Wall clock time and date at job start Wed Apr 1 2020 00:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.46791 * 2 1 4 4 C 1.50701 * 109.47448 * 240.00012 * 2 1 3 5 5 N 1.34769 * 120.00008 * 86.59263 * 4 2 1 6 6 O 1.21283 * 119.99742 * 266.59536 * 4 2 1 7 7 N 1.46904 * 109.47142 * 119.99568 * 2 1 3 8 8 C 1.45960 * 110.99823 * 183.81717 * 7 2 1 9 9 C 1.52953 * 110.13634 * 223.12045 * 8 7 2 10 10 C 1.52236 * 111.72992 * 293.51536 * 9 8 7 11 11 H 1.09005 * 111.02960 * 180.64783 * 10 9 8 12 12 C 1.54207 * 106.17744 * 302.10206 * 10 9 8 13 13 C 1.54094 * 105.43853 * 106.92623 * 12 10 9 14 14 C 1.51465 * 104.58065 * 352.37258 * 13 12 10 15 15 H 1.09004 * 106.69406 * 138.00046 * 14 13 12 16 16 C 1.49526 * 111.00108 * 310.47800 * 7 2 1 17 17 N 1.47301 * 109.39485 * 22.57692 * 14 13 12 18 18 C 1.34780 * 127.71818 * 151.81757 * 17 14 13 19 19 O 1.21284 * 120.00059 * 359.70975 * 18 17 14 20 20 C 1.50697 * 120.00017 * 179.70344 * 18 17 14 21 21 S 1.81002 * 109.47190 * 180.02562 * 20 18 17 22 22 C 1.76197 * 99.99913 * 180.02562 * 21 20 18 23 23 H 1.08003 * 120.00232 * 359.97438 * 22 21 20 24 24 C 1.38802 * 119.99967 * 180.02562 * 22 21 20 25 25 N 1.31634 * 119.99899 * 359.97438 * 24 22 21 26 26 Si 1.86793 * 120.00120 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47253 * 89.99727 * 26 24 22 28 28 H 1.48500 * 109.47268 * 209.99734 * 26 24 22 29 29 H 1.48497 * 109.47153 * 329.99810 * 26 24 22 30 30 H 1.08998 * 109.47098 * 300.00334 * 1 2 3 31 31 H 1.08998 * 109.46987 * 60.00158 * 1 2 3 32 32 H 1.08998 * 109.47041 * 180.02562 * 1 2 3 33 33 H 0.96998 * 120.00608 * 0.02562 * 5 4 2 34 34 H 0.97003 * 119.99966 * 180.02562 * 5 4 2 35 35 H 1.09000 * 109.35773 * 102.92104 * 8 7 2 36 36 H 1.09000 * 109.36202 * 343.32721 * 8 7 2 37 37 H 1.09000 * 109.02965 * 172.93509 * 9 8 7 38 38 H 1.09006 * 109.02832 * 54.09394 * 9 8 7 39 39 H 1.09002 * 110.24802 * 226.08232 * 12 10 9 40 40 H 1.09005 * 110.24026 * 348.07330 * 12 10 9 41 41 H 1.08995 * 110.34352 * 233.65406 * 13 12 10 42 42 H 1.08998 * 110.62447 * 111.23600 * 13 12 10 43 43 H 1.09003 * 109.56790 * 294.82163 * 16 7 2 44 44 H 1.08998 * 109.56853 * 55.05359 * 16 7 2 45 45 H 1.08997 * 109.47292 * 300.00532 * 20 18 17 46 46 H 1.08998 * 109.47109 * 60.00356 * 20 18 17 47 47 H 0.97003 * 120.00082 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 7 2.1917 -0.0306 -2.3832 6 8 2.2934 -1.8939 -1.1833 7 7 2.0197 -0.6924 1.1995 8 6 3.4759 -0.6338 1.2794 9 6 4.0357 -1.9954 1.6945 10 6 3.6358 -2.3591 3.1176 11 1 4.0499 -3.3255 3.4054 12 6 4.1667 -1.2242 4.0165 13 6 2.9223 -0.4194 4.4391 14 6 1.7922 -1.0060 3.6188 15 1 0.9343 -1.0938 4.2854 16 6 1.3440 -0.1764 2.4295 17 7 2.1514 -2.3708 3.1967 18 6 1.3197 -3.3987 2.9352 19 8 0.1208 -3.2519 3.0453 20 6 1.8795 -4.7303 2.5057 21 16 0.5217 -5.8954 2.2314 22 6 1.4361 -7.3239 1.7542 23 1 2.5144 -7.2840 1.7068 24 6 0.7707 -8.5003 1.4381 25 7 -0.5435 -8.5488 1.4954 26 14 1.7400 -10.0146 0.9316 27 1 2.0701 -10.8171 2.1367 28 1 0.9258 -10.8344 -0.0013 29 1 2.9948 -9.5962 0.2566 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.9833 0.9160 -2.4209 34 1 2.5147 -0.4880 -3.1753 35 1 3.7675 0.1161 2.0147 36 1 3.8805 -0.3584 0.3055 37 1 5.1233 -1.9680 1.6269 38 1 3.6577 -2.7577 1.0132 39 1 4.6662 -1.6388 4.8921 40 1 4.8522 -0.5885 3.4560 41 1 3.0554 0.6361 4.2023 42 1 2.7255 -0.5476 5.5034 43 1 1.6188 0.8666 2.5867 44 1 0.2631 -0.2555 2.3127 45 1 2.4437 -4.6062 1.5814 46 1 2.5378 -5.1158 3.2842 47 1 -1.0086 -9.3710 1.2749 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001723625382.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:39 Heat of formation + Delta-G solvation = -45.518130 kcal Electronic energy + Delta-G solvation = -29580.052396 eV Core-core repulsion = 25696.610188 eV Total energy + Delta-G solvation = -3883.442207 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.90616 -39.51904 -37.62716 -36.00809 -33.76530 -33.20089 -32.29376 -31.78983 -31.04472 -28.64274 -27.13694 -26.26092 -25.34654 -24.10628 -22.25123 -21.75563 -20.33228 -19.71748 -18.50330 -17.71289 -17.44858 -17.02675 -16.70423 -16.02801 -15.53208 -15.01923 -14.77751 -14.68585 -14.59883 -14.18768 -13.91799 -13.86212 -13.69856 -13.44229 -13.33415 -12.78587 -12.55047 -12.35423 -12.33719 -12.17576 -11.93910 -11.71127 -11.50795 -11.40712 -11.20741 -10.95782 -10.87218 -10.72756 -10.68945 -10.64246 -10.34948 -9.77530 -9.74984 -9.66596 -9.12857 -8.93346 -8.26659 -8.20133 -8.04805 -6.31692 -6.08308 -3.75976 2.61286 3.01976 3.23516 3.31148 3.34969 3.38866 3.43447 3.74922 3.89632 4.33489 4.36054 4.47401 4.64825 4.72951 4.81485 4.90388 4.94937 4.96657 5.08729 5.23698 5.25545 5.26721 5.30921 5.41243 5.42694 5.50449 5.57890 5.63263 5.70170 5.75515 5.84591 5.92613 5.96663 5.99679 6.04483 6.13218 6.17968 6.33414 6.48096 6.63168 6.72816 6.87817 7.06561 7.26678 7.73040 8.05342 8.26433 8.49127 8.89156 9.37051 10.99307 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011712 B = 0.003851 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2390.118120 B = 7269.711289 C = 8237.999094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.073 3.927 3 H 0.052 0.948 4 C 0.513 3.487 5 N -0.864 5.864 6 O -0.502 6.502 7 N -0.515 5.515 8 C 0.073 3.927 9 C -0.130 4.130 10 C 0.133 3.867 11 H 0.090 0.910 12 C -0.129 4.129 13 C -0.120 4.120 14 C 0.131 3.869 15 H 0.073 0.927 16 C 0.057 3.943 17 N -0.594 5.594 18 C 0.571 3.429 19 O -0.522 6.522 20 C -0.141 4.141 21 S -0.061 6.061 22 C -0.530 4.530 23 H 0.071 0.929 24 C 0.073 3.927 25 N -0.870 5.870 26 Si 0.916 3.084 27 H -0.278 1.278 28 H -0.283 1.283 29 H -0.272 1.272 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.396 0.604 34 H 0.401 0.599 35 H 0.045 0.955 36 H 0.056 0.944 37 H 0.067 0.933 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.040 0.960 44 H 0.091 0.909 45 H 0.090 0.910 46 H 0.082 0.918 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.421 25.707 -0.551 27.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.039 4.039 3 H 0.070 0.930 4 C 0.296 3.704 5 N -0.429 5.429 6 O -0.374 6.374 7 N -0.241 5.241 8 C -0.055 4.055 9 C -0.169 4.169 10 C 0.028 3.972 11 H 0.108 0.892 12 C -0.167 4.167 13 C -0.158 4.158 14 C 0.026 3.974 15 H 0.091 0.909 16 C -0.071 4.071 17 N -0.329 5.329 18 C 0.360 3.640 19 O -0.397 6.397 20 C -0.291 4.291 21 S 0.166 5.834 22 C -0.678 4.678 23 H 0.089 0.911 24 C -0.136 4.136 25 N -0.505 5.505 26 Si 0.743 3.257 27 H -0.204 1.204 28 H -0.208 1.208 29 H -0.197 1.197 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.224 0.776 34 H 0.231 0.769 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.101 0.899 39 H 0.091 0.909 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.096 0.904 43 H 0.058 0.942 44 H 0.109 0.891 45 H 0.108 0.892 46 H 0.100 0.900 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 8.381 24.414 -0.235 25.814 hybrid contribution 2.334 0.067 -0.964 2.526 sum 10.715 24.482 -1.199 26.751 Atomic orbital electron populations 1.21889 0.91779 1.04571 1.02225 1.21534 0.97527 0.94943 0.89909 0.92996 1.20543 0.77472 0.87753 0.84649 1.43929 1.71744 1.14033 1.13217 1.90840 1.47393 1.14894 1.84253 1.61354 1.05735 1.56720 1.00299 1.21791 0.86849 0.97136 0.99730 1.21936 0.99146 0.98464 0.97396 1.21757 0.81499 0.98846 0.95051 0.89233 1.22559 0.97576 0.96881 0.99683 1.21943 0.94360 0.99487 0.99992 1.20655 0.98500 0.83837 0.94423 0.90893 1.22906 1.00181 0.95251 0.88774 1.48527 1.05809 1.09380 1.69198 1.19645 0.85493 0.83564 0.75296 1.90665 1.14554 1.82957 1.51496 1.23450 1.05873 0.96114 1.03696 1.85289 1.06074 1.03612 1.88425 1.22877 0.94991 0.97222 1.52713 0.91094 1.24963 0.95053 0.98447 0.95114 1.70031 1.06760 1.27641 1.46106 0.86201 0.79576 0.81497 0.78433 1.20360 1.20837 1.19723 0.91082 0.91941 0.90198 0.77609 0.76872 0.93715 0.92522 0.91467 0.89917 0.90869 0.90362 0.90582 0.90421 0.94151 0.89073 0.89161 0.90000 0.92372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 8.60 37.16 0.32 -1.24 16 2 C 0.07 0.78 2.43 -68.86 -0.17 0.61 16 3 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 4 C 0.51 6.40 5.96 -10.99 -0.07 6.33 16 5 N -0.86 -6.68 8.87 31.22 0.28 -6.41 16 6 O -0.50 -9.14 17.15 5.56 0.10 -9.04 16 7 N -0.51 -6.49 3.40 -227.32 -0.77 -7.27 16 8 C 0.07 0.80 4.64 -4.36 -0.02 0.78 16 9 C -0.13 -1.61 5.12 -27.14 -0.14 -1.75 16 10 C 0.13 1.64 3.49 -66.50 -0.23 1.41 16 11 H 0.09 1.13 7.71 -51.93 -0.40 0.73 16 12 C -0.13 -1.11 5.89 -25.53 -0.15 -1.26 16 13 C -0.12 -1.03 6.06 -26.94 -0.16 -1.19 16 14 C 0.13 1.62 2.50 -68.89 -0.17 1.45 16 15 H 0.07 1.01 7.97 -51.93 -0.41 0.59 16 16 C 0.06 0.64 4.83 -2.98 -0.01 0.62 16 17 N -0.59 -9.33 2.16 -157.66 -0.34 -9.67 16 18 C 0.57 12.06 7.93 -10.99 -0.09 11.97 16 19 O -0.52 -12.83 16.20 5.55 0.09 -12.74 16 20 C -0.14 -3.23 5.31 36.00 0.19 -3.04 16 21 S -0.06 -1.77 20.57 -107.50 -2.21 -3.98 16 22 C -0.53 -16.01 9.50 30.94 0.29 -15.72 16 23 H 0.07 2.05 7.80 -52.48 -0.41 1.64 16 24 C 0.07 2.18 5.49 -17.43 -0.10 2.09 16 25 N -0.87 -27.36 13.22 55.49 0.73 -26.63 16 26 Si 0.92 22.48 29.55 -169.99 -5.02 17.45 16 27 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 28 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 29 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 30 H 0.07 0.66 6.19 -51.93 -0.32 0.34 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.40 1.69 8.83 -40.82 -0.36 1.32 16 34 H 0.40 2.91 8.93 -40.82 -0.36 2.54 16 35 H 0.04 0.40 5.49 -51.93 -0.29 0.11 16 36 H 0.06 0.62 6.69 -51.93 -0.35 0.27 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.08 1.37 7.70 -51.93 -0.40 0.97 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.08 0.56 6.55 -51.93 -0.34 0.22 16 41 H 0.08 0.50 7.58 -51.93 -0.39 0.11 16 42 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.04 0.34 7.63 -51.93 -0.40 -0.05 16 44 H 0.09 1.14 5.94 -51.93 -0.31 0.84 16 45 H 0.09 2.07 7.70 -51.92 -0.40 1.67 16 46 H 0.08 1.74 8.01 -51.92 -0.42 1.32 16 47 H 0.27 7.78 8.31 -40.82 -0.34 7.44 16 LS Contribution 378.09 15.07 5.70 5.70 Total: -1.00 -39.58 378.09 -9.18 -48.77 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -7.23 Total: 2.75 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: -0.50 Total: 1.07 kcal Atomic # 7 Polarization: -49.87 SS G_CDS: -0.10 Total: -49.97 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: 0.19 Total: -21.78 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.45 kcal Atomic # 16 Polarization: -1.77 SS G_CDS: -2.21 Total: -3.98 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -39.58 -9.18 -48.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723625382.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.250 kcal (2) G-P(sol) polarization free energy of solvation -39.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds