Wall clock time and date at job start Wed Apr 1 2020 01:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.48675 * 111.10657 * 2 1 4 4 C 1.54381 * 104.66900 * 201.09902 * 3 2 1 5 5 C 1.54258 * 105.06446 * 23.77117 * 4 3 2 6 6 C 1.48555 * 111.00197 * 244.58236 * 2 1 3 7 7 H 1.08997 * 110.41013 * 40.13893 * 6 2 1 8 8 C 1.50710 * 110.40866 * 277.81847 * 6 2 1 9 9 O 1.21278 * 119.99707 * 343.04845 * 8 6 2 10 10 N 1.34770 * 119.99736 * 163.04606 * 8 6 2 11 11 C 1.47028 * 125.65095 * 0.04764 * 10 8 6 12 12 C 1.54322 * 107.27002 * 181.02106 * 11 10 8 13 13 C 1.55158 * 102.94642 * 22.18748 * 12 11 10 14 14 H 1.09001 * 111.03594 * 82.58645 * 13 12 11 15 15 N 1.46497 * 111.00821 * 206.42254 * 13 12 11 16 16 C 1.34778 * 120.00309 * 267.20170 * 15 13 12 17 17 O 1.21276 * 119.99491 * 359.97438 * 16 15 13 18 18 C 1.50699 * 119.99778 * 180.02562 * 16 15 13 19 19 S 1.81004 * 109.46742 * 179.97438 * 18 16 15 20 20 C 1.76203 * 99.99907 * 180.02562 * 19 18 16 21 21 H 1.08002 * 119.99736 * 359.97438 * 20 19 18 22 22 C 1.38798 * 119.99832 * 180.27629 * 20 19 18 23 23 N 1.31634 * 120.00296 * 359.72198 * 22 20 19 24 24 Si 1.86801 * 119.99859 * 179.72079 * 22 20 19 25 25 H 1.48494 * 109.47230 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47021 * 119.99666 * 24 22 20 27 27 H 1.48501 * 109.47039 * 240.00083 * 24 22 20 28 28 C 1.47432 * 125.64820 * 179.97438 * 10 8 6 29 29 H 1.08997 * 109.46909 * 175.42500 * 1 2 3 30 30 H 1.09009 * 109.46890 * 295.42022 * 1 2 3 31 31 H 1.08993 * 109.46950 * 55.41716 * 1 2 3 32 32 H 1.08997 * 110.44707 * 82.26191 * 3 2 1 33 33 H 1.08996 * 110.40510 * 319.91049 * 3 2 1 34 34 H 1.09000 * 110.32858 * 264.87341 * 4 3 2 35 35 H 1.09003 * 110.41258 * 142.70768 * 4 3 2 36 36 H 1.09004 * 110.32805 * 241.10515 * 5 4 3 37 37 H 1.08997 * 110.32707 * 118.89423 * 5 4 3 38 38 H 1.09002 * 109.88049 * 300.43638 * 11 10 8 39 39 H 1.08996 * 109.88300 * 61.44752 * 11 10 8 40 40 H 1.09004 * 110.72239 * 263.82734 * 12 11 10 41 41 H 1.08997 * 110.72046 * 140.55277 * 12 11 10 42 42 H 0.97005 * 119.99622 * 87.19370 * 15 13 12 43 43 H 1.09000 * 109.47396 * 59.99696 * 18 16 15 44 44 H 1.09001 * 109.47080 * 299.99119 * 18 16 15 45 45 H 0.96995 * 120.00136 * 180.02562 * 23 22 20 46 46 H 1.09001 * 110.36300 * 37.07178 * 28 10 8 47 47 H 1.08999 * 110.36587 * 274.74985 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0044 1.3870 0.0000 4 6 3.4451 1.2500 -0.5376 5 6 3.4431 -0.0541 -1.3617 6 6 2.0014 -0.5953 -1.2526 7 1 1.4086 -0.2729 -2.1086 8 6 2.0104 -2.0993 -1.1573 9 8 1.9153 -2.6389 -0.0754 10 7 2.1241 -2.8446 -2.2745 11 6 2.2473 -2.3231 -3.6436 12 6 2.3239 -3.5384 -4.5916 13 6 1.6711 -4.6719 -3.7571 14 1 0.5841 -4.6338 -3.8283 15 7 2.1757 -5.9843 -4.1684 16 6 1.5167 -6.6968 -5.1036 17 8 0.5058 -6.2517 -5.6043 18 6 2.0356 -8.0471 -5.5262 19 16 0.9403 -8.7470 -6.7859 20 6 1.7595 -10.2775 -7.0875 21 1 2.6622 -10.5224 -6.5475 22 6 1.2482 -11.1656 -8.0236 23 7 0.1482 -10.8670 -8.6821 24 14 2.1211 -12.7848 -8.3490 25 1 3.3259 -12.8798 -7.4862 26 1 1.2034 -13.9118 -8.0443 27 1 2.5282 -12.8497 -9.7757 28 6 2.1470 -4.3178 -2.3259 29 1 -0.3633 -1.0244 -0.0820 30 1 -0.3633 0.4412 0.9283 31 1 -0.3633 0.5833 -0.8460 32 1 2.0132 1.7918 1.0120 33 1 1.4121 2.0230 -0.6579 34 1 4.1520 1.1746 0.2886 35 1 3.6960 2.0991 -1.1734 36 1 4.1490 -0.7696 -0.9399 37 1 3.6912 0.1552 -2.4022 38 1 1.3759 -1.7160 -3.8889 39 1 3.1533 -1.7235 -3.7318 40 1 3.3607 -3.7802 -4.8257 41 1 1.7548 -3.3534 -5.5026 42 1 2.9841 -6.3404 -3.7677 43 1 2.0664 -8.7112 -4.6624 44 1 3.0393 -7.9383 -5.9370 45 1 -0.2093 -11.4878 -9.3360 46 1 1.4640 -4.7339 -1.5852 47 1 3.1589 -4.6875 -2.1601 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001720338408.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:19:53 Heat of formation + Delta-G solvation = -84.247582 kcal Electronic energy + Delta-G solvation = -26969.375785 eV Core-core repulsion = 23084.254143 eV Total energy + Delta-G solvation = -3885.121642 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.62688 -40.70829 -39.35218 -38.15031 -35.36892 -34.57849 -33.23853 -32.35503 -30.73300 -30.67184 -28.84415 -27.64194 -26.69143 -24.90953 -22.94240 -22.34760 -21.90724 -21.74217 -20.13279 -19.85455 -18.58883 -18.08804 -17.58711 -17.02796 -16.87696 -16.76639 -16.39702 -16.36283 -15.68381 -15.37040 -15.24625 -14.97029 -14.78331 -14.74036 -14.57323 -14.39723 -13.84637 -13.71271 -13.69176 -13.31173 -13.15488 -13.00559 -12.94433 -12.89276 -12.69620 -12.61703 -12.54489 -12.37529 -12.07067 -11.89551 -11.70448 -11.56539 -11.15522 -11.01523 -10.86053 -10.26547 -10.18896 -9.76000 -9.50745 -8.65613 -8.34649 -6.12087 1.24367 1.41619 1.43245 1.51493 1.56729 1.58133 1.72585 2.26798 2.33404 2.98985 2.99857 3.25918 3.32273 3.47896 3.58815 3.62895 3.91514 3.93697 3.96706 3.98796 4.17263 4.19070 4.25152 4.32244 4.37372 4.42045 4.51987 4.53195 4.58121 4.68320 4.70404 4.76899 4.86847 4.92169 4.97801 5.00938 5.06056 5.09947 5.13322 5.23293 5.42858 5.43400 5.72899 5.93894 6.20538 6.38415 6.46618 7.07273 7.09952 7.20807 8.74691 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.037878 B = 0.001711 C = 0.001705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.030562 B =16356.412439 C =16419.750261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.523 5.523 3 C 0.031 3.969 4 C -0.119 4.119 5 C -0.109 4.109 6 C 0.049 3.951 7 H 0.092 0.908 8 C 0.534 3.466 9 O -0.566 6.566 10 N -0.618 5.618 11 C 0.103 3.897 12 C -0.138 4.138 13 C 0.134 3.866 14 H 0.082 0.918 15 N -0.703 5.703 16 C 0.541 3.459 17 O -0.561 6.561 18 C -0.130 4.130 19 S -0.150 6.150 20 C -0.546 4.546 21 H 0.083 0.917 22 C 0.013 3.987 23 N -0.911 5.911 24 Si 0.998 3.002 25 H -0.257 1.257 26 H -0.275 1.275 27 H -0.274 1.274 28 C 0.108 3.892 29 H 0.046 0.954 30 H 0.080 0.920 31 H 0.046 0.954 32 H 0.087 0.913 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.098 0.902 36 H 0.061 0.939 37 H 0.106 0.894 38 H 0.083 0.917 39 H 0.102 0.898 40 H 0.097 0.903 41 H 0.083 0.917 42 H 0.419 0.581 43 H 0.109 0.891 44 H 0.114 0.886 45 H 0.271 0.729 46 H 0.067 0.933 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.207 26.947 14.667 32.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.248 5.248 3 C -0.096 4.096 4 C -0.157 4.157 5 C -0.147 4.147 6 C -0.063 4.063 7 H 0.110 0.890 8 C 0.323 3.677 9 O -0.444 6.444 10 N -0.353 5.353 11 C -0.019 4.019 12 C -0.177 4.177 13 C 0.028 3.972 14 H 0.100 0.900 15 N -0.357 5.357 16 C 0.327 3.673 17 O -0.438 6.438 18 C -0.282 4.282 19 S 0.077 5.923 20 C -0.693 4.693 21 H 0.101 0.899 22 C -0.191 4.191 23 N -0.548 5.548 24 Si 0.820 3.180 25 H -0.180 1.180 26 H -0.201 1.201 27 H -0.199 1.199 28 C -0.016 4.016 29 H 0.065 0.935 30 H 0.099 0.901 31 H 0.064 0.936 32 H 0.105 0.895 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.116 0.884 36 H 0.080 0.920 37 H 0.124 0.876 38 H 0.101 0.899 39 H 0.120 0.880 40 H 0.116 0.884 41 H 0.102 0.898 42 H 0.257 0.743 43 H 0.127 0.873 44 H 0.132 0.868 45 H 0.080 0.920 46 H 0.086 0.914 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 8.504 27.121 14.866 32.076 hybrid contribution 0.962 -1.602 -0.222 1.882 sum 9.466 25.519 14.644 30.908 Atomic orbital electron populations 1.22486 0.87114 1.01253 1.02264 1.65026 1.09093 1.16817 1.33881 1.23254 0.95812 0.88134 1.02363 1.22314 0.96058 0.97363 0.99987 1.22275 0.92192 0.97519 1.02721 1.22668 0.99886 0.89701 0.94000 0.89001 1.20582 0.75213 0.89762 0.82113 1.90698 1.50546 1.74432 1.28693 1.48446 1.72841 1.06545 1.07481 1.22262 1.03951 0.96767 0.78885 1.23049 1.03063 0.93225 0.98319 1.21958 0.99315 0.82665 0.93262 0.90009 1.45525 1.29985 1.18773 1.41425 1.20016 0.82991 0.85642 0.78693 1.90699 1.26194 1.71437 1.55476 1.23377 1.04581 0.96499 1.03708 1.85565 1.37066 1.20939 1.48723 1.23248 1.14161 1.04203 1.27723 0.89863 1.26109 0.95750 1.02788 0.94493 1.70184 1.21613 1.37978 1.24993 0.84918 0.78341 0.76417 0.78356 1.18035 1.20086 1.19916 1.22250 1.02505 0.81106 0.95698 0.93471 0.90130 0.93590 0.89463 0.92010 0.91014 0.88381 0.92024 0.87576 0.89899 0.87966 0.88397 0.89798 0.74347 0.87268 0.86812 0.92018 0.91449 0.89076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.45 127.69 1.21 1.48 16 2 N -0.52 -8.99 4.93 -886.71 -4.37 -13.36 16 3 C 0.03 0.33 6.50 86.43 0.56 0.89 16 4 C -0.12 -0.94 7.00 31.49 0.22 -0.72 16 5 C -0.11 -1.07 6.54 31.49 0.21 -0.87 16 6 C 0.05 0.73 2.05 44.32 0.09 0.82 16 7 H 0.09 1.00 7.38 -2.39 -0.02 0.99 16 8 C 0.53 11.54 6.73 87.66 0.59 12.13 16 9 O -0.57 -17.70 16.83 -3.02 -0.05 -17.75 16 10 N -0.62 -10.73 3.33 -811.73 -2.70 -13.43 16 11 C 0.10 1.14 6.31 86.73 0.55 1.69 16 12 C -0.14 -2.04 6.65 31.78 0.21 -1.83 16 13 C 0.13 2.74 3.42 46.39 0.16 2.90 16 14 H 0.08 2.15 7.54 -2.39 -0.02 2.13 16 15 N -0.70 -15.82 5.20 -435.94 -2.27 -18.08 16 16 C 0.54 18.52 7.85 87.66 0.69 19.20 16 17 O -0.56 -24.48 15.50 -3.02 -0.05 -24.53 16 18 C -0.13 -4.90 6.16 71.24 0.44 -4.46 16 19 S -0.15 -8.13 20.57 -56.49 -1.16 -9.30 16 20 C -0.55 -30.65 9.50 67.95 0.65 -30.01 16 21 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 22 C 0.01 0.75 5.49 84.86 0.47 1.22 16 23 N -0.91 -55.43 13.22 21.65 0.29 -55.15 16 24 Si 1.00 43.16 29.55 68.60 2.03 45.19 16 25 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 26 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 27 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 28 C 0.11 2.00 6.55 86.86 0.57 2.57 16 29 H 0.05 0.95 7.96 -2.39 -0.02 0.93 16 30 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 31 H 0.05 0.54 7.98 -2.39 -0.02 0.52 16 32 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.06 0.46 7.91 -2.39 -0.02 0.44 16 34 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 36 H 0.06 0.82 7.85 -2.39 -0.02 0.80 16 37 H 0.11 0.45 8.00 -2.39 -0.02 0.43 16 38 H 0.08 0.77 7.88 -2.39 -0.02 0.75 16 39 H 0.10 0.60 8.00 -2.39 -0.02 0.58 16 40 H 0.10 1.20 8.14 -2.38 -0.02 1.18 16 41 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.42 6.55 8.57 -92.70 -0.79 5.76 16 43 H 0.11 3.72 8.14 -2.40 -0.02 3.70 16 44 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 45 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 46 H 0.07 1.53 8.04 -2.39 -0.02 1.51 16 47 H 0.09 1.39 8.00 -2.39 -0.02 1.37 16 Total: -1.00 -83.30 397.03 -1.51 -84.81 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: 0.17 Total: 16.59 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: 6.60 Total: 5.01 kcal Atomic # 7 Polarization: -90.96 SS G_CDS: -9.05 Total: -100.02 kcal Atomic # 8 Polarization: -42.19 SS G_CDS: -0.10 Total: -42.28 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Atomic # 16 Polarization: -8.13 SS G_CDS: -1.16 Total: -9.30 kcal Total: -83.30 -1.51 -84.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720338408.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.563 kcal (2) G-P(sol) polarization free energy of solvation -83.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds