Wall clock time and date at job start Wed Apr 1 2020 00:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.46993 * 2 1 4 4 C 1.50694 * 109.47215 * 119.99989 * 2 1 3 5 5 N 1.34778 * 120.00486 * 286.06942 * 4 2 1 6 6 O 1.21285 * 120.00040 * 106.06857 * 4 2 1 7 7 N 1.46901 * 109.46653 * 240.00142 * 2 1 3 8 8 C 1.45959 * 111.00100 * 309.09485 * 7 2 1 9 9 C 1.52952 * 110.13764 * 223.12212 * 8 7 2 10 10 C 1.52237 * 111.72839 * 293.51405 * 9 8 7 11 11 H 1.09002 * 111.03006 * 180.64597 * 10 9 8 12 12 C 1.54205 * 106.17630 * 302.10086 * 10 9 8 13 13 C 1.54103 * 105.43495 * 106.92888 * 12 10 9 14 14 C 1.51457 * 104.58043 * 352.36911 * 13 12 10 15 15 H 1.09007 * 106.69038 * 138.00379 * 14 13 12 16 16 C 1.49529 * 111.00109 * 75.75721 * 7 2 1 17 17 N 1.47304 * 109.39588 * 22.58226 * 14 13 12 18 18 C 1.34777 * 127.71777 * 151.82062 * 17 14 13 19 19 O 1.21289 * 120.00110 * 359.69727 * 18 17 14 20 20 C 1.50701 * 120.00071 * 179.70320 * 18 17 14 21 21 S 1.80998 * 109.47278 * 179.97438 * 20 18 17 22 22 C 1.76198 * 99.99764 * 179.97438 * 21 20 18 23 23 H 1.07997 * 120.00562 * 0.02562 * 22 21 20 24 24 C 1.38806 * 119.99730 * 180.02562 * 22 21 20 25 25 N 1.31631 * 119.99990 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 119.99912 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.46829 * 59.99473 * 26 24 22 28 28 H 1.48495 * 109.47057 * 179.97438 * 26 24 22 29 29 H 1.48495 * 109.47194 * 299.99856 * 26 24 22 30 30 H 1.08997 * 109.47370 * 65.51052 * 1 2 3 31 31 H 1.08995 * 109.47154 * 185.52105 * 1 2 3 32 32 H 1.09006 * 109.46519 * 305.51249 * 1 2 3 33 33 H 0.97000 * 119.99494 * 359.97438 * 5 4 2 34 34 H 0.96997 * 120.00185 * 180.02562 * 5 4 2 35 35 H 1.08997 * 109.35730 * 102.91817 * 8 7 2 36 36 H 1.08996 * 109.35527 * 343.32773 * 8 7 2 37 37 H 1.09000 * 109.02965 * 172.93629 * 9 8 7 38 38 H 1.09000 * 108.96888 * 54.05052 * 9 8 7 39 39 H 1.08997 * 110.24645 * 226.08120 * 12 10 9 40 40 H 1.08996 * 110.24324 * 348.07619 * 12 10 9 41 41 H 1.08998 * 110.33596 * 233.64498 * 13 12 10 42 42 H 1.08999 * 110.62486 * 111.24009 * 13 12 10 43 43 H 1.09007 * 109.56661 * 294.82056 * 16 7 2 44 44 H 1.09001 * 109.56610 * 55.16998 * 16 7 2 45 45 H 1.09001 * 109.46948 * 299.99993 * 20 18 17 46 46 H 1.09002 * 109.46842 * 59.99539 * 20 18 17 47 47 H 0.97005 * 119.99698 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.9525 -0.1106 2.4348 6 8 2.5087 -1.8219 1.1370 7 7 2.0196 -0.6925 -1.1995 8 6 1.3838 -1.9981 -1.3459 9 6 2.4221 -3.0476 -1.7457 10 6 2.9790 -2.7874 -3.1385 11 1 3.7089 -3.5478 -3.4162 12 6 1.7676 -2.7886 -4.0927 13 6 1.5512 -1.3135 -4.4826 14 6 2.5056 -0.5408 -3.5961 15 1 2.9607 0.2277 -4.2210 16 6 1.8744 0.1695 -2.4127 17 7 3.5904 -1.4325 -3.1511 18 6 4.8532 -1.0945 -2.8229 19 8 5.2062 0.0642 -2.8839 20 6 5.8266 -2.1564 -2.3803 21 16 7.4264 -1.3934 -2.0134 22 6 8.3431 -2.8199 -1.5346 23 1 7.8706 -3.7910 -1.5359 24 6 9.6726 -2.6955 -1.1556 25 7 10.2486 -1.5119 -1.1545 26 14 10.6447 -4.2079 -0.6486 27 1 10.6818 -5.1734 -1.7763 28 1 12.0303 -3.8094 -0.2929 29 1 9.9949 -4.8433 0.5258 30 1 -0.3634 0.4260 -0.9352 31 1 -0.3633 -1.0228 0.0989 32 1 -0.3632 0.5970 0.8366 33 1 1.5719 0.7785 2.5094 34 1 2.2762 -0.5678 3.2266 35 1 0.6135 -1.9406 -2.1149 36 1 0.9259 -2.2851 -0.3993 37 1 1.9566 -4.0331 -1.7275 38 1 3.2407 -3.0282 -1.0263 39 1 1.9848 -3.3874 -4.9772 40 1 0.8857 -3.1751 -3.5820 41 1 0.5218 -1.0161 -4.2828 42 1 1.7949 -1.1543 -5.5330 43 1 0.8170 0.3438 -2.6122 44 1 2.3781 1.1217 -2.2464 45 1 5.4450 -2.6491 -1.4860 46 1 5.9490 -2.8915 -3.1759 47 1 11.1779 -1.4250 -0.8900 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001723625381.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:37 Heat of formation + Delta-G solvation = -47.341548 kcal Electronic energy + Delta-G solvation = -29542.274432 eV Core-core repulsion = 25658.753156 eV Total energy + Delta-G solvation = -3883.521277 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.94785 -39.54530 -37.64795 -36.08317 -33.81593 -33.06929 -32.31567 -31.73707 -30.86334 -28.64816 -26.92407 -26.23375 -25.36489 -24.62991 -22.25779 -21.81400 -20.41201 -19.33157 -18.63559 -17.69002 -17.48256 -16.96343 -16.56460 -15.86447 -15.34750 -15.18240 -14.82676 -14.70373 -14.57607 -14.27148 -14.13665 -13.82228 -13.65854 -13.46783 -13.33206 -12.87602 -12.63294 -12.51165 -12.33019 -12.18664 -11.99101 -11.73222 -11.53715 -11.33286 -11.17778 -10.95201 -10.90759 -10.76737 -10.68721 -10.65489 -10.31391 -9.75333 -9.69615 -9.66904 -9.15037 -8.94708 -8.25354 -8.19344 -8.08061 -6.34892 -6.10351 -3.78637 2.64087 3.02133 3.25879 3.31350 3.33724 3.36200 3.41231 3.76276 3.93651 4.31976 4.37209 4.50078 4.62317 4.70063 4.76569 4.85234 5.00795 5.01785 5.09832 5.22558 5.24440 5.26698 5.28670 5.32565 5.41980 5.46322 5.56605 5.62796 5.70598 5.74078 5.76115 5.88500 5.98475 6.00846 6.05350 6.06972 6.16768 6.34558 6.52285 6.66743 6.76624 6.92027 7.13960 7.29344 7.70809 8.04603 8.27095 8.46904 8.86929 9.34900 10.97146 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012192 B = 0.003764 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2296.094558 B = 7436.201445 C = 8494.065322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.065 3.935 3 H 0.103 0.897 4 C 0.522 3.478 5 N -0.860 5.860 6 O -0.516 6.516 7 N -0.515 5.515 8 C 0.077 3.923 9 C -0.127 4.127 10 C 0.131 3.869 11 H 0.088 0.912 12 C -0.128 4.128 13 C -0.119 4.119 14 C 0.132 3.868 15 H 0.072 0.928 16 C 0.060 3.940 17 N -0.593 5.593 18 C 0.569 3.431 19 O -0.524 6.524 20 C -0.141 4.141 21 S -0.062 6.062 22 C -0.531 4.531 23 H 0.071 0.929 24 C 0.074 3.926 25 N -0.870 5.870 26 Si 0.916 3.084 27 H -0.274 1.274 28 H -0.283 1.283 29 H -0.274 1.274 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.397 0.603 34 H 0.401 0.599 35 H 0.038 0.962 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.082 0.918 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.043 0.957 44 H 0.083 0.917 45 H 0.090 0.910 46 H 0.083 0.917 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.737 1.790 -0.250 26.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.048 4.048 3 H 0.121 0.879 4 C 0.305 3.695 5 N -0.424 5.424 6 O -0.389 6.389 7 N -0.240 5.240 8 C -0.051 4.051 9 C -0.166 4.166 10 C 0.026 3.974 11 H 0.107 0.893 12 C -0.167 4.167 13 C -0.157 4.157 14 C 0.026 3.974 15 H 0.091 0.909 16 C -0.068 4.068 17 N -0.329 5.329 18 C 0.358 3.642 19 O -0.399 6.399 20 C -0.292 4.292 21 S 0.165 5.835 22 C -0.679 4.679 23 H 0.089 0.911 24 C -0.135 4.135 25 N -0.505 5.505 26 Si 0.743 3.257 27 H -0.200 1.200 28 H -0.209 1.209 29 H -0.200 1.200 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.225 0.775 34 H 0.232 0.768 35 H 0.057 0.943 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.100 0.900 39 H 0.091 0.909 40 H 0.097 0.903 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.061 0.939 44 H 0.101 0.899 45 H 0.108 0.892 46 H 0.101 0.899 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -25.122 2.826 -0.505 25.285 hybrid contribution -0.687 -1.843 0.855 2.144 sum -25.808 0.983 0.350 25.829 Atomic orbital electron populations 1.22430 0.95347 1.02996 1.03028 1.21597 0.93787 0.99008 0.90379 0.87904 1.20457 0.77997 0.86431 0.84602 1.43851 1.67048 1.21941 1.09585 1.90766 1.42942 1.19512 1.85705 1.61450 1.59045 1.02706 1.00769 1.21792 0.94714 0.88570 1.00018 1.21895 1.00360 0.97182 0.97150 1.21804 0.94124 0.86014 0.95410 0.89348 1.22556 0.97989 0.96728 0.99401 1.21936 0.98975 0.95268 0.99568 1.20644 0.88864 0.93875 0.93974 0.90939 1.22808 0.98340 0.96311 0.89341 1.48535 1.08993 1.07296 1.68075 1.19658 0.79558 0.89547 0.75395 1.90668 1.76475 1.20253 1.52458 1.23459 1.01381 1.00651 1.03681 1.85285 0.98551 1.12848 1.86802 1.22839 0.98678 0.94472 1.51954 0.91108 1.24964 0.96638 0.96829 0.95096 1.70021 1.12821 1.22401 1.45293 0.86259 0.78563 0.81828 0.79063 1.19980 1.20880 1.19969 0.91370 0.91719 0.91661 0.77489 0.76786 0.94349 0.91220 0.91589 0.89957 0.90939 0.90301 0.90572 0.90465 0.93912 0.89854 0.89209 0.89906 0.92297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.23 8.59 37.16 0.32 -0.91 16 2 C 0.06 0.67 2.68 -68.86 -0.18 0.48 16 3 H 0.10 0.98 7.92 -51.93 -0.41 0.57 16 4 C 0.52 6.43 7.00 -10.99 -0.08 6.36 16 5 N -0.86 -7.12 8.87 31.22 0.28 -6.84 16 6 O -0.52 -8.73 14.92 5.55 0.08 -8.64 16 7 N -0.52 -6.44 3.55 -227.32 -0.81 -7.25 16 8 C 0.08 0.87 3.22 -4.36 -0.01 0.86 16 9 C -0.13 -1.63 5.04 -27.15 -0.14 -1.76 16 10 C 0.13 1.65 3.49 -66.50 -0.23 1.41 16 11 H 0.09 1.14 7.71 -51.93 -0.40 0.74 16 12 C -0.13 -1.14 5.90 -25.53 -0.15 -1.30 16 13 C -0.12 -1.04 6.06 -26.94 -0.16 -1.21 16 14 C 0.13 1.63 2.50 -68.90 -0.17 1.46 16 15 H 0.07 1.00 7.97 -51.93 -0.41 0.59 16 16 C 0.06 0.67 5.12 -2.98 -0.02 0.66 16 17 N -0.59 -9.36 2.16 -157.67 -0.34 -9.70 16 18 C 0.57 11.97 7.93 -10.98 -0.09 11.89 16 19 O -0.52 -12.83 16.20 5.55 0.09 -12.74 16 20 C -0.14 -3.22 5.31 36.01 0.19 -3.03 16 21 S -0.06 -1.78 20.57 -107.50 -2.21 -3.99 16 22 C -0.53 -15.95 9.50 30.94 0.29 -15.65 16 23 H 0.07 2.03 7.80 -52.49 -0.41 1.62 16 24 C 0.07 2.19 5.49 -17.43 -0.10 2.09 16 25 N -0.87 -27.17 13.22 55.49 0.73 -26.43 16 26 Si 0.92 22.33 29.55 -169.99 -5.02 17.30 16 27 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 28 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 29 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 30 H 0.07 0.42 6.89 -51.93 -0.36 0.07 16 31 H 0.06 0.49 6.51 -51.93 -0.34 0.15 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.40 1.97 8.83 -40.82 -0.36 1.61 16 34 H 0.40 3.17 8.93 -40.82 -0.36 2.81 16 35 H 0.04 0.36 5.49 -51.93 -0.29 0.08 16 36 H 0.07 0.83 5.08 -51.93 -0.26 0.57 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.08 1.40 7.18 -51.93 -0.37 1.02 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.08 0.59 6.54 -51.93 -0.34 0.25 16 41 H 0.08 0.52 7.58 -51.93 -0.39 0.12 16 42 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.04 0.36 6.52 -51.93 -0.34 0.02 16 44 H 0.08 1.04 8.02 -51.93 -0.42 0.62 16 45 H 0.09 2.04 7.70 -51.92 -0.40 1.64 16 46 H 0.08 1.76 8.01 -51.91 -0.42 1.34 16 47 H 0.27 7.76 8.31 -40.82 -0.34 7.42 16 LS Contribution 373.75 15.07 5.63 5.63 Total: -1.00 -38.90 373.75 -9.20 -48.10 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -7.11 Total: 3.22 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: -0.52 Total: 1.34 kcal Atomic # 7 Polarization: -50.08 SS G_CDS: -0.14 Total: -50.22 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: 0.17 Total: -21.38 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Atomic # 16 Polarization: -1.78 SS G_CDS: -2.21 Total: -3.99 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -38.90 -9.20 -48.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723625381.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.756 kcal (2) G-P(sol) polarization free energy of solvation -38.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds