Wall clock time and date at job start Wed Apr 1 2020 00:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47337 * 2 1 4 4 N 1.46902 * 109.47165 * 240.00236 * 2 1 3 5 5 C 1.46902 * 111.00017 * 84.99799 * 4 2 1 6 6 H 1.09004 * 112.84421 * 23.80723 * 5 4 2 7 7 C 1.53778 * 113.61136 * 154.99897 * 5 4 2 8 8 C 1.53787 * 87.08035 * 140.06699 * 7 5 4 9 9 H 1.09004 * 113.61202 * 89.11582 * 8 7 5 10 10 N 1.46496 * 113.61566 * 220.01945 * 8 7 5 11 11 C 1.34776 * 120.00015 * 205.00016 * 10 8 7 12 12 O 1.21280 * 119.99898 * 359.97438 * 11 10 8 13 13 C 1.50704 * 120.00197 * 180.02562 * 11 10 8 14 14 S 1.81002 * 109.46984 * 179.97438 * 13 11 10 15 15 C 1.76198 * 99.99628 * 180.02562 * 14 13 11 16 16 H 1.08005 * 120.00329 * 0.02562 * 15 14 13 17 17 C 1.38796 * 119.99939 * 180.02562 * 15 14 13 18 18 N 1.31633 * 120.00053 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 120.00199 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.46800 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47285 * 119.99632 * 19 17 15 22 22 H 1.48509 * 109.46754 * 239.99884 * 19 17 15 23 23 C 1.53778 * 113.69128 * 252.53711 * 5 4 2 24 24 C 1.50701 * 109.47027 * 120.00118 * 2 1 3 25 25 O 1.21289 * 119.99965 * 119.99938 * 24 2 1 26 26 N 1.34772 * 120.00136 * 299.99634 * 24 2 1 27 27 C 1.46498 * 119.99865 * 179.97438 * 26 24 2 28 28 C 1.53001 * 117.50094 * 223.62658 * 27 26 24 29 29 C 1.53001 * 117.49837 * 155.00274 * 27 26 24 30 30 H 1.08997 * 109.46924 * 299.99831 * 1 2 3 31 31 H 1.09003 * 109.47161 * 59.99571 * 1 2 3 32 32 H 1.09000 * 109.47007 * 179.97438 * 1 2 3 33 33 H 1.00900 * 111.00045 * 321.04390 * 4 2 1 34 34 H 1.08998 * 113.61879 * 25.52181 * 7 5 4 35 35 H 1.08997 * 113.69304 * 254.62267 * 7 5 4 36 36 H 0.96998 * 120.00377 * 24.99850 * 10 8 7 37 37 H 1.09003 * 109.46837 * 299.99928 * 13 11 10 38 38 H 1.09000 * 109.47088 * 59.99953 * 13 11 10 39 39 H 0.97000 * 120.00195 * 179.97438 * 18 17 15 40 40 H 1.08993 * 113.61229 * 105.46235 * 23 5 4 41 41 H 1.09000 * 113.61263 * 334.55885 * 23 5 4 42 42 H 0.96996 * 120.00379 * 0.02562 * 26 24 2 43 43 H 1.09003 * 115.54969 * 9.33351 * 27 26 24 44 44 H 1.09007 * 117.49541 * 359.97438 * 28 27 26 45 45 H 1.08998 * 117.50556 * 145.02639 * 28 27 26 46 46 H 1.09000 * 117.50217 * 214.98087 * 29 27 26 47 47 H 1.09004 * 117.49681 * 359.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0824 0.2227 -2.3469 6 1 2.1683 1.2681 -2.0503 7 6 3.1031 -0.1999 -3.4167 8 6 2.0671 0.2379 -4.4655 9 1 2.1487 1.2875 -4.7482 10 7 1.9864 -0.6592 -5.6208 11 6 1.5427 -0.1941 -6.8055 12 8 1.2098 0.9670 -6.9148 13 6 1.4591 -1.1170 -7.9939 14 16 0.8309 -0.2033 -9.4244 15 6 0.8349 -1.4859 -10.6325 16 1 1.1657 -2.4787 -10.3650 17 6 0.4128 -1.2206 -11.9278 18 7 0.0091 -0.0108 -12.2537 19 14 0.4164 -2.5806 -13.2084 20 1 0.9110 -3.8384 -12.5933 21 1 -0.9640 -2.7865 -13.7156 22 1 1.3056 -2.1977 -14.3346 23 6 0.9912 -0.0313 -3.4002 24 6 2.0323 -0.7104 1.2305 25 8 2.7296 -1.6966 1.1192 26 7 1.7068 -0.2500 2.4545 27 6 2.1947 -0.9410 3.6507 28 6 1.2023 -1.1595 4.7945 29 6 2.3188 -0.1231 4.9377 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.4496 -1.4979 -1.4101 34 1 3.3081 -1.2704 -3.4260 35 1 4.0100 0.4047 -3.4199 36 1 2.2523 -1.5879 -5.5333 37 1 2.4508 -1.5093 -8.2197 38 1 0.7850 -1.9427 -7.7660 39 1 -0.2855 0.1748 -13.1590 40 1 0.1926 0.7104 -3.3890 41 1 0.6188 -1.0557 -3.4048 42 1 1.1489 0.5384 2.5436 43 1 2.9387 -1.7178 3.4742 44 1 0.1865 -0.7886 4.6573 45 1 1.2933 -2.0801 5.3709 46 1 3.1443 -0.3621 5.6083 47 1 2.0379 0.9292 4.8944 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731470366.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:57 Heat of formation + Delta-G solvation = -25.080884 kcal Electronic energy + Delta-G solvation = -25950.938673 eV Core-core repulsion = 22068.382691 eV Total energy + Delta-G solvation = -3882.555982 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.55216 -39.87385 -38.37303 -37.51046 -35.46958 -33.44301 -32.77554 -32.42196 -29.79949 -28.73040 -25.93261 -25.50950 -25.15799 -23.36268 -22.95375 -22.05447 -20.92575 -20.33290 -20.09099 -17.81127 -17.56517 -17.17411 -16.62207 -16.28673 -15.81786 -15.42848 -15.12179 -14.91618 -14.80110 -14.60726 -14.45632 -14.19935 -13.89071 -13.33813 -13.23800 -13.02375 -12.93578 -12.73465 -12.64770 -12.58536 -12.17716 -12.08286 -11.94683 -11.76292 -11.42896 -11.14199 -11.07124 -11.05237 -11.00948 -10.96045 -10.72874 -10.07523 -9.79440 -9.36371 -9.23228 -9.07301 -8.92202 -8.64934 -8.22656 -6.49366 -6.21444 -3.91750 2.22361 2.49556 3.05501 3.08070 3.21979 3.28885 3.33843 3.37153 3.65478 3.87348 4.17691 4.20899 4.22706 4.33170 4.35644 4.42438 4.43067 4.51812 4.60207 4.72284 4.74072 5.01524 5.05829 5.13909 5.14530 5.16109 5.25389 5.33455 5.39278 5.50004 5.51437 5.52564 5.59239 5.65025 5.77988 5.82131 5.90594 6.00049 6.05336 6.15714 6.59372 6.70231 6.91990 7.07107 7.60493 7.74540 7.86383 8.35988 8.63041 9.24204 10.86074 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.038872 B = 0.001449 C = 0.001437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.143331 B =19313.764715 C =19474.879267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.069 3.931 3 H 0.106 0.894 4 N -0.653 5.653 5 C 0.071 3.929 6 H 0.101 0.899 7 C -0.133 4.133 8 C 0.127 3.873 9 H 0.115 0.885 10 N -0.727 5.727 11 C 0.533 3.467 12 O -0.519 6.519 13 C -0.154 4.154 14 S -0.061 6.061 15 C -0.535 4.535 16 H 0.073 0.927 17 C 0.074 3.926 18 N -0.868 5.868 19 Si 0.918 3.082 20 H -0.272 1.272 21 H -0.280 1.280 22 H -0.280 1.280 23 C -0.180 4.180 24 C 0.521 3.479 25 O -0.515 6.515 26 N -0.708 5.708 27 C 0.082 3.918 28 C -0.195 4.195 29 C -0.190 4.190 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.352 0.648 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.399 0.601 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.268 0.732 40 H 0.072 0.928 41 H 0.087 0.913 42 H 0.400 0.600 43 H 0.137 0.863 44 H 0.096 0.904 45 H 0.102 0.898 46 H 0.103 0.897 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.636 0.009 34.235 34.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.044 4.044 3 H 0.124 0.876 4 N -0.283 5.283 5 C -0.040 4.040 6 H 0.119 0.881 7 C -0.172 4.172 8 C 0.021 3.979 9 H 0.133 0.867 10 N -0.380 5.380 11 C 0.319 3.681 12 O -0.393 6.393 13 C -0.305 4.305 14 S 0.165 5.835 15 C -0.683 4.683 16 H 0.091 0.909 17 C -0.136 4.136 18 N -0.503 5.503 19 Si 0.745 3.255 20 H -0.196 1.196 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.221 4.221 24 C 0.306 3.694 25 O -0.388 6.388 26 N -0.360 5.360 27 C -0.025 4.025 28 C -0.233 4.233 29 C -0.229 4.229 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.173 0.827 34 H 0.110 0.890 35 H 0.094 0.906 36 H 0.233 0.767 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.077 0.923 40 H 0.091 0.909 41 H 0.105 0.895 42 H 0.234 0.766 43 H 0.155 0.845 44 H 0.115 0.885 45 H 0.120 0.880 46 H 0.121 0.879 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.210 1.402 33.938 34.119 hybrid contribution -0.823 -2.132 -0.698 2.389 sum 2.387 -0.730 33.241 33.334 Atomic orbital electron populations 1.22518 0.94681 1.03318 1.03469 1.21538 0.94217 0.98665 0.90026 0.87630 1.60057 1.57297 1.08882 1.02076 1.22914 0.96498 0.96377 0.88197 0.88112 1.23464 0.97597 1.02762 0.93377 1.22221 0.95617 0.96355 0.83728 0.86743 1.45956 1.68580 1.13643 1.09775 1.20350 0.75769 0.88635 0.83335 1.90688 1.46784 1.17996 1.83877 1.23544 1.05336 1.02558 0.99060 1.85380 1.83935 1.15356 0.98798 1.22916 1.50903 0.97555 0.96929 0.90876 1.24989 0.94539 0.96315 0.97718 1.70029 1.40855 1.19577 1.19873 0.86121 0.77938 0.80969 0.80493 1.19605 1.20575 1.20558 1.24237 0.98237 1.02684 0.96956 1.20686 0.79975 0.84746 0.83946 1.90714 1.36198 1.25546 1.86295 1.45433 1.53976 1.31773 1.04809 1.21583 1.00845 0.99541 0.80496 1.23430 0.95870 1.01378 1.02646 1.23379 1.01687 0.97633 1.00171 0.91647 0.90827 0.91644 0.82705 0.89031 0.90559 0.76681 0.89193 0.89261 0.92251 0.90929 0.89466 0.76587 0.84489 0.88528 0.87981 0.87852 0.88471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.83 9.06 37.16 0.34 -0.49 16 2 C 0.07 0.43 2.99 -68.86 -0.21 0.23 16 3 H 0.11 0.52 7.46 -51.93 -0.39 0.13 16 4 N -0.65 -5.17 5.86 -100.10 -0.59 -5.75 16 5 C 0.07 0.54 4.00 -66.90 -0.27 0.27 16 6 H 0.10 0.67 7.47 -51.93 -0.39 0.28 16 7 C -0.13 -1.17 7.63 -25.92 -0.20 -1.36 16 8 C 0.13 1.41 4.24 -67.12 -0.28 1.13 16 9 H 0.11 1.48 7.47 -51.93 -0.39 1.09 16 10 N -0.73 -9.52 5.35 -53.01 -0.28 -9.81 16 11 C 0.53 9.86 7.85 -10.98 -0.09 9.77 16 12 O -0.52 -11.66 15.46 5.56 0.09 -11.58 16 13 C -0.15 -3.11 6.16 36.01 0.22 -2.89 16 14 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 15 C -0.53 -15.29 9.50 30.94 0.29 -15.00 16 16 H 0.07 1.99 7.80 -52.48 -0.41 1.58 16 17 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 18 N -0.87 -26.22 13.22 55.49 0.73 -25.49 16 19 Si 0.92 21.47 29.55 -169.99 -5.02 16.45 16 20 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 23 C -0.18 -1.61 7.50 -25.92 -0.19 -1.80 16 24 C 0.52 4.36 7.22 -10.99 -0.08 4.28 16 25 O -0.51 -6.60 16.00 5.55 0.09 -6.52 16 26 N -0.71 -3.97 5.46 -53.80 -0.29 -4.26 16 27 C 0.08 0.48 6.43 -67.93 -0.44 0.04 16 28 C -0.19 -0.81 10.46 -26.73 -0.28 -1.09 16 29 C -0.19 -0.73 10.46 -26.73 -0.28 -1.01 16 30 H 0.06 0.19 7.56 -51.93 -0.39 -0.20 16 31 H 0.07 0.35 8.07 -51.93 -0.42 -0.07 16 32 H 0.06 0.35 8.13 -51.93 -0.42 -0.07 16 33 H 0.35 2.81 7.94 -39.29 -0.31 2.50 16 34 H 0.09 0.81 8.12 -51.93 -0.42 0.38 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.40 4.17 8.73 -40.82 -0.36 3.81 16 37 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 38 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 39 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.09 0.76 7.83 -51.93 -0.41 0.36 16 42 H 0.40 1.16 8.24 -40.82 -0.34 0.83 16 43 H 0.14 1.05 7.40 -51.93 -0.38 0.66 16 44 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 LS Contribution 407.46 15.07 6.14 6.14 Total: -1.00 -36.89 407.46 -10.45 -47.34 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -7.54 Total: 3.28 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: -1.55 Total: -5.93 kcal Atomic # 7 Polarization: -44.88 SS G_CDS: -0.43 Total: -45.31 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: 0.17 Total: -18.09 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -36.89 -10.45 -47.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731470366.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.260 kcal (2) G-P(sol) polarization free energy of solvation -36.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds