Wall clock time and date at job start Wed Apr 1 2020 00:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47178 * 2 1 4 4 N 1.46902 * 109.46921 * 120.00065 * 2 1 3 5 5 C 1.46909 * 110.99552 * 274.99888 * 4 2 1 6 6 H 1.08998 * 112.85059 * 23.79938 * 5 4 2 7 7 C 1.53778 * 113.61313 * 155.00104 * 5 4 2 8 8 C 1.53781 * 87.08280 * 139.97884 * 7 5 4 9 9 H 1.08994 * 113.61330 * 89.19634 * 8 7 5 10 10 N 1.46504 * 113.61469 * 220.02121 * 8 7 5 11 11 C 1.34775 * 119.99565 * 204.99539 * 10 8 7 12 12 O 1.21275 * 120.00279 * 0.02562 * 11 10 8 13 13 C 1.50703 * 119.99776 * 179.97438 * 11 10 8 14 14 S 1.81000 * 109.47042 * 180.02562 * 13 11 10 15 15 C 1.76199 * 99.99871 * 180.02562 * 14 13 11 16 16 H 1.08009 * 120.00150 * 359.72084 * 15 14 13 17 17 C 1.38795 * 120.00161 * 180.02562 * 15 14 13 18 18 N 1.31634 * 120.00398 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 119.99794 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.46867 * 90.00305 * 19 17 15 21 21 H 1.48501 * 109.47216 * 210.00162 * 19 17 15 22 22 H 1.48490 * 109.47426 * 330.00223 * 19 17 15 23 23 C 1.53781 * 113.61093 * 252.49494 * 5 4 2 24 24 C 1.50702 * 109.46962 * 239.99556 * 2 1 3 25 25 O 1.21281 * 119.99607 * 240.00242 * 24 2 1 26 26 N 1.34771 * 119.99849 * 60.00283 * 24 2 1 27 27 C 1.46505 * 119.99863 * 180.02562 * 26 24 2 28 28 C 1.53003 * 117.49471 * 223.62316 * 27 26 24 29 29 C 1.52996 * 117.50082 * 155.00137 * 27 26 24 30 30 H 1.09001 * 109.47059 * 60.00335 * 1 2 3 31 31 H 1.09000 * 109.47501 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47416 * 300.00488 * 1 2 3 33 33 H 1.00902 * 111.00428 * 38.94535 * 4 2 1 34 34 H 1.09011 * 113.61524 * 25.43020 * 7 5 4 35 35 H 1.08995 * 113.61418 * 254.52944 * 7 5 4 36 36 H 0.96993 * 120.00065 * 24.99771 * 10 8 7 37 37 H 1.09000 * 109.46904 * 60.00309 * 13 11 10 38 38 H 1.09005 * 109.47194 * 300.00350 * 13 11 10 39 39 H 0.96996 * 120.00460 * 179.97438 * 18 17 15 40 40 H 1.09000 * 113.61361 * 105.47305 * 23 5 4 41 41 H 1.09002 * 113.61614 * 334.57269 * 23 5 4 42 42 H 0.96997 * 120.00137 * 0.02562 * 26 24 2 43 43 H 1.09004 * 115.54764 * 9.32556 * 27 26 24 44 44 H 1.08997 * 117.50476 * 359.97438 * 28 27 26 45 45 H 1.09007 * 117.49462 * 145.01647 * 28 27 26 46 46 H 1.09004 * 117.50119 * 214.97422 * 29 27 26 47 47 H 1.09004 * 117.49684 * 359.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.0824 0.2227 2.3469 6 1 1.4067 1.0723 2.2481 7 6 1.9844 -0.4875 3.7074 8 6 3.0598 0.4914 4.2074 9 1 2.6523 1.4147 4.6191 10 7 4.0578 -0.1298 5.0817 11 6 4.7305 0.6211 5.9762 12 8 4.5094 1.8107 6.0577 13 6 5.7567 -0.0179 6.8761 14 16 6.4797 1.2416 7.9564 15 6 7.6107 0.2473 8.8713 16 1 7.6806 -0.8122 8.6735 17 6 8.4072 0.8245 9.8504 18 7 9.2525 0.0819 10.5336 19 14 8.2807 2.6556 10.1979 20 1 7.2544 2.8909 11.2449 21 1 9.5946 3.1618 10.6699 22 1 7.8928 3.3696 8.9551 23 6 3.5152 0.6156 2.7438 24 6 2.0323 -0.7105 -1.2304 25 8 2.7295 -1.6966 -1.1190 26 7 1.7067 -0.2501 -2.4545 27 6 2.1945 -0.9412 -3.6507 28 6 2.7316 -0.0790 -4.7949 29 6 1.3818 -0.7852 -4.9375 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.4494 -1.4979 1.4102 34 1 2.3162 -1.5256 3.6830 35 1 1.0185 -0.3622 4.1967 36 1 4.2344 -1.0813 5.0168 37 1 6.5411 -0.4700 6.2690 38 1 5.2790 -0.7866 7.4837 39 1 9.8095 0.4853 11.2176 40 1 3.7852 1.6314 2.4552 41 1 4.2655 -0.1208 2.4559 42 1 1.1494 0.5388 -2.5435 43 1 2.6782 -1.9019 -3.4741 44 1 2.7216 1.0023 -4.6579 45 1 3.5689 -0.4725 -5.3713 46 1 1.3311 -1.6432 -5.6079 47 1 0.4839 -0.1687 -4.8941 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731470365.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:54 Heat of formation + Delta-G solvation = -53.106542 kcal Electronic energy + Delta-G solvation = -26026.590123 eV Core-core repulsion = 22142.818858 eV Total energy + Delta-G solvation = -3883.771266 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.27702 -40.80192 -39.46009 -38.04544 -36.27590 -34.67761 -34.38148 -33.60407 -30.97594 -29.73078 -27.86042 -26.70795 -25.76306 -24.22059 -23.26968 -22.50303 -21.73923 -21.35666 -20.85271 -19.80771 -18.26360 -17.87740 -17.71543 -17.47407 -17.08516 -16.51524 -16.46572 -16.20157 -15.80117 -15.66994 -15.29899 -15.13377 -14.94836 -14.86862 -14.60976 -13.92054 -13.68730 -13.58230 -13.36350 -13.35070 -13.29712 -13.09950 -12.97658 -12.77017 -12.56780 -12.44454 -12.31949 -12.23604 -11.92217 -11.83303 -11.54756 -11.46569 -11.17018 -10.96473 -10.73749 -10.54036 -10.02512 -9.71892 -9.34793 -8.99376 -8.51435 -6.22443 0.99583 1.31545 1.47164 1.56491 1.56751 1.62879 2.00313 2.24425 2.30451 2.72203 2.86731 2.99192 3.25154 3.53774 3.57972 3.72459 3.83294 3.89306 3.97042 3.98100 4.05398 4.06932 4.10421 4.17705 4.24463 4.47224 4.52144 4.69268 4.76199 4.77440 4.82670 4.85751 4.86749 5.02399 5.03862 5.09621 5.15735 5.20194 5.20773 5.54128 5.59388 5.70598 6.03746 6.11202 6.38266 6.50684 6.60461 6.93562 7.21618 7.31773 8.61064 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.025178 B = 0.001578 C = 0.001544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.820617 B =17743.085767 C =18135.318166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.072 3.928 3 H 0.116 0.884 4 N -0.669 5.669 5 C 0.079 3.921 6 H 0.099 0.901 7 C -0.130 4.130 8 C 0.115 3.885 9 H 0.101 0.899 10 N -0.701 5.701 11 C 0.536 3.464 12 O -0.563 6.563 13 C -0.114 4.114 14 S -0.174 6.174 15 C -0.531 4.531 16 H 0.061 0.939 17 C 0.046 3.954 18 N -0.917 5.917 19 Si 0.916 3.084 20 H -0.261 1.261 21 H -0.259 1.259 22 H -0.237 1.237 23 C -0.142 4.142 24 C 0.516 3.484 25 O -0.569 6.569 26 N -0.693 5.693 27 C 0.053 3.947 28 C -0.191 4.191 29 C -0.170 4.170 30 H 0.084 0.916 31 H 0.059 0.941 32 H 0.080 0.920 33 H 0.353 0.647 34 H 0.101 0.899 35 H 0.093 0.907 36 H 0.415 0.585 37 H 0.110 0.890 38 H 0.113 0.887 39 H 0.277 0.723 40 H 0.060 0.940 41 H 0.080 0.920 42 H 0.415 0.585 43 H 0.111 0.889 44 H 0.105 0.895 45 H 0.102 0.898 46 H 0.109 0.891 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.794 -0.422 -31.388 40.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.041 4.041 3 H 0.134 0.866 4 N -0.301 5.301 5 C -0.032 4.032 6 H 0.117 0.883 7 C -0.169 4.169 8 C 0.009 3.991 9 H 0.119 0.881 10 N -0.353 5.353 11 C 0.322 3.678 12 O -0.442 6.442 13 C -0.264 4.264 14 S 0.053 5.947 15 C -0.679 4.679 16 H 0.079 0.921 17 C -0.159 4.159 18 N -0.555 5.555 19 Si 0.737 3.263 20 H -0.186 1.186 21 H -0.183 1.183 22 H -0.161 1.161 23 C -0.182 4.182 24 C 0.303 3.697 25 O -0.446 6.446 26 N -0.345 5.345 27 C -0.053 4.053 28 C -0.229 4.229 29 C -0.208 4.208 30 H 0.103 0.897 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.174 0.826 34 H 0.119 0.881 35 H 0.111 0.889 36 H 0.252 0.748 37 H 0.128 0.872 38 H 0.132 0.868 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.099 0.901 42 H 0.252 0.748 43 H 0.129 0.871 44 H 0.123 0.877 45 H 0.121 0.879 46 H 0.127 0.873 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -23.874 0.864 -31.183 39.282 hybrid contribution 0.008 -1.077 0.572 1.220 sum -23.866 -0.214 -30.611 38.816 Atomic orbital electron populations 1.22433 0.92534 1.03325 1.04790 1.21546 0.95631 0.98571 0.88396 0.86584 1.60076 1.58261 1.09333 1.02418 1.22741 0.96332 0.95703 0.88376 0.88329 1.23534 0.99113 0.99535 0.94722 1.22439 0.89603 0.98156 0.88857 0.88075 1.45747 1.40196 1.12534 1.36868 1.19954 0.81083 0.86586 0.80178 1.90669 1.66590 1.16720 1.70179 1.23298 1.00643 1.02261 1.00242 1.84654 1.49110 1.15966 1.44991 1.22479 1.25146 0.96802 1.23452 0.92108 1.25575 0.93336 1.02909 0.94128 1.70019 1.23875 1.38135 1.23498 0.85850 0.79161 0.80112 0.81137 1.18556 1.18297 1.16107 1.23590 0.98376 1.01600 0.94617 1.21146 0.79206 0.84168 0.85181 1.90693 1.38731 1.28139 1.87072 1.45301 1.53226 1.31882 1.04085 1.21563 1.04120 0.98236 0.81368 1.23486 0.98324 0.99836 1.01270 1.23444 0.95657 1.03825 0.97891 0.89679 0.92194 0.90064 0.82574 0.88098 0.88862 0.74760 0.87153 0.86846 0.91359 0.92119 0.90107 0.74780 0.87067 0.87653 0.87917 0.87275 0.86888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.75 9.05 71.98 0.65 -0.10 16 2 C 0.07 0.74 2.85 44.17 0.13 0.86 16 3 H 0.12 0.96 7.84 -2.39 -0.02 0.94 16 4 N -0.67 -9.15 5.80 -470.60 -2.73 -11.88 16 5 C 0.08 0.97 3.84 45.44 0.17 1.14 16 6 H 0.10 0.87 7.49 -2.39 -0.02 0.85 16 7 C -0.13 -1.62 7.40 31.12 0.23 -1.39 16 8 C 0.11 2.30 4.24 45.52 0.19 2.50 16 9 H 0.10 2.38 7.46 -2.39 -0.02 2.36 16 10 N -0.70 -16.90 5.35 -440.04 -2.36 -19.26 16 11 C 0.54 18.69 7.85 87.66 0.69 19.37 16 12 O -0.56 -24.11 15.46 -3.01 -0.05 -24.16 16 13 C -0.11 -4.37 6.16 71.24 0.44 -3.93 16 14 S -0.17 -8.91 18.55 -56.49 -1.05 -9.96 16 15 C -0.53 -31.43 10.04 67.95 0.68 -30.75 16 16 H 0.06 3.80 8.03 -2.91 -0.02 3.78 16 17 C 0.05 2.72 5.50 84.86 0.47 3.19 16 18 N -0.92 -56.48 13.97 21.65 0.30 -56.18 16 19 Si 0.92 45.44 27.74 68.60 1.90 47.34 16 20 H -0.26 -12.58 7.11 99.48 0.71 -11.87 16 21 H -0.26 -12.02 7.11 99.48 0.71 -11.32 16 22 H -0.24 -11.76 6.74 99.48 0.67 -11.09 16 23 C -0.14 -2.69 7.68 31.12 0.24 -2.45 16 24 C 0.52 8.40 7.22 87.66 0.63 9.04 16 25 O -0.57 -15.24 16.00 -3.03 -0.05 -15.29 16 26 N -0.69 -7.06 5.46 -442.53 -2.42 -9.48 16 27 C 0.05 0.62 6.43 44.99 0.29 0.91 16 28 C -0.19 -1.50 10.46 30.60 0.32 -1.18 16 29 C -0.17 -1.00 10.45 30.59 0.32 -0.68 16 30 H 0.08 0.06 7.56 -2.39 -0.02 0.05 16 31 H 0.06 0.37 8.13 -2.39 -0.02 0.35 16 32 H 0.08 0.23 7.74 -2.38 -0.02 0.21 16 33 H 0.35 4.42 8.29 -89.69 -0.74 3.67 16 34 H 0.10 1.19 8.12 -2.38 -0.02 1.18 16 35 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.42 7.70 8.73 -92.71 -0.81 6.89 16 37 H 0.11 3.98 8.14 -2.39 -0.02 3.96 16 38 H 0.11 4.00 8.14 -2.39 -0.02 3.98 16 39 H 0.28 15.74 8.31 -92.71 -0.77 14.97 16 40 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.41 1.44 8.25 -92.71 -0.76 0.68 16 43 H 0.11 1.90 7.40 -2.39 -0.02 1.88 16 44 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.10 0.80 8.14 -2.38 -0.02 0.78 16 46 H 0.11 0.53 8.14 -2.38 -0.02 0.51 16 47 H 0.11 0.31 8.14 -2.39 -0.02 0.30 16 Total: -1.00 -82.43 405.06 -2.33 -84.77 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -1.35 Total: 17.56 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: 5.45 Total: -3.46 kcal Atomic # 7 Polarization: -89.60 SS G_CDS: -7.20 Total: -96.80 kcal Atomic # 8 Polarization: -39.36 SS G_CDS: -0.10 Total: -39.45 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 1.90 Total: 47.34 kcal Atomic # 16 Polarization: -8.91 SS G_CDS: -1.05 Total: -9.96 kcal Total: -82.43 -2.33 -84.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731470365.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.661 kcal (2) G-P(sol) polarization free energy of solvation -82.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds