Wall clock time and date at job start Wed Apr 1 2020 01:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47443 * 111.00227 * 2 1 4 4 C 1.54312 * 107.23612 * 236.74273 * 3 2 1 5 5 C 1.55142 * 103.17714 * 337.62814 * 4 3 2 6 6 C 1.47844 * 110.99982 * 239.15844 * 2 1 3 7 7 H 1.09007 * 110.37325 * 27.42750 * 6 2 1 8 8 C 1.50697 * 110.37621 * 265.19521 * 6 2 1 9 9 O 1.21278 * 120.00134 * 341.45586 * 8 6 2 10 10 N 1.34783 * 120.00123 * 161.45390 * 8 6 2 11 11 C 1.46499 * 120.00047 * 179.97438 * 10 8 6 12 12 C 1.53001 * 109.46998 * 179.97438 * 11 10 8 13 13 C 1.53944 * 113.74199 * 271.67273 * 12 11 10 14 14 N 1.47578 * 86.11963 * 222.05077 * 13 12 11 15 15 C 1.34780 * 134.49543 * 204.64536 * 14 13 12 16 16 O 1.21279 * 119.99929 * 179.97438 * 15 14 13 17 17 C 1.50696 * 119.99539 * 359.97438 * 15 14 13 18 18 S 1.81002 * 109.46815 * 180.02562 * 17 15 14 19 19 C 1.76200 * 100.00066 * 180.02562 * 18 17 15 20 20 H 1.08001 * 120.00134 * 359.97438 * 19 18 17 21 21 C 1.38797 * 120.00200 * 180.02562 * 19 18 17 22 22 N 1.31631 * 119.99867 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00150 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47110 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47235 * 119.99569 * 23 21 19 26 26 H 1.48504 * 109.46987 * 239.99221 * 23 21 19 27 27 C 1.47584 * 91.01209 * 24.64274 * 14 13 12 28 28 H 1.09001 * 109.47028 * 60.12449 * 1 2 3 29 29 H 1.08996 * 109.47194 * 180.12176 * 1 2 3 30 30 H 1.09002 * 109.47032 * 300.12355 * 1 2 3 31 31 H 1.08997 * 109.88254 * 117.33308 * 3 2 1 32 32 H 1.09003 * 109.88840 * 356.15438 * 3 2 1 33 33 H 1.09002 * 110.70596 * 96.10119 * 4 3 2 34 34 H 1.09005 * 110.70742 * 219.16269 * 4 3 2 35 35 H 1.09003 * 110.98867 * 153.83100 * 5 4 3 36 36 H 1.08996 * 110.99420 * 277.65160 * 5 4 3 37 37 H 0.96995 * 120.00147 * 359.97438 * 10 8 6 38 38 H 1.09001 * 109.47415 * 300.00238 * 11 10 8 39 39 H 1.09004 * 109.47068 * 59.99734 * 11 10 8 40 40 H 1.08993 * 112.94422 * 43.41265 * 12 11 10 41 41 H 1.08999 * 113.76979 * 336.35462 * 13 12 11 42 42 H 1.09003 * 113.76513 * 107.74673 * 13 12 11 43 43 H 1.08994 * 109.47772 * 300.00173 * 17 15 14 44 44 H 1.09001 * 109.47445 * 60.00399 * 17 15 14 45 45 H 0.97002 * 120.00180 * 180.02562 * 22 21 19 46 46 H 1.09000 * 113.76703 * 221.06121 * 27 14 13 47 47 H 1.08995 * 113.76796 * 89.66729 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9974 1.3765 0.0000 4 6 2.9159 1.5137 -1.2324 5 6 3.3089 0.0459 -1.5457 6 6 1.9988 -0.7076 -1.1851 7 1 1.2880 -0.6517 -2.0096 8 6 2.2973 -2.1456 -0.8475 9 8 2.4208 -2.4837 0.3106 10 7 2.4271 -3.0562 -1.8328 11 6 2.7178 -4.4541 -1.5047 12 6 2.8134 -5.2714 -2.7946 13 6 1.4639 -5.8395 -3.2698 14 7 2.2052 -7.0802 -3.5681 15 6 2.0160 -8.1140 -4.4120 16 8 2.8156 -9.0253 -4.4435 17 6 0.8108 -8.1373 -5.3165 18 16 0.8392 -9.6430 -6.3205 19 6 -0.6371 -9.4153 -7.2552 20 1 -1.2428 -8.5344 -7.1020 21 6 -1.0221 -10.3687 -8.1876 22 7 -0.2842 -11.4426 -8.3740 23 14 -2.5868 -10.1270 -9.1789 24 1 -3.2304 -8.8482 -8.7842 25 1 -2.2551 -10.0886 -10.6259 26 1 -3.5191 -11.2523 -8.9145 27 6 3.2370 -6.7345 -2.5711 28 1 -0.3633 0.5119 -0.8911 29 1 -0.3633 -1.0276 0.0022 30 1 -0.3633 0.5158 0.8889 31 1 2.5697 1.5539 0.9106 32 1 1.1756 2.0892 -0.0687 33 1 2.3744 1.9547 -2.0694 34 1 3.7986 2.1059 -0.9913 35 1 3.5554 -0.0756 -2.6005 36 1 4.1343 -0.2808 -0.9133 37 1 2.3279 -2.7860 -2.7590 38 1 3.6639 -4.5118 -0.9665 39 1 1.9194 -4.8542 -0.8797 40 1 3.3787 -4.7655 -3.5772 41 1 0.7279 -5.9481 -2.4732 42 1 1.0651 -5.3426 -4.1542 43 1 -0.0967 -8.1204 -4.7131 44 1 0.8294 -7.2645 -5.9692 45 1 -0.5531 -12.1087 -9.0259 46 1 4.2538 -6.9522 -2.8977 47 1 3.0219 -7.1061 -1.5693 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001721385137.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:20:16 Heat of formation + Delta-G solvation = -26.528552 kcal Electronic energy + Delta-G solvation = -26386.326321 eV Core-core repulsion = 22503.707563 eV Total energy + Delta-G solvation = -3882.618757 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.70761 -40.13256 -38.43750 -37.53893 -34.85995 -32.61901 -32.45614 -31.26244 -30.10838 -28.68611 -26.38578 -26.22555 -25.77651 -25.32985 -22.66198 -21.61916 -21.25777 -20.12400 -19.08869 -17.85034 -17.64964 -16.98838 -16.67588 -16.12439 -15.83139 -15.75957 -15.26985 -15.07590 -14.83054 -14.52426 -14.23431 -14.02206 -13.86707 -13.79118 -13.32998 -13.16570 -13.08485 -12.86808 -12.61293 -12.49900 -12.23377 -12.04878 -11.90489 -11.78364 -11.72224 -11.59609 -11.30307 -11.09704 -11.08772 -11.03270 -10.78302 -10.05995 -9.83726 -9.43976 -9.35563 -9.10087 -8.80143 -8.63595 -8.26169 -6.53310 -6.24300 -3.95244 2.33143 2.61628 2.72374 3.03545 3.19330 3.21990 3.28450 3.52091 3.56006 3.95530 4.04021 4.09407 4.17411 4.36045 4.42897 4.52542 4.58123 4.63963 4.79301 4.85579 4.89047 4.96474 4.97028 5.10902 5.16907 5.23326 5.24670 5.26513 5.28542 5.34388 5.41947 5.43596 5.47499 5.48926 5.57041 5.65202 5.81286 5.90637 5.99513 6.08973 6.10945 6.33277 6.49788 7.17279 7.57118 7.78149 7.97410 8.32700 8.51368 9.20960 10.83208 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016884 B = 0.001773 C = 0.001658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.009966 B =15792.106341 C =16887.310754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.513 5.513 3 C 0.043 3.957 4 C -0.142 4.142 5 C -0.116 4.116 6 C 0.052 3.948 7 H 0.077 0.923 8 C 0.520 3.480 9 O -0.514 6.514 10 N -0.733 5.733 11 C 0.131 3.869 12 C -0.138 4.138 13 C 0.107 3.893 14 N -0.652 5.652 15 C 0.556 3.444 16 O -0.514 6.514 17 C -0.145 4.145 18 S -0.061 6.061 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 C 0.119 3.881 28 H 0.028 0.972 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.400 0.600 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.109 0.891 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.268 0.732 46 H 0.085 0.915 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.927 28.512 14.715 32.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.237 5.237 3 C -0.084 4.084 4 C -0.180 4.180 5 C -0.154 4.154 6 C -0.060 4.060 7 H 0.095 0.905 8 C 0.304 3.696 9 O -0.388 6.388 10 N -0.387 5.387 11 C 0.007 3.993 12 C -0.157 4.157 13 C -0.016 4.016 14 N -0.391 5.391 15 C 0.345 3.655 16 O -0.388 6.388 17 C -0.295 4.295 18 S 0.166 5.834 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.746 3.254 24 H -0.196 1.196 25 H -0.205 1.205 26 H -0.205 1.205 27 C -0.005 4.005 28 H 0.047 0.953 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.234 0.766 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.127 0.873 41 H 0.104 0.896 42 H 0.102 0.898 43 H 0.106 0.894 44 H 0.106 0.894 45 H 0.078 0.922 46 H 0.103 0.897 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.332 26.276 15.749 31.282 hybrid contribution -2.437 1.676 -1.807 3.466 sum 3.895 27.952 13.942 31.478 Atomic orbital electron populations 1.22575 0.86849 1.02476 1.00827 1.63072 1.08192 1.13832 1.38605 1.22871 0.98104 0.88628 0.98838 1.22797 1.00357 0.96653 0.98199 1.22741 0.96014 0.94435 1.02247 1.22620 0.98087 0.92346 0.92908 0.90508 1.20357 0.76926 0.86775 0.85512 1.90716 1.48052 1.80512 1.19493 1.46014 1.74001 1.08839 1.09805 1.21311 1.02157 0.79917 0.95944 1.23467 0.98385 0.95818 0.98015 1.23271 0.94780 0.83002 1.00536 1.49978 1.27512 1.22258 1.39357 1.20048 0.86760 0.79344 0.79330 1.90717 1.45664 1.34500 1.67908 1.23468 0.97514 1.07496 1.01055 1.85422 1.33614 1.19886 1.44507 1.22893 1.09783 1.10160 1.25484 0.90890 1.25001 0.97776 0.94443 0.96393 1.70028 1.37493 1.09193 1.33498 0.86108 0.81600 0.78308 0.79416 1.19631 1.20537 1.20535 1.23000 0.94332 0.90090 0.93035 0.95312 0.91261 0.90829 0.90017 0.92259 0.91076 0.90099 0.89800 0.89877 0.76591 0.90722 0.90785 0.87265 0.89593 0.89838 0.89375 0.89386 0.92199 0.89700 0.89660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.12 60.06 0.55 0.68 16 2 N -0.51 -4.04 4.69 -232.67 -1.09 -5.13 16 3 C 0.04 0.24 6.90 -2.84 -0.02 0.22 16 4 C -0.14 -0.59 6.93 -24.91 -0.17 -0.76 16 5 C -0.12 -0.57 6.52 -24.33 -0.16 -0.73 16 6 C 0.05 0.34 2.85 -67.08 -0.19 0.15 16 7 H 0.08 0.38 7.78 -51.93 -0.40 -0.03 16 8 C 0.52 4.61 7.12 -10.98 -0.08 4.54 16 9 O -0.51 -6.91 16.59 5.56 0.09 -6.82 16 10 N -0.73 -4.57 5.56 -60.29 -0.33 -4.91 16 11 C 0.13 0.90 5.53 -4.04 -0.02 0.88 16 12 C -0.14 -0.96 3.94 -89.69 -0.35 -1.31 16 13 C 0.11 0.96 8.17 -2.98 -0.02 0.94 16 14 N -0.65 -8.96 3.61 -178.35 -0.64 -9.60 16 15 C 0.56 10.75 8.07 -10.99 -0.09 10.67 16 16 O -0.51 -12.11 16.59 5.56 0.09 -12.02 16 17 C -0.14 -2.98 5.91 36.00 0.21 -2.76 16 18 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 19 C -0.53 -15.23 9.50 30.94 0.29 -14.94 16 20 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 21 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 22 N -0.87 -26.12 13.22 55.49 0.73 -25.38 16 23 Si 0.92 21.30 29.55 -169.99 -5.02 16.28 16 24 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 C 0.12 1.20 8.40 -2.97 -0.02 1.18 16 28 H 0.03 0.15 8.10 -51.93 -0.42 -0.27 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.27 7.58 -51.93 -0.39 -0.12 16 33 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.08 0.52 8.06 -51.93 -0.42 0.10 16 37 H 0.40 1.48 8.47 -40.82 -0.35 1.13 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.58 7.83 -51.93 -0.41 0.17 16 40 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.09 0.70 7.89 -51.93 -0.41 0.29 16 42 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 44 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 45 H 0.27 7.47 8.31 -40.82 -0.34 7.14 16 46 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 47 H 0.09 0.77 8.10 -51.93 -0.42 0.35 16 LS Contribution 403.79 15.07 6.09 6.09 Total: -1.00 -38.36 403.79 -10.32 -48.67 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -7.84 Total: -4.03 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: -0.18 Total: 0.74 kcal Atomic # 7 Polarization: -43.69 SS G_CDS: -1.34 Total: -45.03 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: 0.18 Total: -18.84 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -38.36 -10.32 -48.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721385137.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.144 kcal (2) G-P(sol) polarization free energy of solvation -38.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds