Wall clock time and date at job start Wed Apr 1 2020 00:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47178 * 2 1 4 4 N 1.46902 * 109.46921 * 120.00065 * 2 1 3 5 5 C 1.46909 * 110.99552 * 274.99888 * 4 2 1 6 6 H 1.08998 * 112.85059 * 23.79938 * 5 4 2 7 7 C 1.53778 * 113.61313 * 155.00104 * 5 4 2 8 8 C 1.53781 * 87.08280 * 139.97884 * 7 5 4 9 9 H 1.08994 * 113.61330 * 89.19634 * 8 7 5 10 10 N 1.46504 * 113.61469 * 220.02121 * 8 7 5 11 11 C 1.34775 * 119.99565 * 204.99539 * 10 8 7 12 12 O 1.21275 * 120.00279 * 0.02562 * 11 10 8 13 13 C 1.50703 * 119.99776 * 179.97438 * 11 10 8 14 14 S 1.81000 * 109.47042 * 180.02562 * 13 11 10 15 15 C 1.76199 * 99.99871 * 180.02562 * 14 13 11 16 16 H 1.08009 * 120.00150 * 359.72084 * 15 14 13 17 17 C 1.38795 * 120.00161 * 180.02562 * 15 14 13 18 18 N 1.31634 * 120.00398 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 119.99794 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.46867 * 90.00305 * 19 17 15 21 21 H 1.48501 * 109.47216 * 210.00162 * 19 17 15 22 22 H 1.48490 * 109.47426 * 330.00223 * 19 17 15 23 23 C 1.53781 * 113.61093 * 252.49494 * 5 4 2 24 24 C 1.50702 * 109.46962 * 239.99556 * 2 1 3 25 25 O 1.21281 * 119.99607 * 240.00242 * 24 2 1 26 26 N 1.34771 * 119.99849 * 60.00283 * 24 2 1 27 27 C 1.46505 * 119.99863 * 180.02562 * 26 24 2 28 28 C 1.53003 * 117.49471 * 223.62316 * 27 26 24 29 29 C 1.52996 * 117.50082 * 155.00137 * 27 26 24 30 30 H 1.09001 * 109.47059 * 60.00335 * 1 2 3 31 31 H 1.09000 * 109.47501 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47416 * 300.00488 * 1 2 3 33 33 H 1.00902 * 111.00428 * 38.94535 * 4 2 1 34 34 H 1.09011 * 113.61524 * 25.43020 * 7 5 4 35 35 H 1.08995 * 113.61418 * 254.52944 * 7 5 4 36 36 H 0.96993 * 120.00065 * 24.99771 * 10 8 7 37 37 H 1.09000 * 109.46904 * 60.00309 * 13 11 10 38 38 H 1.09005 * 109.47194 * 300.00350 * 13 11 10 39 39 H 0.96996 * 120.00460 * 179.97438 * 18 17 15 40 40 H 1.09000 * 113.61361 * 105.47305 * 23 5 4 41 41 H 1.09002 * 113.61614 * 334.57269 * 23 5 4 42 42 H 0.96997 * 120.00137 * 0.02562 * 26 24 2 43 43 H 1.09004 * 115.54764 * 9.32556 * 27 26 24 44 44 H 1.08997 * 117.50476 * 359.97438 * 28 27 26 45 45 H 1.09007 * 117.49462 * 145.01647 * 28 27 26 46 46 H 1.09004 * 117.50119 * 214.97422 * 29 27 26 47 47 H 1.09004 * 117.49684 * 359.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.0824 0.2227 2.3469 6 1 1.4067 1.0723 2.2481 7 6 1.9844 -0.4875 3.7074 8 6 3.0598 0.4914 4.2074 9 1 2.6523 1.4147 4.6191 10 7 4.0578 -0.1298 5.0817 11 6 4.7305 0.6211 5.9762 12 8 4.5094 1.8107 6.0577 13 6 5.7567 -0.0179 6.8761 14 16 6.4797 1.2416 7.9564 15 6 7.6107 0.2473 8.8713 16 1 7.6806 -0.8122 8.6735 17 6 8.4072 0.8245 9.8504 18 7 9.2525 0.0819 10.5336 19 14 8.2807 2.6556 10.1979 20 1 7.2544 2.8909 11.2449 21 1 9.5946 3.1618 10.6699 22 1 7.8928 3.3696 8.9551 23 6 3.5152 0.6156 2.7438 24 6 2.0323 -0.7105 -1.2304 25 8 2.7295 -1.6966 -1.1190 26 7 1.7067 -0.2501 -2.4545 27 6 2.1945 -0.9412 -3.6507 28 6 2.7316 -0.0790 -4.7949 29 6 1.3818 -0.7852 -4.9375 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.4494 -1.4979 1.4102 34 1 2.3162 -1.5256 3.6830 35 1 1.0185 -0.3622 4.1967 36 1 4.2344 -1.0813 5.0168 37 1 6.5411 -0.4700 6.2690 38 1 5.2790 -0.7866 7.4837 39 1 9.8095 0.4853 11.2176 40 1 3.7852 1.6314 2.4552 41 1 4.2655 -0.1208 2.4559 42 1 1.1494 0.5388 -2.5435 43 1 2.6782 -1.9019 -3.4741 44 1 2.7216 1.0023 -4.6579 45 1 3.5689 -0.4725 -5.3713 46 1 1.3311 -1.6432 -5.6079 47 1 0.4839 -0.1687 -4.8941 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731470365.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:55 Heat of formation + Delta-G solvation = -24.295880 kcal Electronic energy + Delta-G solvation = -26025.340799 eV Core-core repulsion = 22142.818858 eV Total energy + Delta-G solvation = -3882.521942 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.53861 -39.89764 -38.41372 -37.51866 -35.55892 -33.47045 -32.83947 -32.41184 -29.87470 -28.82454 -26.00491 -25.60741 -25.24681 -23.39652 -22.94156 -22.00228 -20.82192 -20.44298 -20.04444 -17.81906 -17.60015 -17.17280 -16.76755 -16.33807 -15.72625 -15.58318 -15.17741 -15.03974 -14.95043 -14.72591 -14.45250 -14.33627 -13.83876 -13.43056 -13.24682 -13.08081 -12.87826 -12.77661 -12.67503 -12.63835 -12.19445 -12.10502 -11.92282 -11.76568 -11.63550 -11.24018 -11.16483 -11.05341 -10.98799 -10.80167 -10.55738 -10.10197 -9.83096 -9.46537 -9.22908 -8.99415 -8.94332 -8.75372 -8.47362 -6.88966 -6.26492 -3.98023 2.22484 2.48732 2.80720 2.98603 3.32801 3.36041 3.37957 3.52423 3.63958 3.86420 4.14594 4.21278 4.23393 4.34582 4.35482 4.38190 4.43866 4.44890 4.55642 4.67738 4.75907 4.78672 4.96163 5.05792 5.06431 5.12566 5.20129 5.26407 5.37508 5.39165 5.43537 5.47904 5.51258 5.59502 5.77665 5.81711 5.87870 5.99651 6.04384 6.07614 6.57147 6.65944 6.89872 7.06196 7.67591 7.86483 7.96578 8.44345 8.53451 9.19721 10.82773 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.025178 B = 0.001578 C = 0.001544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.820617 B =17743.085767 C =18135.318166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.068 3.932 3 H 0.106 0.894 4 N -0.651 5.651 5 C 0.062 3.938 6 H 0.079 0.921 7 C -0.148 4.148 8 C 0.127 3.873 9 H 0.114 0.886 10 N -0.724 5.724 11 C 0.532 3.468 12 O -0.522 6.522 13 C -0.125 4.125 14 S -0.143 6.143 15 C -0.521 4.521 16 H 0.088 0.912 17 C 0.096 3.904 18 N -0.881 5.881 19 Si 0.857 3.143 20 H -0.267 1.267 21 H -0.274 1.274 22 H -0.235 1.235 23 C -0.138 4.138 24 C 0.522 3.478 25 O -0.513 6.513 26 N -0.708 5.708 27 C 0.081 3.919 28 C -0.194 4.194 29 C -0.191 4.191 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.350 0.650 34 H 0.095 0.905 35 H 0.074 0.926 36 H 0.401 0.599 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.270 0.730 40 H 0.068 0.932 41 H 0.095 0.905 42 H 0.399 0.601 43 H 0.138 0.862 44 H 0.097 0.903 45 H 0.102 0.898 46 H 0.103 0.897 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.262 -1.425 -29.713 37.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.046 4.046 3 H 0.124 0.876 4 N -0.283 5.283 5 C -0.049 4.049 6 H 0.097 0.903 7 C -0.187 4.187 8 C 0.021 3.979 9 H 0.132 0.868 10 N -0.377 5.377 11 C 0.318 3.682 12 O -0.396 6.396 13 C -0.276 4.276 14 S 0.084 5.916 15 C -0.669 4.669 16 H 0.106 0.894 17 C -0.113 4.113 18 N -0.517 5.517 19 Si 0.682 3.318 20 H -0.192 1.192 21 H -0.200 1.200 22 H -0.159 1.159 23 C -0.178 4.178 24 C 0.307 3.693 25 O -0.386 6.386 26 N -0.360 5.360 27 C -0.025 4.025 28 C -0.233 4.233 29 C -0.229 4.229 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.170 0.830 34 H 0.113 0.887 35 H 0.093 0.907 36 H 0.235 0.765 37 H 0.116 0.884 38 H 0.115 0.885 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.114 0.886 42 H 0.234 0.766 43 H 0.155 0.845 44 H 0.115 0.885 45 H 0.121 0.879 46 H 0.121 0.879 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -21.296 -0.123 -29.449 36.342 hybrid contribution -0.742 -0.637 0.226 1.004 sum -22.038 -0.760 -29.223 36.609 Atomic orbital electron populations 1.22494 0.94862 1.03243 1.03332 1.21513 0.93954 0.98906 0.90185 0.87589 1.60214 1.57308 1.08845 1.01904 1.22879 0.98222 0.95269 0.88488 0.90336 1.23623 0.99700 1.00178 0.95190 1.22200 0.89002 0.97430 0.89256 0.86805 1.45902 1.41195 1.12098 1.38471 1.20307 0.81137 0.87051 0.79671 1.90682 1.65160 1.15120 1.68678 1.23294 0.99783 1.03845 1.00641 1.84760 1.49463 1.13585 1.43824 1.22329 1.24234 0.97496 1.22823 0.89388 1.24710 0.93666 0.98615 0.94293 1.69940 1.22956 1.36149 1.22692 0.86732 0.78414 0.85337 0.81350 1.19237 1.19960 1.15928 1.23612 0.96729 1.02402 0.95083 1.20625 0.80014 0.84769 0.83901 1.90719 1.36011 1.25587 1.86253 1.45426 1.53917 1.31835 1.04818 1.21586 1.01949 0.98474 0.80461 1.23433 0.97653 0.99592 1.02602 1.23377 0.95536 1.03810 1.00168 0.91537 0.91604 0.91133 0.82989 0.88655 0.90689 0.76465 0.88412 0.88507 0.91967 0.91299 0.88643 0.76634 0.84474 0.88477 0.87922 0.87870 0.88535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.66 9.05 37.16 0.34 -0.32 16 2 C 0.07 0.42 2.85 -68.86 -0.20 0.22 16 3 H 0.11 0.57 7.84 -51.93 -0.41 0.16 16 4 N -0.65 -4.99 5.80 -100.10 -0.58 -5.57 16 5 C 0.06 0.45 3.84 -66.90 -0.26 0.19 16 6 H 0.08 0.48 7.49 -51.93 -0.39 0.09 16 7 C -0.15 -1.12 7.40 -25.92 -0.19 -1.31 16 8 C 0.13 1.38 4.24 -67.11 -0.28 1.09 16 9 H 0.11 1.41 7.46 -51.93 -0.39 1.02 16 10 N -0.72 -9.26 5.35 -53.02 -0.28 -9.54 16 11 C 0.53 9.50 7.85 -10.98 -0.09 9.41 16 12 O -0.52 -11.24 15.46 5.56 0.09 -11.15 16 13 C -0.12 -2.45 6.16 36.01 0.22 -2.23 16 14 S -0.14 -3.66 18.55 -107.50 -1.99 -5.65 16 15 C -0.52 -15.19 10.04 30.94 0.31 -14.88 16 16 H 0.09 2.67 8.03 -52.48 -0.42 2.25 16 17 C 0.10 2.82 5.50 -17.43 -0.10 2.73 16 18 N -0.88 -26.80 13.97 55.49 0.78 -26.02 16 19 Si 0.86 21.96 27.74 -169.99 -4.71 17.25 16 20 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.24 -6.03 6.74 56.52 0.38 -5.65 16 23 C -0.14 -1.39 7.68 -25.92 -0.20 -1.59 16 24 C 0.52 4.40 7.22 -10.99 -0.08 4.32 16 25 O -0.51 -6.67 16.00 5.56 0.09 -6.58 16 26 N -0.71 -4.02 5.46 -53.80 -0.29 -4.32 16 27 C 0.08 0.49 6.43 -67.93 -0.44 0.06 16 28 C -0.19 -0.89 10.46 -26.73 -0.28 -1.17 16 29 C -0.19 -0.74 10.45 -26.73 -0.28 -1.02 16 30 H 0.07 0.14 7.56 -51.93 -0.39 -0.25 16 31 H 0.06 0.28 8.13 -51.93 -0.42 -0.14 16 32 H 0.07 0.23 7.74 -51.93 -0.40 -0.17 16 33 H 0.35 2.49 8.29 -39.29 -0.33 2.16 16 34 H 0.10 0.70 8.12 -51.92 -0.42 0.28 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.40 4.12 8.73 -40.82 -0.36 3.76 16 37 H 0.10 1.80 8.14 -51.92 -0.42 1.38 16 38 H 0.10 1.76 8.14 -51.91 -0.42 1.34 16 39 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 42 H 0.40 1.16 8.25 -40.82 -0.34 0.82 16 43 H 0.14 1.07 7.40 -51.93 -0.38 0.69 16 44 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.10 0.44 8.14 -51.92 -0.42 0.01 16 46 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 LS Contribution 405.06 15.07 6.10 6.10 Total: -1.00 -36.90 405.06 -9.94 -46.83 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -7.61 Total: 3.13 kcal Atomic # 6 Polarization: -2.96 SS G_CDS: -1.52 Total: -4.48 kcal Atomic # 7 Polarization: -45.07 SS G_CDS: -0.38 Total: -45.46 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: 0.17 Total: -17.73 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.71 Total: 17.25 kcal Atomic # 16 Polarization: -3.66 SS G_CDS: -1.99 Total: -5.65 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -36.90 -9.94 -46.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731470365.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.537 kcal (2) G-P(sol) polarization free energy of solvation -36.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds