Wall clock time and date at job start Wed Apr 1 2020 00:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.46791 * 2 1 4 4 C 1.50701 * 109.47448 * 240.00012 * 2 1 3 5 5 N 1.34769 * 120.00008 * 86.59263 * 4 2 1 6 6 O 1.21283 * 119.99742 * 266.59536 * 4 2 1 7 7 N 1.46904 * 109.47142 * 119.99568 * 2 1 3 8 8 C 1.45960 * 110.99823 * 183.81717 * 7 2 1 9 9 C 1.52953 * 110.13634 * 223.12045 * 8 7 2 10 10 C 1.52236 * 111.72992 * 293.51536 * 9 8 7 11 11 H 1.09005 * 111.02960 * 180.64783 * 10 9 8 12 12 C 1.54207 * 106.17744 * 302.10206 * 10 9 8 13 13 C 1.54094 * 105.43853 * 106.92623 * 12 10 9 14 14 C 1.51465 * 104.58065 * 352.37258 * 13 12 10 15 15 H 1.09004 * 106.69406 * 138.00046 * 14 13 12 16 16 C 1.49526 * 111.00108 * 310.47800 * 7 2 1 17 17 N 1.47301 * 109.39485 * 22.57692 * 14 13 12 18 18 C 1.34780 * 127.71818 * 151.81757 * 17 14 13 19 19 O 1.21284 * 120.00059 * 359.70975 * 18 17 14 20 20 C 1.50697 * 120.00017 * 179.70344 * 18 17 14 21 21 S 1.81002 * 109.47190 * 180.02562 * 20 18 17 22 22 C 1.76197 * 99.99913 * 180.02562 * 21 20 18 23 23 H 1.08003 * 120.00232 * 359.97438 * 22 21 20 24 24 C 1.38802 * 119.99967 * 180.02562 * 22 21 20 25 25 N 1.31634 * 119.99899 * 359.97438 * 24 22 21 26 26 Si 1.86793 * 120.00120 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47253 * 89.99727 * 26 24 22 28 28 H 1.48500 * 109.47268 * 209.99734 * 26 24 22 29 29 H 1.48497 * 109.47153 * 329.99810 * 26 24 22 30 30 H 1.08998 * 109.47098 * 300.00334 * 1 2 3 31 31 H 1.08998 * 109.46987 * 60.00158 * 1 2 3 32 32 H 1.08998 * 109.47041 * 180.02562 * 1 2 3 33 33 H 0.96998 * 120.00608 * 0.02562 * 5 4 2 34 34 H 0.97003 * 119.99966 * 180.02562 * 5 4 2 35 35 H 1.09000 * 109.35773 * 102.92104 * 8 7 2 36 36 H 1.09000 * 109.36202 * 343.32721 * 8 7 2 37 37 H 1.09000 * 109.02965 * 172.93509 * 9 8 7 38 38 H 1.09006 * 109.02832 * 54.09394 * 9 8 7 39 39 H 1.09002 * 110.24802 * 226.08232 * 12 10 9 40 40 H 1.09005 * 110.24026 * 348.07330 * 12 10 9 41 41 H 1.08995 * 110.34352 * 233.65406 * 13 12 10 42 42 H 1.08998 * 110.62447 * 111.23600 * 13 12 10 43 43 H 1.09003 * 109.56790 * 294.82163 * 16 7 2 44 44 H 1.08998 * 109.56853 * 55.05359 * 16 7 2 45 45 H 1.08997 * 109.47292 * 300.00532 * 20 18 17 46 46 H 1.08998 * 109.47109 * 60.00356 * 20 18 17 47 47 H 0.97003 * 120.00082 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 7 2.1917 -0.0306 -2.3832 6 8 2.2934 -1.8939 -1.1833 7 7 2.0197 -0.6924 1.1995 8 6 3.4759 -0.6338 1.2794 9 6 4.0357 -1.9954 1.6945 10 6 3.6358 -2.3591 3.1176 11 1 4.0499 -3.3255 3.4054 12 6 4.1667 -1.2242 4.0165 13 6 2.9223 -0.4194 4.4391 14 6 1.7922 -1.0060 3.6188 15 1 0.9343 -1.0938 4.2854 16 6 1.3440 -0.1764 2.4295 17 7 2.1514 -2.3708 3.1967 18 6 1.3197 -3.3987 2.9352 19 8 0.1208 -3.2519 3.0453 20 6 1.8795 -4.7303 2.5057 21 16 0.5217 -5.8954 2.2314 22 6 1.4361 -7.3239 1.7542 23 1 2.5144 -7.2840 1.7068 24 6 0.7707 -8.5003 1.4381 25 7 -0.5435 -8.5488 1.4954 26 14 1.7400 -10.0146 0.9316 27 1 2.0701 -10.8171 2.1367 28 1 0.9258 -10.8344 -0.0013 29 1 2.9948 -9.5962 0.2566 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.9833 0.9160 -2.4209 34 1 2.5147 -0.4880 -3.1753 35 1 3.7675 0.1161 2.0147 36 1 3.8805 -0.3584 0.3055 37 1 5.1233 -1.9680 1.6269 38 1 3.6577 -2.7577 1.0132 39 1 4.6662 -1.6388 4.8921 40 1 4.8522 -0.5885 3.4560 41 1 3.0554 0.6361 4.2023 42 1 2.7255 -0.5476 5.5034 43 1 1.6188 0.8666 2.5867 44 1 0.2631 -0.2555 2.3127 45 1 2.4437 -4.6062 1.5814 46 1 2.5378 -5.1158 3.2842 47 1 -1.0086 -9.3710 1.2749 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001723625382.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:38 Heat of formation + Delta-G solvation = -77.698453 kcal Electronic energy + Delta-G solvation = -29581.447839 eV Core-core repulsion = 25696.610188 eV Total energy + Delta-G solvation = -3884.837651 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.93769 -40.58089 -39.12104 -36.98733 -34.66989 -34.61091 -34.14252 -33.09692 -31.88109 -30.31139 -28.09940 -27.67603 -27.13048 -25.04526 -23.34649 -22.73157 -21.24924 -20.64620 -20.11460 -19.26653 -18.52178 -18.16344 -17.79614 -17.12990 -16.91111 -16.60030 -16.31720 -16.01222 -15.83625 -15.61049 -15.21152 -14.94910 -14.78435 -14.72809 -14.44421 -14.19950 -13.75898 -13.65140 -13.30270 -13.23207 -13.12662 -13.05958 -12.90923 -12.76979 -12.61184 -12.58750 -12.33241 -12.03567 -11.75699 -11.60259 -11.54814 -11.17539 -11.15696 -10.85172 -10.78348 -10.61736 -10.31116 -9.53641 -9.03662 -8.67910 -8.36493 -6.14500 1.23115 1.39660 1.42025 1.54234 1.66697 1.73008 2.12234 2.26029 2.44211 2.96729 2.99006 3.24789 3.49666 3.63498 3.84568 3.94153 3.97516 4.02951 4.07870 4.15238 4.18483 4.23735 4.27333 4.38746 4.43634 4.47520 4.57948 4.63273 4.67271 4.76935 4.84536 4.95339 4.99062 5.03570 5.08817 5.19183 5.23322 5.28553 5.37746 5.44247 5.62469 5.90937 6.06010 6.17255 6.24947 6.57120 6.62967 7.03630 7.29540 7.44335 8.73369 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011712 B = 0.003851 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2390.118120 B = 7269.711289 C = 8237.999094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.076 3.924 3 H 0.100 0.900 4 C 0.509 3.491 5 N -0.839 5.839 6 O -0.573 6.573 7 N -0.554 5.554 8 C 0.077 3.923 9 C -0.127 4.127 10 C 0.120 3.880 11 H 0.080 0.920 12 C -0.116 4.116 13 C -0.109 4.109 14 C 0.124 3.876 15 H 0.050 0.950 16 C 0.060 3.940 17 N -0.586 5.586 18 C 0.566 3.434 19 O -0.571 6.571 20 C -0.111 4.111 21 S -0.144 6.144 22 C -0.548 4.548 23 H 0.075 0.925 24 C 0.015 3.985 25 N -0.911 5.911 26 Si 1.000 3.000 27 H -0.262 1.262 28 H -0.273 1.273 29 H -0.263 1.263 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.024 0.976 33 H 0.417 0.583 34 H 0.405 0.595 35 H 0.081 0.919 36 H 0.057 0.943 37 H 0.094 0.906 38 H 0.028 0.972 39 H 0.087 0.913 40 H 0.107 0.893 41 H 0.113 0.887 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.067 0.933 45 H 0.083 0.917 46 H 0.096 0.904 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.580 28.859 -0.220 31.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.036 4.036 3 H 0.117 0.883 4 C 0.293 3.707 5 N -0.404 5.404 6 O -0.450 6.450 7 N -0.280 5.280 8 C -0.050 4.050 9 C -0.166 4.166 10 C 0.017 3.983 11 H 0.098 0.902 12 C -0.154 4.154 13 C -0.147 4.147 14 C 0.020 3.980 15 H 0.068 0.932 16 C -0.067 4.067 17 N -0.318 5.318 18 C 0.355 3.645 19 O -0.450 6.450 20 C -0.263 4.263 21 S 0.083 5.917 22 C -0.696 4.696 23 H 0.093 0.907 24 C -0.190 4.190 25 N -0.547 5.547 26 Si 0.821 3.179 27 H -0.187 1.187 28 H -0.198 1.198 29 H -0.187 1.187 30 H 0.104 0.896 31 H 0.107 0.893 32 H 0.043 0.957 33 H 0.249 0.751 34 H 0.236 0.764 35 H 0.099 0.901 36 H 0.075 0.925 37 H 0.113 0.887 38 H 0.047 0.953 39 H 0.106 0.894 40 H 0.126 0.874 41 H 0.131 0.869 42 H 0.103 0.897 43 H 0.104 0.896 44 H 0.086 0.914 45 H 0.101 0.899 46 H 0.114 0.886 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.586 27.682 0.084 30.009 hybrid contribution 1.367 -0.785 -1.109 1.928 sum 12.954 26.897 -1.025 29.871 Atomic orbital electron populations 1.21854 0.92268 1.01536 1.04283 1.21597 0.96999 0.96647 0.88337 0.88255 1.21022 0.76519 0.87030 0.86161 1.43723 1.69736 1.14978 1.12002 1.90824 1.50822 1.17933 1.85460 1.61161 1.06920 1.58751 1.01218 1.21779 0.85811 0.96664 1.00751 1.21921 1.00690 0.98169 0.95809 1.22126 0.79083 1.00547 0.96592 0.90200 1.22546 0.97814 0.95432 0.99581 1.21976 0.92052 1.01100 0.99535 1.21104 0.99676 0.82076 0.95126 0.93168 1.22833 0.98899 0.97208 0.87751 1.48383 1.07231 1.09671 1.66532 1.19202 0.85322 0.84162 0.75849 1.90630 1.16441 1.83761 1.54177 1.23196 1.03077 0.96144 1.03838 1.85390 1.11073 1.06345 1.88878 1.23167 0.95165 0.97676 1.53597 0.90669 1.26146 0.96238 1.02162 0.94450 1.70191 1.08851 1.28947 1.46748 0.84939 0.77964 0.76391 0.78573 1.18705 1.19826 1.18668 0.89631 0.89299 0.95678 0.75113 0.76442 0.90126 0.92468 0.88736 0.95314 0.89399 0.87437 0.86861 0.89712 0.89616 0.91416 0.89871 0.88565 0.91886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 8.60 71.98 0.62 -2.34 16 2 C 0.08 1.49 2.43 44.17 0.11 1.59 16 3 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 4 C 0.51 12.53 5.96 87.66 0.52 13.05 16 5 N -0.84 -11.58 8.87 -173.54 -1.54 -13.12 16 6 O -0.57 -22.06 17.15 -3.04 -0.05 -22.12 16 7 N -0.55 -13.30 3.40 -873.09 -2.97 -16.27 16 8 C 0.08 1.48 4.64 86.47 0.40 1.89 16 9 C -0.13 -3.01 5.12 30.33 0.16 -2.86 16 10 C 0.12 2.80 3.49 44.73 0.16 2.96 16 11 H 0.08 2.00 7.71 -2.38 -0.02 1.98 16 12 C -0.12 -1.48 5.89 31.37 0.18 -1.29 16 13 C -0.11 -1.37 6.06 30.46 0.18 -1.19 16 14 C 0.12 2.88 2.50 43.93 0.11 2.99 16 15 H 0.05 1.39 7.97 -2.38 -0.02 1.37 16 16 C 0.06 1.24 4.83 85.39 0.41 1.65 16 17 N -0.59 -18.67 2.16 -771.12 -1.67 -20.34 16 18 C 0.57 25.51 7.93 87.66 0.69 26.21 16 19 O -0.57 -30.31 16.20 -3.04 -0.05 -30.36 16 20 C -0.11 -5.46 5.31 71.23 0.38 -5.09 16 21 S -0.14 -8.99 20.57 -56.49 -1.16 -10.15 16 22 C -0.55 -34.54 9.50 67.96 0.65 -33.90 16 23 H 0.08 4.49 7.80 -2.91 -0.02 4.47 16 24 C 0.01 0.90 5.49 84.86 0.47 1.36 16 25 N -0.91 -59.36 13.22 21.65 0.29 -59.07 16 26 Si 1.00 46.83 29.55 68.60 2.03 48.86 16 27 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 28 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 29 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 30 H 0.08 1.51 6.19 -2.39 -0.01 1.50 16 31 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.42 2.22 8.83 -92.71 -0.82 1.40 16 34 H 0.40 5.44 8.93 -92.71 -0.83 4.61 16 35 H 0.08 0.96 5.49 -2.39 -0.01 0.95 16 36 H 0.06 1.09 6.69 -2.39 -0.02 1.08 16 37 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.03 1.00 7.70 -2.38 -0.02 0.98 16 39 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.11 0.83 6.55 -2.38 -0.02 0.82 16 41 H 0.11 0.70 7.58 -2.39 -0.02 0.68 16 42 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.09 1.00 7.63 -2.39 -0.02 0.98 16 44 H 0.07 1.70 5.94 -2.39 -0.01 1.69 16 45 H 0.08 4.15 7.70 -2.40 -0.02 4.13 16 46 H 0.10 4.33 8.01 -2.40 -0.02 4.31 16 47 H 0.27 16.32 8.31 -92.71 -0.77 15.55 16 Total: -1.00 -97.13 378.09 -0.72 -97.86 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: -0.64 Total: 19.66 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: 5.04 Total: 5.04 kcal Atomic # 7 Polarization: -102.91 SS G_CDS: -5.89 Total: -108.80 kcal Atomic # 8 Polarization: -52.37 SS G_CDS: -0.10 Total: -52.47 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 2.03 Total: 48.86 kcal Atomic # 16 Polarization: -8.99 SS G_CDS: -1.16 Total: -10.15 kcal Total: -97.13 -0.72 -97.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723625382.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.160 kcal (2) G-P(sol) polarization free energy of solvation -97.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds