H 1.09001 * 111.03594 * 82.58645 * 13 12 11 15 15 N 1.46497 * 111.00821 * 206.42254 * 13 12 11 16 16 C 1.34778 * 120.00309 * 267.20170 * 15 13 12 17 17 O 1.21276 * 119.99491 * 359.97438 * 16 15 13 18 18 C 1.50699 * 119.99778 * 180.02562 * 16 15 13 19 19 S 1.81004 * 109.46742 * 179.97438 * 18 16 15 20 20 C 1.76203 * 99.99907 * 180.02562 * 19 18 16 21 21 H 1.08002 * 119.99736 * 359.97438 * 20 19 18 22 22 C 1.38798 * 119.99832 * 180.27629 * 20 19 18 23 23 N 1.31634 * 120.00296 * 359.72198 * 22 20 19 24 24 Si 1.86801 * 119.99859 * 179.72079 * 22 20 19 25 25 H 1.48494 * 109.47230 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47021 * 119.99666 * 24 22 20 27 27 H 1.48501 * 109.47039 * 240.00083 * 24 22 20 28 28 C 1.47432 * 125.64820 * 179.97438 * 10 8 6 29 29 H 1.08997 * 109.46909 * 175.42500 * 1 2 3 30 30 H 1.09009 * 109.46890 * 295.42022 * 1 2 3 31 31 H 1.08993 * 109.46950 * 55.41716 * 1 2 3 32 32 H 1.08997 * 110.44707 * 82.26191 * 3 2 1 33 33 H 1.08996 * 110.40510 * 319.91049 * 3 2 1 34 34 H 1.09000 * 110.32858 * 264.87341 * 4 3 2 35 35 H 1.09003 * 110.41258 * 142.70768 * 4 3 2 36 36 H 1.09004 * 110.32805 * 241.10515 * 5 4 3 37 37 H 1.08997 * 110.32707 * 118.89423 * 5 4 3 38 38 H 1.09002 * 109.88049 * 300.43638 * 11 10 8 39 39 H 1.08996 * 109.88300 * 61.44752 * 11 10 8 40 40 H 1.09004 * 110.72239 * 263.82734 * 12 11 10 41 41 H 1.08997 * 110.72046 * 140.55277 * 12 11 10 42 42 H 0.97005 * 119.99622 * 87.19370 * 15 13 12 43 43 H 1.09000 * 109.47396 * 59.99696 * 18 16 15 44 44 H 1.09001 * 109.47080 * 299.99119 * 18 16 15 45 45 H 0.96995 * 120.00136 * 180.02562 * 23 22 20 46 46 H 1.09001 * 110.36300 * 37.07178 * 28 10 8 47 47 H 1.08999 * 110.36587 * 274.74985 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0044 1.3870 0.0000 4 6 3.4451 1.2500 -0.5376 5 6 3.4431 -0.0541 -1.3617 6 6 2.0014 -0.5953 -1.2526 7 1 1.4086 -0.2729 -2.1086 8 6 2.0104 -2.0993 -1.1573 9 8 1.9153 -2.6389 -0.0754 10 7 2.1241 -2.8446 -2.2745 11 6 2.2473 -2.3231 -3.6436 12 6 2.3239 -3.5384 -4.5916 13 6 1.6711 -4.6719 -3.7571 14 1 0.5841 -4.6338 -3.8283 15 7 2.1757 -5.9843 -4.1684 16 6 1.5167 -6.6968 -5.1036 17 8 0.5058 -6.2517 -5.6043 18 6 2.0356 -8.0471 -5.5262 19 16 0.9403 -8.7470 -6.7859 20 6 1.7595 -10.2775 -7.0875 21 1 2.6622 -10.5224 -6.5475 22 6 1.2482 -11.1656 -8.0236 23 7 0.1482 -10.8670 -8.6821 24 14 2.1211 -12.7848 -8.3490 25 1 3.3259 -12.8798 -7.4862 26 1 1.2034 -13.9118 -8.0443 27 1 2.5282 -12.8497 -9.7757 28 6 2.1470 -4.3178 -2.3259 29 1 -0.3633 -1.0244 -0.0820 30 1 -0.3633 0.4412 0.9283 31 1 -0.3633 0.5833 -0.8460 32 1 2.0132 1.7918 1.0120 33 1 1.4121 2.0230 -0.6579 34 1 4.1520 1.1746 0.2886 35 1 3.6960 2.0991 -1.1734 36 1 4.1490 -0.7696 -0.9399 37 1 3.6912 0.1552 -2.4022 38 1 1.3759 -1.7160 -3.8889 39 1 3.1533 -1.7235 -3.7318 40 1 3.3607 -3.7802 -4.8257 41 1 1.7548 -3.3534 -5.5026 42 1 2.9841 -6.3404 -3.7677 43 1 2.0664 -8.7112 -4.6624 44 1 3.0393 -7.9383 -5.9370 45 1 -0.2093 -11.4878 -9.3360 46 1 1.4640 -4.7339 -1.5852 47 1 3.1589 -4.6875 -2.1601 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001720338408.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:19:54 Heat of formation + Delta-G solvation = -56.640123 kcal Electronic energy + Delta-G solvation = -26968.178636 eV Core-core repulsion = 23084.254143 eV Total energy + Delta-G solvation = -3883.924493 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.83376 -39.60080 -38.50976 -37.22335 -34.22975 -32.69694 -32.45442 -31.36102 -30.07281 -29.52827 -27.87864 -26.13187 -25.51298 -24.13044 -22.24025 -21.51313 -21.38252 -20.54696 -19.38930 -18.00569 -17.76115 -16.96023 -16.48629 -16.22777 -16.06909 -15.28579 -14.99462 -14.82741 -14.66610 -14.56387 -14.36235 -14.25337 -13.91173 -13.75112 -13.33924 -13.09422 -12.91306 -12.74091 -12.64471 -12.47083 -12.38192 -12.05717 -12.00698 -11.87032 -11.64389 -11.56787 -11.18358 -11.09503 -11.08264 -11.04361 -10.78047 -10.04622 -9.83652 -9.51137 -9.11839 -9.06802 -8.95350 -8.93922 -8.27278 -6.53430 -6.24554 -3.95358 2.29816 2.40469 2.97264 3.00907 3.19978 3.26552 3.30879 3.53883 3.66771 3.96378 4.07635 4.17608 4.22726 4.31488 4.42302 4.58431 4.61903 4.72731 4.86193 4.89988 4.92231 4.95981 5.02441 5.10970 5.11913 5.13398 5.21586 5.27729 5.39360 5.43898 5.49783 5.52149 5.56321 5.58987 5.64307 5.72615 5.83621 5.84417 5.92165 6.09680 6.26071 6.47222 6.50356 7.15142 7.56936 7.58843 7.91203 8.32815 8.50314 9.21151 10.82918 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.037878 B = 0.001711 C = 0.001705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.030562 B =16356.412439 C =16419.750261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.492 5.492 3 C 0.032 3.968 4 C -0.123 4.123 5 C -0.111 4.111 6 C 0.047 3.953 7 H 0.074 0.926 8 C 0.539 3.461 9 O -0.514 6.514 10 N -0.620 5.620 11 C 0.101 3.899 12 C -0.145 4.145 13 C 0.136 3.864 14 H 0.107 0.893 15 N -0.729 5.729 16 C 0.536 3.464 17 O -0.514 6.514 18 C -0.154 4.154 19 S -0.060 6.060 20 C -0.535 4.535 21 H 0.074 0.926 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 C 0.103 3.897 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.029 0.971 32 H 0.087 0.913 33 H 0.047 0.953 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.401 0.599 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.268 0.732 46 H 0.086 0.914 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.602 25.635 14.590 30.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.216 5.216 3 C -0.096 4.096 4 C -0.161 4.161 5 C -0.150 4.150 6 C -0.065 4.065 7 H 0.092 0.908 8 C 0.326 3.674 9 O -0.388 6.388 10 N -0.356 5.356 11 C -0.022 4.022 12 C -0.184 4.184 13 C 0.029 3.971 14 H 0.125 0.875 15 N -0.384 5.384 16 C 0.322 3.678 17 O -0.388 6.388 18 C -0.304 4.304 19 S 0.167 5.833 20 C -0.684 4.684 21 H 0.092 0.908 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.205 1.205 27 H -0.206 1.206 28 C -0.021 4.021 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.048 0.952 32 H 0.105 0.895 33 H 0.065 0.935 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.101 0.899 41 H 0.110 0.890 42 H 0.235 0.765 43 H 0.109 0.891 44 H 0.109 0.891 45 H 0.078 0.922 46 H 0.105 0.895 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.850 25.775 14.776 30.281 hybrid contribution 1.765 -1.278 -0.299 2.199 sum 7.615 24.498 14.477 29.457 Atomic orbital electron populations 1.22547 0.87122 1.02521 1.01256 1.65073 1.08723 1.14894 1.32951 1.23185 0.95135 0.89464 1.01787 1.22291 0.96869 0.97030 0.99881 1.22225 0.94124 0.97651 1.00993 1.22606 0.98226 0.92014 0.93631 0.90799 1.19954 0.76351 0.88420 0.82664 1.90728 1.47976 1.73318 1.26732 1.48386 1.73761 1.06826 1.06663 1.22098 1.01818 0.97257 0.81029 1.23101 1.02761 0.93807 0.98763 1.21946 1.00405 0.82832 0.91886 0.87500 1.45853 1.30284 1.18775 1.43445 1.20348 0.83379 0.86030 0.78002 1.90705 1.24092 1.70599 1.53386 1.23536 1.05669 0.95564 1.05669 1.85401 1.33247 1.19715 1.44980 1.22908 1.13970 1.03967 1.27524 0.90827 1.24996 0.95056 0.98643 0.94897 1.70024 1.19758 1.36350 1.24140 0.86111 0.79308 0.81828 0.78215 1.19607 1.20546 1.20565 1.22362 1.02106 0.80395 0.97197 0.91007 0.90635 0.95221 0.89480 0.93476 0.90495 0.90764 0.90418 0.90315 0.91132 0.90999 0.89874 0.88996 0.76489 0.89054 0.89088 0.92212 0.89541 0.90846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.45 60.06 0.57 0.68 16 2 N -0.49 -4.46 4.93 -231.62 -1.14 -5.60 16 3 C 0.03 0.20 6.50 -2.12 -0.01 0.18 16 4 C -0.12 -0.65 7.00 -25.35 -0.18 -0.82 16 5 C -0.11 -0.70 6.54 -25.35 -0.17 -0.87 16 6 C 0.05 0.39 2.05 -67.22 -0.14 0.25 16 7 H 0.07 0.51 7.38 -51.93 -0.38 0.13 16 8 C 0.54 5.99 6.73 -10.98 -0.07 5.92 16 9 O -0.51 -7.83 16.83 5.56 0.09 -7.74 16 10 N -0.62 -5.83 3.33 -170.50 -0.57 -6.40 16 11 C 0.10 0.70 6.31 -3.06 -0.02 0.69 16 12 C -0.15 -1.24 6.65 -24.90 -0.17 -1.40 16 13 C 0.14 1.45 3.42 -65.77 -0.23 1.23 16 14 H 0.11 1.37 7.54 -51.93 -0.39 0.98 16 15 N -0.73 -8.77 5.20 -51.72 -0.27 -9.03 16 16 C 0.54 9.32 7.85 -10.99 -0.09 9.23 16 17 O -0.51 -10.99 15.50 5.56 0.09 -10.90 16 18 C -0.15 -2.96 6.16 36.01 0.22 -2.73 16 19 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 20 C -0.54 -15.02 9.50 30.94 0.29 -14.72 16 21 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 22 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 23 N -0.87 -25.87 13.22 55.49 0.73 -25.14 16 24 Si 0.92 21.18 29.55 -169.99 -5.02 16.16 16 25 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 28 C 0.10 1.00 6.55 -2.52 -0.02 0.99 16 29 H 0.07 0.69 7.96 -51.93 -0.41 0.27 16 30 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 31 H 0.03 0.19 7.98 -51.93 -0.41 -0.22 16 32 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.05 0.24 7.91 -51.93 -0.41 -0.17 16 34 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.08 0.59 7.85 -51.93 -0.41 0.18 16 37 H 0.08 0.34 8.00 -51.93 -0.42 -0.07 16 38 H 0.07 0.43 7.88 -51.93 -0.41 0.02 16 39 H 0.07 0.37 8.00 -51.93 -0.42 -0.04 16 40 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.40 3.67 8.57 -40.82 -0.35 3.32 16 43 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 44 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 45 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 46 H 0.09 0.96 8.04 -51.93 -0.42 0.54 16 47 H 0.07 0.64 8.00 -51.93 -0.42 0.22 16 LS Contribution 397.03 15.07 5.98 5.98 Total: -1.00 -36.40 397.03 -10.18 -46.59 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -7.77 Total: -0.70 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: -0.09 Total: 0.58 kcal Atomic # 7 Polarization: -44.93 SS G_CDS: -1.24 Total: -46.17 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: 0.18 Total: -18.64 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.40 -10.18 -46.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720338408.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.054 kcal (2) G-P(sol) polarization free energy of solvation -36.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds