Wall clock time and date at job start Wed Apr 1 2020 01:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46498 * 109.47059 * 2 1 4 4 C 1.34777 * 119.99828 * 179.72339 * 3 2 1 5 5 O 1.21283 * 120.00222 * 0.28168 * 4 3 2 6 6 C 1.50703 * 120.00290 * 180.27728 * 4 3 2 7 7 N 1.46896 * 109.47254 * 180.02562 * 6 4 3 8 8 C 1.48567 * 110.99726 * 170.00412 * 7 6 4 9 9 C 1.54382 * 104.59221 * 200.96012 * 8 7 6 10 10 H 1.08995 * 117.60263 * 244.71891 * 9 8 7 11 11 C 1.52998 * 118.13113 * 89.18865 * 9 8 7 12 12 H 1.09001 * 117.44470 * 15.98542 * 11 9 8 13 13 C 1.53001 * 117.44406 * 160.68158 * 11 9 8 14 14 N 1.46498 * 109.47113 * 185.00186 * 13 11 9 15 15 C 1.34783 * 119.99856 * 180.02562 * 14 13 11 16 16 O 1.21281 * 119.99742 * 0.02562 * 15 14 13 17 17 C 1.50694 * 119.99680 * 180.02562 * 15 14 13 18 18 S 1.81008 * 109.46876 * 180.02562 * 17 15 14 19 19 C 1.76203 * 99.99837 * 180.02562 * 18 17 15 20 20 H 1.07994 * 120.00252 * 359.97438 * 19 18 17 21 21 C 1.38798 * 119.99525 * 180.02562 * 19 18 17 22 22 N 1.31627 * 120.00345 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99931 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47035 * 59.99183 * 23 21 19 25 25 H 1.48496 * 109.47339 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.46951 * 299.99653 * 23 21 19 27 27 C 1.54264 * 105.05871 * 23.84742 * 9 8 7 28 28 H 1.09003 * 121.78538 * 222.12750 * 27 9 8 29 29 C 1.48552 * 111.00315 * 54.58153 * 7 6 4 30 30 H 1.09003 * 109.47345 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47066 * 299.99732 * 1 2 3 32 32 H 1.09000 * 109.47665 * 59.99541 * 1 2 3 33 33 H 1.09004 * 109.47066 * 240.00268 * 2 1 3 34 34 H 1.08994 * 109.46974 * 120.00415 * 2 1 3 35 35 H 0.97001 * 120.00384 * 0.02562 * 3 2 1 36 36 H 1.08998 * 109.46954 * 300.00581 * 6 4 3 37 37 H 1.09002 * 109.46946 * 59.99717 * 6 4 3 38 38 H 1.09001 * 110.40813 * 319.73115 * 8 7 6 39 39 H 1.08998 * 110.41527 * 82.18002 * 8 7 6 40 40 H 1.09001 * 109.47327 * 305.01134 * 13 11 9 41 41 H 1.09000 * 109.46591 * 65.00832 * 13 11 9 42 42 H 0.96995 * 120.00277 * 0.02562 * 14 13 11 43 43 H 1.08995 * 109.47262 * 299.99666 * 17 15 14 44 44 H 1.09000 * 109.47140 * 60.00694 * 17 15 14 45 45 H 0.96999 * 120.00407 * 179.97438 * 22 21 19 46 46 H 1.09004 * 110.41125 * 277.81849 * 29 7 6 47 47 H 1.09004 * 110.41393 * 40.25852 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3433 1.6275 0.0056 5 8 4.1315 0.7056 0.0055 6 6 3.8458 3.0483 0.0120 7 7 5.3147 3.0482 0.0167 8 6 5.8479 4.4149 -0.2178 9 6 7.2914 4.1890 -0.7164 10 1 8.1051 4.5516 -0.0885 11 6 7.5170 4.0204 -2.2203 12 1 6.7111 4.3278 -2.8868 13 6 8.9337 4.2495 -2.7508 14 7 8.9277 4.1613 -4.2131 15 6 10.0731 4.3304 -4.9031 16 8 11.1088 4.5551 -4.3133 17 6 10.0668 4.2403 -6.4074 18 16 11.7431 4.5096 -7.0349 19 6 11.4505 4.3545 -8.7655 20 1 10.4541 4.1508 -9.1286 21 6 12.5010 4.4932 -9.6620 22 7 13.7156 4.7411 -9.2195 23 14 12.1908 4.3296 -11.4969 24 1 11.2129 5.3608 -11.9275 25 1 13.4662 4.5191 -12.2334 26 1 11.6464 2.9790 -11.7883 27 6 7.2932 2.7636 -1.3062 28 1 8.1152 2.0699 -1.1289 29 6 5.8508 2.2482 -1.1144 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.3880 2.1185 0.0004 36 1 3.4856 3.5649 -0.8777 37 1 3.4791 3.5593 0.9022 38 1 5.2588 4.9274 -0.9784 39 1 5.8514 4.9862 0.7105 40 1 9.2799 5.2376 -2.4477 41 1 9.6012 3.4900 -2.3438 42 1 8.0995 3.9812 -4.6848 43 1 9.7201 3.2525 -6.7107 44 1 9.3998 5.0004 -6.8141 45 1 14.4498 4.8376 -9.8460 46 1 5.8564 1.1880 -0.8611 47 1 5.2622 2.4215 -2.0153 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725300969.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:11:40 Heat of formation + Delta-G solvation = -60.594681 kcal Electronic energy + Delta-G solvation = -25868.500765 eV Core-core repulsion = 21984.404789 eV Total energy + Delta-G solvation = -3884.095976 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.45056 -40.64698 -39.99074 -36.64568 -36.13150 -34.71537 -34.57445 -31.92083 -31.25059 -29.37533 -29.14007 -27.70114 -26.74055 -23.98987 -22.81225 -22.05519 -21.58417 -21.37910 -21.07517 -19.80764 -17.98691 -17.79549 -17.56267 -17.16254 -16.89940 -16.87264 -16.62811 -16.46818 -15.92424 -15.67301 -15.25964 -15.05431 -14.86344 -14.70215 -14.45990 -14.33578 -13.99664 -13.66927 -13.44542 -13.32405 -13.16767 -13.08840 -12.86054 -12.75165 -12.69182 -12.62660 -12.36288 -12.24890 -12.21488 -11.74617 -11.30896 -11.12544 -10.90909 -10.84803 -10.65459 -10.27864 -10.11032 -10.07301 -9.43401 -8.66668 -8.33984 -6.12514 1.26611 1.44371 1.46800 1.56563 1.60173 1.61492 2.06473 2.21803 2.28363 2.50474 3.00039 3.01611 3.31958 3.37511 3.61484 3.80952 3.88678 4.03428 4.11299 4.14147 4.18080 4.20039 4.25118 4.30068 4.31294 4.41394 4.49866 4.50668 4.51040 4.54162 4.67623 4.74957 4.92558 4.98384 5.04530 5.08384 5.19716 5.23848 5.25436 5.41869 5.43722 5.51209 5.72644 5.89070 6.20021 6.49317 6.57191 7.07011 7.23040 7.28078 8.75041 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017859 B = 0.001571 C = 0.001472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.460471 B =17824.414895 C =19012.314496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.112 3.888 3 N -0.720 5.720 4 C 0.504 3.496 5 O -0.571 6.571 6 C 0.026 3.974 7 N -0.513 5.513 8 C 0.064 3.936 9 C -0.142 4.142 10 H 0.122 0.878 11 C -0.121 4.121 12 H 0.126 0.874 13 C 0.155 3.845 14 N -0.710 5.710 15 C 0.533 3.467 16 O -0.567 6.567 17 C -0.129 4.129 18 S -0.152 6.152 19 C -0.548 4.548 20 H 0.083 0.917 21 C 0.014 3.986 22 N -0.911 5.911 23 Si 0.999 3.001 24 H -0.261 1.261 25 H -0.279 1.279 26 H -0.263 1.263 27 C -0.170 4.170 28 H 0.109 0.891 29 C 0.069 3.931 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.051 0.949 34 H 0.053 0.947 35 H 0.417 0.583 36 H 0.090 0.910 37 H 0.133 0.867 38 H 0.065 0.935 39 H 0.104 0.896 40 H 0.069 0.931 41 H 0.056 0.944 42 H 0.417 0.583 43 H 0.109 0.891 44 H 0.112 0.888 45 H 0.271 0.729 46 H 0.085 0.915 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.179 -2.992 20.515 39.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.012 4.012 3 N -0.374 5.374 4 C 0.291 3.709 5 O -0.450 6.450 6 C -0.105 4.105 7 N -0.238 5.238 8 C -0.062 4.062 9 C -0.162 4.162 10 H 0.140 0.860 11 C -0.140 4.140 12 H 0.144 0.856 13 C 0.031 3.969 14 N -0.364 5.364 15 C 0.319 3.681 16 O -0.445 6.445 17 C -0.280 4.280 18 S 0.075 5.925 19 C -0.696 4.696 20 H 0.102 0.898 21 C -0.191 4.191 22 N -0.548 5.548 23 Si 0.820 3.180 24 H -0.186 1.186 25 H -0.204 1.204 26 H -0.187 1.187 27 C -0.189 4.189 28 H 0.128 0.872 29 C -0.058 4.058 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.254 0.746 36 H 0.108 0.892 37 H 0.150 0.850 38 H 0.083 0.917 39 H 0.122 0.878 40 H 0.087 0.913 41 H 0.075 0.925 42 H 0.254 0.746 43 H 0.127 0.873 44 H 0.130 0.870 45 H 0.080 0.920 46 H 0.103 0.897 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -30.634 -3.485 22.026 37.891 hybrid contribution -1.516 -0.045 -2.497 2.922 sum -32.151 -3.530 19.529 37.782 Atomic orbital electron populations 1.21949 0.91917 1.04060 1.03396 1.21313 0.96148 0.82623 1.01125 1.45970 1.06601 1.09764 1.75091 1.21019 0.82606 0.91954 0.75288 1.90684 1.56048 1.47860 1.50382 1.22318 0.89319 0.93107 1.05709 1.65462 1.06475 1.09271 1.42630 1.22757 0.92045 0.89651 1.01776 1.23534 0.99214 0.99423 0.93985 0.85989 1.23123 0.96537 1.00798 0.93537 0.85625 1.20767 0.95435 1.01654 0.79055 1.45703 1.10308 1.73104 1.07291 1.20080 0.83584 0.75503 0.88942 1.90694 1.33345 1.49116 1.71366 1.23367 1.03438 1.06733 0.94483 1.85590 1.07644 1.93952 1.05343 1.23185 0.98220 1.56793 0.91419 0.89848 1.26130 0.93949 0.93750 1.05254 1.70177 1.00848 1.46450 1.37296 0.85000 0.77907 0.79419 0.75636 1.18578 1.20383 1.18724 1.24295 0.98305 0.90791 1.05530 0.87249 1.22633 0.92026 0.99665 0.91502 0.90205 0.90928 0.91094 0.93008 0.92879 0.74588 0.89221 0.84960 0.91659 0.87770 0.91266 0.92516 0.74615 0.87266 0.86977 0.91984 0.89668 0.93856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.43 10.03 71.98 0.72 0.29 16 2 C 0.11 1.03 6.39 86.38 0.55 1.58 16 3 N -0.72 -5.85 5.56 -463.07 -2.57 -8.42 16 4 C 0.50 7.39 7.54 87.66 0.66 8.05 16 5 O -0.57 -14.11 13.67 -3.04 -0.04 -14.16 16 6 C 0.03 0.24 5.55 85.56 0.47 0.71 16 7 N -0.51 -7.81 5.33 -886.05 -4.73 -12.54 16 8 C 0.06 0.72 6.29 86.45 0.54 1.26 16 9 C -0.14 -2.11 6.70 -9.90 -0.07 -2.18 16 10 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 11 C -0.12 -1.94 5.60 -9.39 -0.05 -1.99 16 12 H 0.13 1.60 8.04 -2.39 -0.02 1.58 16 13 C 0.15 3.52 5.96 86.38 0.51 4.04 16 14 N -0.71 -18.12 5.56 -463.06 -2.57 -20.69 16 15 C 0.53 19.96 7.85 87.65 0.69 20.65 16 16 O -0.57 -26.79 15.86 -3.03 -0.05 -26.83 16 17 C -0.13 -5.15 6.16 71.23 0.44 -4.71 16 18 S -0.15 -8.56 20.57 -56.49 -1.16 -9.72 16 19 C -0.55 -31.52 9.50 67.95 0.65 -30.88 16 20 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 21 C 0.01 0.80 5.49 84.86 0.47 1.27 16 22 N -0.91 -56.39 13.22 21.65 0.29 -56.10 16 23 Si 1.00 43.71 29.55 68.60 2.03 45.73 16 24 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 25 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 26 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 27 C -0.17 -3.13 6.90 -8.49 -0.06 -3.19 16 28 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 29 C 0.07 1.29 5.14 86.45 0.44 1.73 16 30 H 0.08 0.18 8.14 -2.39 -0.02 0.16 16 31 H 0.07 0.08 8.14 -2.38 -0.02 0.06 16 32 H 0.07 0.10 8.14 -2.39 -0.02 0.09 16 33 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 34 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.42 0.43 8.47 -92.71 -0.79 -0.36 16 36 H 0.09 0.42 7.88 -2.39 -0.02 0.40 16 37 H 0.13 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.07 0.53 7.81 -2.39 -0.02 0.51 16 39 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.06 1.49 7.95 -2.39 -0.02 1.47 16 42 H 0.42 7.67 8.40 -92.71 -0.78 6.89 16 43 H 0.11 3.94 8.14 -2.40 -0.02 3.92 16 44 H 0.11 3.97 8.14 -2.39 -0.02 3.95 16 45 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 46 H 0.09 2.12 6.05 -2.38 -0.01 2.11 16 47 H 0.04 0.74 8.00 -2.38 -0.02 0.72 16 Total: -1.00 -85.06 402.17 -3.42 -88.47 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: -0.58 Total: 17.61 kcal Atomic # 6 Polarization: -9.33 SS G_CDS: 5.97 Total: -3.35 kcal Atomic # 7 Polarization: -88.17 SS G_CDS: -9.59 Total: -97.75 kcal Atomic # 8 Polarization: -40.90 SS G_CDS: -0.09 Total: -40.99 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 16 Polarization: -8.56 SS G_CDS: -1.16 Total: -9.72 kcal Total: -85.06 -3.42 -88.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725300969.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.879 kcal (2) G-P(sol) polarization free energy of solvation -85.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds