Wall clock time and date at job start Wed Apr 1 2020 00:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.46993 * 2 1 4 4 C 1.50694 * 109.47215 * 119.99989 * 2 1 3 5 5 N 1.34778 * 120.00486 * 286.06942 * 4 2 1 6 6 O 1.21285 * 120.00040 * 106.06857 * 4 2 1 7 7 N 1.46901 * 109.46653 * 240.00142 * 2 1 3 8 8 C 1.45959 * 111.00100 * 309.09485 * 7 2 1 9 9 C 1.52952 * 110.13764 * 223.12212 * 8 7 2 10 10 C 1.52237 * 111.72839 * 293.51405 * 9 8 7 11 11 H 1.09002 * 111.03006 * 180.64597 * 10 9 8 12 12 C 1.54205 * 106.17630 * 302.10086 * 10 9 8 13 13 C 1.54103 * 105.43495 * 106.92888 * 12 10 9 14 14 C 1.51457 * 104.58043 * 352.36911 * 13 12 10 15 15 H 1.09007 * 106.69038 * 138.00379 * 14 13 12 16 16 C 1.49529 * 111.00109 * 75.75721 * 7 2 1 17 17 N 1.47304 * 109.39588 * 22.58226 * 14 13 12 18 18 C 1.34777 * 127.71777 * 151.82062 * 17 14 13 19 19 O 1.21289 * 120.00110 * 359.69727 * 18 17 14 20 20 C 1.50701 * 120.00071 * 179.70320 * 18 17 14 21 21 S 1.80998 * 109.47278 * 179.97438 * 20 18 17 22 22 C 1.76198 * 99.99764 * 179.97438 * 21 20 18 23 23 H 1.07997 * 120.00562 * 0.02562 * 22 21 20 24 24 C 1.38806 * 119.99730 * 180.02562 * 22 21 20 25 25 N 1.31631 * 119.99990 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 119.99912 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.46829 * 59.99473 * 26 24 22 28 28 H 1.48495 * 109.47057 * 179.97438 * 26 24 22 29 29 H 1.48495 * 109.47194 * 299.99856 * 26 24 22 30 30 H 1.08997 * 109.47370 * 65.51052 * 1 2 3 31 31 H 1.08995 * 109.47154 * 185.52105 * 1 2 3 32 32 H 1.09006 * 109.46519 * 305.51249 * 1 2 3 33 33 H 0.97000 * 119.99494 * 359.97438 * 5 4 2 34 34 H 0.96997 * 120.00185 * 180.02562 * 5 4 2 35 35 H 1.08997 * 109.35730 * 102.91817 * 8 7 2 36 36 H 1.08996 * 109.35527 * 343.32773 * 8 7 2 37 37 H 1.09000 * 109.02965 * 172.93629 * 9 8 7 38 38 H 1.09000 * 108.96888 * 54.05052 * 9 8 7 39 39 H 1.08997 * 110.24645 * 226.08120 * 12 10 9 40 40 H 1.08996 * 110.24324 * 348.07619 * 12 10 9 41 41 H 1.08998 * 110.33596 * 233.64498 * 13 12 10 42 42 H 1.08999 * 110.62486 * 111.24009 * 13 12 10 43 43 H 1.09007 * 109.56661 * 294.82056 * 16 7 2 44 44 H 1.09001 * 109.56610 * 55.16998 * 16 7 2 45 45 H 1.09001 * 109.46948 * 299.99993 * 20 18 17 46 46 H 1.09002 * 109.46842 * 59.99539 * 20 18 17 47 47 H 0.97005 * 119.99698 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.9525 -0.1106 2.4348 6 8 2.5087 -1.8219 1.1370 7 7 2.0196 -0.6925 -1.1995 8 6 1.3838 -1.9981 -1.3459 9 6 2.4221 -3.0476 -1.7457 10 6 2.9790 -2.7874 -3.1385 11 1 3.7089 -3.5478 -3.4162 12 6 1.7676 -2.7886 -4.0927 13 6 1.5512 -1.3135 -4.4826 14 6 2.5056 -0.5408 -3.5961 15 1 2.9607 0.2277 -4.2210 16 6 1.8744 0.1695 -2.4127 17 7 3.5904 -1.4325 -3.1511 18 6 4.8532 -1.0945 -2.8229 19 8 5.2062 0.0642 -2.8839 20 6 5.8266 -2.1564 -2.3803 21 16 7.4264 -1.3934 -2.0134 22 6 8.3431 -2.8199 -1.5346 23 1 7.8706 -3.7910 -1.5359 24 6 9.6726 -2.6955 -1.1556 25 7 10.2486 -1.5119 -1.1545 26 14 10.6447 -4.2079 -0.6486 27 1 10.6818 -5.1734 -1.7763 28 1 12.0303 -3.8094 -0.2929 29 1 9.9949 -4.8433 0.5258 30 1 -0.3634 0.4260 -0.9352 31 1 -0.3633 -1.0228 0.0989 32 1 -0.3632 0.5970 0.8366 33 1 1.5719 0.7785 2.5094 34 1 2.2762 -0.5678 3.2266 35 1 0.6135 -1.9406 -2.1149 36 1 0.9259 -2.2851 -0.3993 37 1 1.9566 -4.0331 -1.7275 38 1 3.2407 -3.0282 -1.0263 39 1 1.9848 -3.3874 -4.9772 40 1 0.8857 -3.1751 -3.5820 41 1 0.5218 -1.0161 -4.2828 42 1 1.7949 -1.1543 -5.5330 43 1 0.8170 0.3438 -2.6122 44 1 2.3781 1.1217 -2.2464 45 1 5.4450 -2.6491 -1.4860 46 1 5.9490 -2.8915 -3.1759 47 1 11.1779 -1.4250 -0.8900 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001723625381.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:36 Heat of formation + Delta-G solvation = -78.378957 kcal Electronic energy + Delta-G solvation = -29543.620315 eV Core-core repulsion = 25658.753156 eV Total energy + Delta-G solvation = -3884.867160 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.97463 -40.59544 -39.12199 -37.03841 -34.71491 -34.61123 -34.04656 -33.04962 -31.59850 -30.30806 -27.81314 -27.64160 -27.14304 -25.44372 -23.45783 -22.73468 -21.34357 -20.28127 -20.14057 -19.37126 -18.45461 -18.21879 -17.64085 -16.96600 -16.90706 -16.48502 -16.25138 -16.00296 -15.88422 -15.66226 -15.25817 -15.04398 -14.74402 -14.70065 -14.40722 -14.21189 -13.79181 -13.52499 -13.43574 -13.25375 -13.15659 -13.01713 -12.88933 -12.71100 -12.63760 -12.50183 -12.24211 -12.03186 -11.76808 -11.63375 -11.54518 -11.19499 -11.15133 -10.86249 -10.69471 -10.55804 -10.32053 -9.54094 -9.03499 -8.68504 -8.36493 -6.14765 1.22843 1.41206 1.41835 1.53102 1.71228 1.71855 2.11857 2.26046 2.48300 2.96728 3.06405 3.24181 3.49388 3.64800 3.87097 3.94485 3.97393 4.05253 4.09750 4.17207 4.22377 4.25258 4.29366 4.43533 4.44620 4.46908 4.60113 4.69059 4.72640 4.77440 4.87158 4.96939 5.02827 5.03371 5.12162 5.18709 5.25282 5.29678 5.37774 5.46825 5.62578 5.92773 6.09742 6.17077 6.29864 6.55800 6.62328 7.03686 7.27828 7.43658 8.72934 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012192 B = 0.003764 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2296.094558 B = 7436.201445 C = 8494.065322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.065 3.935 3 H 0.106 0.894 4 C 0.511 3.489 5 N -0.842 5.842 6 O -0.572 6.572 7 N -0.551 5.551 8 C 0.085 3.915 9 C -0.123 4.123 10 C 0.119 3.881 11 H 0.080 0.920 12 C -0.117 4.117 13 C -0.109 4.109 14 C 0.125 3.875 15 H 0.052 0.948 16 C 0.064 3.936 17 N -0.585 5.585 18 C 0.566 3.434 19 O -0.571 6.571 20 C -0.113 4.113 21 S -0.142 6.142 22 C -0.550 4.550 23 H 0.075 0.925 24 C 0.016 3.984 25 N -0.910 5.910 26 Si 0.999 3.001 27 H -0.260 1.260 28 H -0.273 1.273 29 H -0.265 1.265 30 H 0.083 0.917 31 H 0.059 0.941 32 H 0.085 0.915 33 H 0.415 0.585 34 H 0.404 0.596 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.088 0.912 38 H 0.030 0.970 39 H 0.087 0.913 40 H 0.105 0.895 41 H 0.111 0.889 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.062 0.938 45 H 0.084 0.916 46 H 0.096 0.904 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.064 0.574 -0.889 30.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.047 4.047 3 H 0.124 0.876 4 C 0.296 3.704 5 N -0.407 5.407 6 O -0.450 6.450 7 N -0.276 5.276 8 C -0.043 4.043 9 C -0.162 4.162 10 C 0.016 3.984 11 H 0.098 0.902 12 C -0.155 4.155 13 C -0.147 4.147 14 C 0.021 3.979 15 H 0.070 0.930 16 C -0.063 4.063 17 N -0.318 5.318 18 C 0.354 3.646 19 O -0.450 6.450 20 C -0.264 4.264 21 S 0.085 5.915 22 C -0.698 4.698 23 H 0.093 0.907 24 C -0.189 4.189 25 N -0.546 5.546 26 Si 0.820 3.180 27 H -0.184 1.184 28 H -0.197 1.197 29 H -0.190 1.190 30 H 0.102 0.898 31 H 0.078 0.922 32 H 0.104 0.896 33 H 0.246 0.754 34 H 0.235 0.765 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.107 0.893 38 H 0.049 0.951 39 H 0.106 0.894 40 H 0.123 0.877 41 H 0.130 0.870 42 H 0.104 0.896 43 H 0.103 0.897 44 H 0.080 0.920 45 H 0.102 0.898 46 H 0.114 0.886 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -28.537 1.633 -1.135 28.606 hybrid contribution 0.263 -1.425 1.095 1.816 sum -28.274 0.208 -0.040 28.275 Atomic orbital electron populations 1.22346 0.92082 1.03295 1.04812 1.21646 0.96230 0.98275 0.88519 0.87583 1.21035 0.77302 0.85988 0.86114 1.43727 1.65749 1.22521 1.08675 1.90746 1.45648 1.21967 1.86641 1.61285 1.60894 1.03641 1.01796 1.21713 0.94469 0.87504 1.00578 1.21873 0.99386 0.99297 0.95650 1.22143 0.95509 0.83896 0.96853 0.90206 1.22541 0.96574 0.97280 0.99056 1.21972 0.99588 0.94151 0.98976 1.21088 0.88529 0.93478 0.94848 0.93008 1.22734 1.00278 0.94925 0.88346 1.48403 1.07952 1.09969 1.65446 1.19221 0.81225 0.88201 0.75967 1.90634 1.77847 1.21481 1.55064 1.23212 0.98342 1.00989 1.03837 1.85371 1.03189 1.15551 1.87342 1.23139 0.99488 0.94367 1.52793 0.90668 1.26123 0.97598 1.00677 0.94459 1.70178 1.13411 1.25115 1.45923 0.85015 0.76835 0.77099 0.79101 1.18446 1.19741 1.19012 0.89772 0.92157 0.89583 0.75367 0.76531 0.91141 0.91939 0.89350 0.95116 0.89392 0.87708 0.87023 0.89624 0.89699 0.91988 0.89752 0.88592 0.91865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.76 8.59 71.98 0.62 -1.14 16 2 C 0.07 1.27 2.68 44.17 0.12 1.38 16 3 H 0.11 1.93 7.92 -2.39 -0.02 1.91 16 4 C 0.51 12.67 7.00 87.66 0.61 13.29 16 5 N -0.84 -13.55 8.87 -173.53 -1.54 -15.09 16 6 O -0.57 -20.23 14.92 -3.05 -0.05 -20.28 16 7 N -0.55 -13.26 3.55 -873.11 -3.10 -16.36 16 8 C 0.08 1.76 3.22 86.47 0.28 2.04 16 9 C -0.12 -3.08 5.04 30.33 0.15 -2.92 16 10 C 0.12 2.86 3.49 44.73 0.16 3.01 16 11 H 0.08 2.03 7.71 -2.39 -0.02 2.01 16 12 C -0.12 -1.60 5.90 31.38 0.18 -1.41 16 13 C -0.11 -1.44 6.06 30.46 0.18 -1.25 16 14 C 0.12 2.90 2.50 43.93 0.11 3.01 16 15 H 0.05 1.42 7.97 -2.38 -0.02 1.40 16 16 C 0.06 1.33 5.12 85.39 0.44 1.76 16 17 N -0.59 -18.55 2.16 -771.13 -1.67 -20.22 16 18 C 0.57 25.02 7.93 87.66 0.69 25.71 16 19 O -0.57 -29.72 16.20 -3.06 -0.05 -29.77 16 20 C -0.11 -5.42 5.31 71.24 0.38 -5.04 16 21 S -0.14 -8.67 20.57 -56.49 -1.16 -9.84 16 22 C -0.55 -34.17 9.50 67.96 0.65 -33.53 16 23 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 24 C 0.02 0.98 5.49 84.86 0.47 1.45 16 25 N -0.91 -58.50 13.22 21.65 0.29 -58.21 16 26 Si 1.00 46.24 29.55 68.60 2.03 48.27 16 27 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 28 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 29 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 30 H 0.08 0.65 6.89 -2.39 -0.02 0.63 16 31 H 0.06 0.73 6.51 -2.39 -0.02 0.71 16 32 H 0.09 0.56 8.14 -2.38 -0.02 0.54 16 33 H 0.42 3.53 8.83 -92.71 -0.82 2.72 16 34 H 0.40 6.35 8.93 -92.71 -0.83 5.52 16 35 H 0.07 0.99 5.49 -2.39 -0.01 0.97 16 36 H 0.06 1.41 5.08 -2.39 -0.01 1.40 16 37 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.03 1.09 7.18 -2.39 -0.02 1.07 16 39 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.10 0.97 6.54 -2.39 -0.02 0.96 16 41 H 0.11 0.78 7.58 -2.39 -0.02 0.77 16 42 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.09 1.03 6.52 -2.38 -0.02 1.01 16 44 H 0.06 1.53 8.02 -2.39 -0.02 1.51 16 45 H 0.08 4.11 7.70 -2.39 -0.02 4.09 16 46 H 0.10 4.26 8.01 -2.39 -0.02 4.25 16 47 H 0.27 16.16 8.31 -92.70 -0.77 15.39 16 Total: -1.00 -92.38 373.75 -0.85 -93.23 By element: Atomic # 1 Polarization: 22.54 SS G_CDS: -0.63 Total: 21.91 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: 5.04 Total: 6.35 kcal Atomic # 7 Polarization: -103.86 SS G_CDS: -6.02 Total: -109.88 kcal Atomic # 8 Polarization: -49.95 SS G_CDS: -0.09 Total: -50.05 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Atomic # 16 Polarization: -8.67 SS G_CDS: -1.16 Total: -9.84 kcal Total: -92.38 -0.85 -93.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723625381.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.851 kcal (2) G-P(sol) polarization free energy of solvation -92.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds