Wall clock time and date at job start Wed Apr 1 2020 01:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46498 * 109.47059 * 2 1 4 4 C 1.34777 * 119.99828 * 179.72339 * 3 2 1 5 5 O 1.21283 * 120.00222 * 0.28168 * 4 3 2 6 6 C 1.50703 * 120.00290 * 180.27728 * 4 3 2 7 7 N 1.46896 * 109.47254 * 180.02562 * 6 4 3 8 8 C 1.48567 * 110.99726 * 170.00412 * 7 6 4 9 9 C 1.54382 * 104.59221 * 200.96012 * 8 7 6 10 10 H 1.08995 * 117.60263 * 244.71891 * 9 8 7 11 11 C 1.52998 * 118.13113 * 89.18865 * 9 8 7 12 12 H 1.09001 * 117.44470 * 15.98542 * 11 9 8 13 13 C 1.53001 * 117.44406 * 160.68158 * 11 9 8 14 14 N 1.46498 * 109.47113 * 185.00186 * 13 11 9 15 15 C 1.34783 * 119.99856 * 180.02562 * 14 13 11 16 16 O 1.21281 * 119.99742 * 0.02562 * 15 14 13 17 17 C 1.50694 * 119.99680 * 180.02562 * 15 14 13 18 18 S 1.81008 * 109.46876 * 180.02562 * 17 15 14 19 19 C 1.76203 * 99.99837 * 180.02562 * 18 17 15 20 20 H 1.07994 * 120.00252 * 359.97438 * 19 18 17 21 21 C 1.38798 * 119.99525 * 180.02562 * 19 18 17 22 22 N 1.31627 * 120.00345 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99931 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47035 * 59.99183 * 23 21 19 25 25 H 1.48496 * 109.47339 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.46951 * 299.99653 * 23 21 19 27 27 C 1.54264 * 105.05871 * 23.84742 * 9 8 7 28 28 H 1.09003 * 121.78538 * 222.12750 * 27 9 8 29 29 C 1.48552 * 111.00315 * 54.58153 * 7 6 4 30 30 H 1.09003 * 109.47345 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47066 * 299.99732 * 1 2 3 32 32 H 1.09000 * 109.47665 * 59.99541 * 1 2 3 33 33 H 1.09004 * 109.47066 * 240.00268 * 2 1 3 34 34 H 1.08994 * 109.46974 * 120.00415 * 2 1 3 35 35 H 0.97001 * 120.00384 * 0.02562 * 3 2 1 36 36 H 1.08998 * 109.46954 * 300.00581 * 6 4 3 37 37 H 1.09002 * 109.46946 * 59.99717 * 6 4 3 38 38 H 1.09001 * 110.40813 * 319.73115 * 8 7 6 39 39 H 1.08998 * 110.41527 * 82.18002 * 8 7 6 40 40 H 1.09001 * 109.47327 * 305.01134 * 13 11 9 41 41 H 1.09000 * 109.46591 * 65.00832 * 13 11 9 42 42 H 0.96995 * 120.00277 * 0.02562 * 14 13 11 43 43 H 1.08995 * 109.47262 * 299.99666 * 17 15 14 44 44 H 1.09000 * 109.47140 * 60.00694 * 17 15 14 45 45 H 0.96999 * 120.00407 * 179.97438 * 22 21 19 46 46 H 1.09004 * 110.41125 * 277.81849 * 29 7 6 47 47 H 1.09004 * 110.41393 * 40.25852 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3433 1.6275 0.0056 5 8 4.1315 0.7056 0.0055 6 6 3.8458 3.0483 0.0120 7 7 5.3147 3.0482 0.0167 8 6 5.8479 4.4149 -0.2178 9 6 7.2914 4.1890 -0.7164 10 1 8.1051 4.5516 -0.0885 11 6 7.5170 4.0204 -2.2203 12 1 6.7111 4.3278 -2.8868 13 6 8.9337 4.2495 -2.7508 14 7 8.9277 4.1613 -4.2131 15 6 10.0731 4.3304 -4.9031 16 8 11.1088 4.5551 -4.3133 17 6 10.0668 4.2403 -6.4074 18 16 11.7431 4.5096 -7.0349 19 6 11.4505 4.3545 -8.7655 20 1 10.4541 4.1508 -9.1286 21 6 12.5010 4.4932 -9.6620 22 7 13.7156 4.7411 -9.2195 23 14 12.1908 4.3296 -11.4969 24 1 11.2129 5.3608 -11.9275 25 1 13.4662 4.5191 -12.2334 26 1 11.6464 2.9790 -11.7883 27 6 7.2932 2.7636 -1.3062 28 1 8.1152 2.0699 -1.1289 29 6 5.8508 2.2482 -1.1144 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.3880 2.1185 0.0004 36 1 3.4856 3.5649 -0.8777 37 1 3.4791 3.5593 0.9022 38 1 5.2588 4.9274 -0.9784 39 1 5.8514 4.9862 0.7105 40 1 9.2799 5.2376 -2.4477 41 1 9.6012 3.4900 -2.3438 42 1 8.0995 3.9812 -4.6848 43 1 9.7201 3.2525 -6.7107 44 1 9.3998 5.0004 -6.8141 45 1 14.4498 4.8376 -9.8460 46 1 5.8564 1.1880 -0.8611 47 1 5.2622 2.4215 -2.0153 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725300969.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:11:41 Heat of formation + Delta-G solvation = -31.097757 kcal Electronic energy + Delta-G solvation = -25867.221682 eV Core-core repulsion = 21984.404789 eV Total energy + Delta-G solvation = -3882.816893 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.80691 -39.63931 -38.89727 -35.99001 -35.31550 -33.66776 -32.41279 -31.41865 -29.91843 -28.74189 -28.32629 -25.98369 -25.37590 -23.52340 -22.19902 -21.03036 -21.00744 -20.56405 -20.05337 -17.85239 -17.37277 -16.80349 -16.56887 -16.30838 -16.14654 -15.59163 -15.38816 -15.10591 -14.78945 -14.70618 -14.44300 -13.96313 -13.85901 -13.67987 -13.28798 -13.16220 -13.02905 -12.89392 -12.55376 -12.53061 -12.42196 -12.25272 -11.93225 -11.79603 -11.54748 -11.48948 -11.02988 -11.02685 -10.76610 -10.52006 -10.11034 -9.99204 -9.80866 -9.60275 -9.37474 -9.04768 -8.87820 -8.81831 -8.22025 -6.48117 -6.19835 -3.90438 2.16929 2.52478 2.98316 3.11706 3.20301 3.24622 3.28875 3.32574 3.53840 3.76910 4.11509 4.16024 4.22141 4.38302 4.48257 4.50553 4.60489 4.69345 4.73292 4.76272 4.83950 4.93808 4.96065 5.13304 5.15116 5.18897 5.22575 5.24265 5.32933 5.42613 5.45442 5.61915 5.63582 5.74381 5.80680 5.88783 5.91981 6.00685 6.04922 6.16088 6.33387 6.41572 6.64270 6.96412 7.60779 7.73355 7.76287 8.36618 8.63760 9.25209 10.87547 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017859 B = 0.001571 C = 0.001472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.460471 B =17824.414895 C =19012.314496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.114 3.886 3 N -0.735 5.735 4 C 0.512 3.488 5 O -0.520 6.520 6 C 0.024 3.976 7 N -0.494 5.494 8 C 0.060 3.940 9 C -0.150 4.150 10 H 0.121 0.879 11 C -0.134 4.134 12 H 0.107 0.893 13 C 0.154 3.846 14 N -0.737 5.737 15 C 0.532 3.468 16 O -0.518 6.518 17 C -0.153 4.153 18 S -0.060 6.060 19 C -0.537 4.537 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C -0.156 4.156 28 H 0.123 0.877 29 C 0.059 3.941 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.400 0.600 36 H 0.066 0.934 37 H 0.107 0.893 38 H 0.048 0.952 39 H 0.090 0.910 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.398 0.602 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.269 0.731 46 H 0.114 0.886 47 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.553 -3.930 20.997 36.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.009 4.009 3 N -0.389 5.389 4 C 0.297 3.703 5 O -0.395 6.395 6 C -0.107 4.107 7 N -0.218 5.218 8 C -0.067 4.067 9 C -0.169 4.169 10 H 0.139 0.861 11 C -0.152 4.152 12 H 0.125 0.875 13 C 0.030 3.970 14 N -0.391 5.391 15 C 0.318 3.682 16 O -0.392 6.392 17 C -0.304 4.304 18 S 0.167 5.833 19 C -0.685 4.685 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.200 1.200 25 H -0.208 1.208 26 H -0.200 1.200 27 C -0.175 4.175 28 H 0.141 0.859 29 C -0.068 4.068 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.234 0.766 36 H 0.084 0.916 37 H 0.125 0.875 38 H 0.066 0.934 39 H 0.108 0.892 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.232 0.768 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.079 0.921 46 H 0.132 0.868 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -26.898 -4.437 22.488 35.340 hybrid contribution -2.536 0.284 -2.789 3.780 sum -29.434 -4.153 19.699 35.661 Atomic orbital electron populations 1.22009 0.94325 1.03427 1.02534 1.21302 0.94277 0.82769 1.02579 1.46046 1.07061 1.09127 1.76650 1.20533 0.82161 0.91491 0.76075 1.90691 1.54660 1.46296 1.47823 1.22215 0.90864 0.94225 1.03445 1.65527 1.04660 1.08662 1.42999 1.22712 0.93209 0.90209 1.00602 1.23404 0.97918 1.00904 0.94716 0.86087 1.23305 0.98152 1.01068 0.92718 0.87505 1.20710 0.93524 1.02232 0.80544 1.45964 1.11198 1.75474 1.06503 1.20303 0.82929 0.75554 0.89449 1.90705 1.31290 1.46429 1.70801 1.23527 1.08345 1.04998 0.93506 1.85399 1.00578 1.93422 1.03927 1.22834 0.97516 1.56792 0.91347 0.90985 1.24984 0.94422 0.94545 0.99574 1.70006 0.99660 1.45288 1.35333 0.86227 0.77712 0.78789 0.82784 1.19966 1.20800 1.19951 1.24353 0.98495 0.90270 1.04381 0.85870 1.22871 0.92001 1.00925 0.90957 0.90653 0.91935 0.91932 0.91419 0.91391 0.76605 0.91624 0.87474 0.93376 0.89177 0.90934 0.91170 0.76809 0.89205 0.89244 0.92129 0.86795 0.94239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.37 10.03 37.16 0.37 0.01 16 2 C 0.11 0.55 6.39 -4.04 -0.03 0.53 16 3 N -0.73 -3.51 5.56 -60.30 -0.33 -3.85 16 4 C 0.51 3.99 7.54 -10.98 -0.08 3.91 16 5 O -0.52 -6.23 13.67 5.55 0.08 -6.16 16 6 C 0.02 0.14 5.55 -4.98 -0.03 0.11 16 7 N -0.49 -4.21 5.33 -231.41 -1.23 -5.44 16 8 C 0.06 0.43 6.29 -2.18 -0.01 0.41 16 9 C -0.15 -1.26 6.70 -89.23 -0.60 -1.86 16 10 H 0.12 0.98 8.14 -51.93 -0.42 0.56 16 11 C -0.13 -1.21 5.60 -88.45 -0.50 -1.70 16 12 H 0.11 0.88 8.04 -51.93 -0.42 0.46 16 13 C 0.15 1.84 5.96 -4.04 -0.02 1.81 16 14 N -0.74 -10.04 5.56 -60.29 -0.33 -10.37 16 15 C 0.53 10.10 7.85 -10.99 -0.09 10.02 16 16 O -0.52 -11.99 15.86 5.56 0.09 -11.90 16 17 C -0.15 -3.13 6.16 36.00 0.22 -2.91 16 18 S -0.06 -1.64 20.57 -107.50 -2.21 -3.86 16 19 C -0.54 -15.42 9.50 30.94 0.29 -15.13 16 20 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 21 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 22 N -0.87 -26.34 13.22 55.49 0.73 -25.61 16 23 Si 0.92 21.52 29.55 -169.99 -5.02 16.49 16 24 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 27 C -0.16 -1.48 6.90 -87.07 -0.60 -2.08 16 28 H 0.12 1.23 8.14 -51.93 -0.42 0.81 16 29 C 0.06 0.57 5.14 -2.19 -0.01 0.56 16 30 H 0.07 0.14 8.14 -51.93 -0.42 -0.28 16 31 H 0.06 0.11 8.14 -51.93 -0.42 -0.32 16 32 H 0.06 0.12 8.14 -51.93 -0.42 -0.31 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.40 0.72 8.47 -40.82 -0.35 0.38 16 36 H 0.07 0.28 7.88 -51.93 -0.41 -0.13 16 37 H 0.11 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.05 0.30 7.81 -51.93 -0.41 -0.10 16 39 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.07 0.91 7.95 -51.93 -0.41 0.50 16 42 H 0.40 4.26 8.40 -40.82 -0.34 3.91 16 43 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 44 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 45 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 46 H 0.11 1.35 6.05 -51.93 -0.31 1.04 16 47 H 0.04 0.37 8.00 -51.93 -0.42 -0.05 16 LS Contribution 402.17 15.07 6.06 6.06 Total: -1.00 -37.34 402.17 -11.04 -48.38 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -7.68 Total: 0.55 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: -1.17 Total: -4.29 kcal Atomic # 7 Polarization: -44.11 SS G_CDS: -1.17 Total: -45.28 kcal Atomic # 8 Polarization: -18.22 SS G_CDS: 0.16 Total: -18.06 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -37.34 -11.04 -48.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725300969.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.278 kcal (2) G-P(sol) polarization free energy of solvation -37.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds