Wall clock time and date at job start Wed Apr 1 2020 01:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47443 * 111.00227 * 2 1 4 4 C 1.54312 * 107.23612 * 236.74273 * 3 2 1 5 5 C 1.55142 * 103.17714 * 337.62814 * 4 3 2 6 6 C 1.47844 * 110.99982 * 239.15844 * 2 1 3 7 7 H 1.09007 * 110.37325 * 27.42750 * 6 2 1 8 8 C 1.50697 * 110.37621 * 265.19521 * 6 2 1 9 9 O 1.21278 * 120.00134 * 341.45586 * 8 6 2 10 10 N 1.34783 * 120.00123 * 161.45390 * 8 6 2 11 11 C 1.46499 * 120.00047 * 179.97438 * 10 8 6 12 12 C 1.53001 * 109.46998 * 179.97438 * 11 10 8 13 13 C 1.53944 * 113.74199 * 271.67273 * 12 11 10 14 14 N 1.47578 * 86.11963 * 222.05077 * 13 12 11 15 15 C 1.34780 * 134.49543 * 204.64536 * 14 13 12 16 16 O 1.21279 * 119.99929 * 179.97438 * 15 14 13 17 17 C 1.50696 * 119.99539 * 359.97438 * 15 14 13 18 18 S 1.81002 * 109.46815 * 180.02562 * 17 15 14 19 19 C 1.76200 * 100.00066 * 180.02562 * 18 17 15 20 20 H 1.08001 * 120.00134 * 359.97438 * 19 18 17 21 21 C 1.38797 * 120.00200 * 180.02562 * 19 18 17 22 22 N 1.31631 * 119.99867 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00150 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47110 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47235 * 119.99569 * 23 21 19 26 26 H 1.48504 * 109.46987 * 239.99221 * 23 21 19 27 27 C 1.47584 * 91.01209 * 24.64274 * 14 13 12 28 28 H 1.09001 * 109.47028 * 60.12449 * 1 2 3 29 29 H 1.08996 * 109.47194 * 180.12176 * 1 2 3 30 30 H 1.09002 * 109.47032 * 300.12355 * 1 2 3 31 31 H 1.08997 * 109.88254 * 117.33308 * 3 2 1 32 32 H 1.09003 * 109.88840 * 356.15438 * 3 2 1 33 33 H 1.09002 * 110.70596 * 96.10119 * 4 3 2 34 34 H 1.09005 * 110.70742 * 219.16269 * 4 3 2 35 35 H 1.09003 * 110.98867 * 153.83100 * 5 4 3 36 36 H 1.08996 * 110.99420 * 277.65160 * 5 4 3 37 37 H 0.96995 * 120.00147 * 359.97438 * 10 8 6 38 38 H 1.09001 * 109.47415 * 300.00238 * 11 10 8 39 39 H 1.09004 * 109.47068 * 59.99734 * 11 10 8 40 40 H 1.08993 * 112.94422 * 43.41265 * 12 11 10 41 41 H 1.08999 * 113.76979 * 336.35462 * 13 12 11 42 42 H 1.09003 * 113.76513 * 107.74673 * 13 12 11 43 43 H 1.08994 * 109.47772 * 300.00173 * 17 15 14 44 44 H 1.09001 * 109.47445 * 60.00399 * 17 15 14 45 45 H 0.97002 * 120.00180 * 180.02562 * 22 21 19 46 46 H 1.09000 * 113.76703 * 221.06121 * 27 14 13 47 47 H 1.08995 * 113.76796 * 89.66729 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9974 1.3765 0.0000 4 6 2.9159 1.5137 -1.2324 5 6 3.3089 0.0459 -1.5457 6 6 1.9988 -0.7076 -1.1851 7 1 1.2880 -0.6517 -2.0096 8 6 2.2973 -2.1456 -0.8475 9 8 2.4208 -2.4837 0.3106 10 7 2.4271 -3.0562 -1.8328 11 6 2.7178 -4.4541 -1.5047 12 6 2.8134 -5.2714 -2.7946 13 6 1.4639 -5.8395 -3.2698 14 7 2.2052 -7.0802 -3.5681 15 6 2.0160 -8.1140 -4.4120 16 8 2.8156 -9.0253 -4.4435 17 6 0.8108 -8.1373 -5.3165 18 16 0.8392 -9.6430 -6.3205 19 6 -0.6371 -9.4153 -7.2552 20 1 -1.2428 -8.5344 -7.1020 21 6 -1.0221 -10.3687 -8.1876 22 7 -0.2842 -11.4426 -8.3740 23 14 -2.5868 -10.1270 -9.1789 24 1 -3.2304 -8.8482 -8.7842 25 1 -2.2551 -10.0886 -10.6259 26 1 -3.5191 -11.2523 -8.9145 27 6 3.2370 -6.7345 -2.5711 28 1 -0.3633 0.5119 -0.8911 29 1 -0.3633 -1.0276 0.0022 30 1 -0.3633 0.5158 0.8889 31 1 2.5697 1.5539 0.9106 32 1 1.1756 2.0892 -0.0687 33 1 2.3744 1.9547 -2.0694 34 1 3.7986 2.1059 -0.9913 35 1 3.5554 -0.0756 -2.6005 36 1 4.1343 -0.2808 -0.9133 37 1 2.3279 -2.7860 -2.7590 38 1 3.6639 -4.5118 -0.9665 39 1 1.9194 -4.8542 -0.8797 40 1 3.3787 -4.7655 -3.5772 41 1 0.7279 -5.9481 -2.4732 42 1 1.0651 -5.3426 -4.1542 43 1 -0.0967 -8.1204 -4.7131 44 1 0.8294 -7.2645 -5.9692 45 1 -0.5531 -12.1087 -9.0259 46 1 4.2538 -6.9522 -2.8977 47 1 3.0219 -7.1061 -1.5693 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001721385137.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:20:15 Heat of formation + Delta-G solvation = -56.021545 kcal Electronic energy + Delta-G solvation = -26387.605233 eV Core-core repulsion = 22503.707563 eV Total energy + Delta-G solvation = -3883.897670 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.50952 -40.95534 -39.22616 -38.66727 -35.62135 -34.60286 -33.04667 -32.36432 -30.96337 -29.69301 -27.72955 -27.18652 -26.75575 -26.38448 -23.23025 -22.05329 -21.98969 -20.85008 -20.29683 -19.53089 -18.36949 -17.98296 -17.60240 -16.97645 -16.88065 -16.78032 -16.45720 -16.28285 -16.01947 -15.73163 -15.22150 -14.88824 -14.64866 -14.62731 -14.28477 -14.17578 -13.98670 -13.66940 -13.57478 -13.46269 -13.21536 -13.07418 -12.98266 -12.92304 -12.60189 -12.47066 -12.34139 -12.25767 -12.07190 -11.85555 -11.73043 -11.64367 -11.17371 -10.94173 -10.72099 -10.30168 -10.02278 -9.77211 -9.26601 -8.70183 -8.36245 -6.15351 1.20372 1.40941 1.42399 1.54065 1.56823 1.69221 1.95531 2.10055 2.25731 2.98013 3.06769 3.20317 3.30254 3.58358 3.62104 3.69282 3.79578 4.00706 4.04610 4.12391 4.18392 4.23887 4.24987 4.42527 4.43820 4.47406 4.47815 4.56048 4.57131 4.61095 4.76895 4.79490 4.83235 4.91176 4.92637 4.96946 4.99627 5.08519 5.23076 5.30801 5.40276 5.50166 5.89543 6.06418 6.18420 6.55837 6.66772 7.04842 7.09197 7.37525 8.73355 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016884 B = 0.001773 C = 0.001658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.009966 B =15792.106341 C =16887.310754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.544 5.544 3 C 0.040 3.960 4 C -0.135 4.135 5 C -0.113 4.113 6 C 0.053 3.947 7 H 0.100 0.900 8 C 0.518 3.482 9 O -0.568 6.568 10 N -0.718 5.718 11 C 0.137 3.863 12 C -0.104 4.104 13 C 0.103 3.897 14 N -0.651 5.651 15 C 0.552 3.448 16 O -0.571 6.571 17 C -0.118 4.118 18 S -0.154 6.154 19 C -0.545 4.545 20 H 0.083 0.917 21 C 0.012 3.988 22 N -0.911 5.911 23 Si 1.001 2.999 24 H -0.255 1.255 25 H -0.273 1.273 26 H -0.275 1.275 27 C 0.109 3.891 28 H 0.045 0.955 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.108 0.892 36 H 0.064 0.936 37 H 0.416 0.584 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.128 0.872 41 H 0.101 0.899 42 H 0.102 0.898 43 H 0.103 0.897 44 H 0.108 0.892 45 H 0.271 0.729 46 H 0.081 0.919 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.610 31.748 14.000 34.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.269 5.269 3 C -0.087 4.087 4 C -0.173 4.173 5 C -0.152 4.152 6 C -0.059 4.059 7 H 0.118 0.882 8 C 0.304 3.696 9 O -0.446 6.446 10 N -0.371 5.371 11 C 0.013 3.987 12 C -0.123 4.123 13 C -0.018 4.018 14 N -0.387 5.387 15 C 0.341 3.659 16 O -0.450 6.450 17 C -0.269 4.269 18 S 0.073 5.927 19 C -0.693 4.693 20 H 0.102 0.898 21 C -0.192 4.192 22 N -0.548 5.548 23 Si 0.822 3.178 24 H -0.179 1.179 25 H -0.198 1.198 26 H -0.200 1.200 27 C -0.014 4.014 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.104 0.896 34 H 0.106 0.894 35 H 0.126 0.874 36 H 0.083 0.917 37 H 0.253 0.747 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.146 0.854 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.126 0.874 45 H 0.080 0.920 46 H 0.099 0.901 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 5.010 29.590 15.037 33.567 hybrid contribution -1.965 0.772 -1.429 2.549 sum 3.045 30.362 13.607 33.410 Atomic orbital electron populations 1.22536 0.86433 1.01815 1.01677 1.62983 1.08897 1.15161 1.39889 1.22893 0.98683 0.87893 0.99230 1.22788 1.00433 0.96263 0.97852 1.22765 0.94539 0.94587 1.03262 1.22683 0.99367 0.90721 0.93100 0.88240 1.20863 0.75847 0.87953 0.84973 1.90694 1.50695 1.81475 1.21706 1.45870 1.72737 1.08178 1.10354 1.21165 1.01852 0.80200 0.95485 1.23205 0.96938 0.93859 0.98341 1.23680 0.95854 0.80458 1.01856 1.50017 1.29078 1.21525 1.38078 1.19786 0.85841 0.80063 0.80225 1.90689 1.47289 1.37083 1.69966 1.23261 0.99128 1.03877 1.00637 1.85625 1.34621 1.25668 1.46797 1.23219 1.09718 1.10677 1.25656 0.89843 1.26161 1.01659 0.93867 0.97546 1.70194 1.39776 1.10357 1.34462 0.84879 0.76545 0.78892 0.77459 1.17881 1.19822 1.20004 1.23335 0.93442 0.92066 0.92539 0.93643 0.92615 0.90806 0.91226 0.91149 0.89554 0.89373 0.87393 0.91724 0.74666 0.91045 0.91450 0.85368 0.88145 0.87963 0.87849 0.87356 0.91957 0.90072 0.88468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.12 127.69 1.16 1.44 16 2 N -0.54 -7.95 4.69 -890.04 -4.18 -12.13 16 3 C 0.04 0.40 6.90 86.64 0.60 1.00 16 4 C -0.14 -0.78 6.93 31.77 0.22 -0.56 16 5 C -0.11 -0.85 6.52 32.15 0.21 -0.64 16 6 C 0.05 0.58 2.85 44.81 0.13 0.71 16 7 H 0.10 0.63 7.78 -2.38 -0.02 0.61 16 8 C 0.52 8.38 7.12 87.66 0.62 9.00 16 9 O -0.57 -15.17 16.59 -3.02 -0.05 -15.22 16 10 N -0.72 -6.94 5.56 -463.05 -2.57 -9.51 16 11 C 0.14 1.55 5.53 86.38 0.48 2.02 16 12 C -0.10 -1.12 3.94 -10.13 -0.04 -1.16 16 13 C 0.10 1.49 8.17 86.48 0.71 2.19 16 14 N -0.65 -16.69 3.61 -836.58 -3.02 -19.71 16 15 C 0.55 21.21 8.07 87.66 0.71 21.91 16 16 O -0.57 -27.75 16.59 -3.03 -0.05 -27.80 16 17 C -0.12 -4.77 5.91 71.23 0.42 -4.35 16 18 S -0.15 -8.67 20.57 -56.49 -1.16 -9.84 16 19 C -0.54 -31.10 9.50 67.95 0.65 -30.45 16 20 H 0.08 4.41 7.80 -2.91 -0.02 4.38 16 21 C 0.01 0.70 5.49 84.86 0.47 1.17 16 22 N -0.91 -56.04 13.22 21.65 0.29 -55.76 16 23 Si 1.00 43.26 29.55 68.60 2.03 45.29 16 24 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 25 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 26 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 27 C 0.11 1.99 8.40 86.48 0.73 2.72 16 28 H 0.05 0.36 8.10 -2.39 -0.02 0.34 16 29 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.07 0.51 7.58 -2.39 -0.02 0.49 16 33 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 34 H 0.09 0.39 8.14 -2.38 -0.02 0.37 16 35 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 36 H 0.06 0.73 8.06 -2.39 -0.02 0.71 16 37 H 0.42 1.41 8.47 -92.71 -0.79 0.62 16 38 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.07 0.91 7.83 -2.39 -0.02 0.90 16 40 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.10 1.26 7.89 -2.39 -0.02 1.24 16 42 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.10 3.83 8.14 -2.40 -0.02 3.81 16 44 H 0.11 3.89 8.14 -2.39 -0.02 3.87 16 45 H 0.27 15.42 8.31 -92.71 -0.77 14.64 16 46 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 47 H 0.10 1.60 8.10 -2.39 -0.02 1.58 16 Total: -1.00 -88.14 403.79 -1.48 -89.63 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: 0.18 Total: 10.02 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: 7.05 Total: 5.02 kcal Atomic # 7 Polarization: -87.63 SS G_CDS: -9.48 Total: -97.11 kcal Atomic # 8 Polarization: -42.92 SS G_CDS: -0.10 Total: -43.02 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Atomic # 16 Polarization: -8.67 SS G_CDS: -1.16 Total: -9.84 kcal Total: -88.14 -1.48 -89.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721385137.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.607 kcal (2) G-P(sol) polarization free energy of solvation -88.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds