Wall clock time and date at job start Wed Apr 1 2020 00:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47337 * 2 1 4 4 N 1.46902 * 109.47165 * 240.00236 * 2 1 3 5 5 C 1.46902 * 111.00017 * 84.99799 * 4 2 1 6 6 H 1.09004 * 112.84421 * 23.80723 * 5 4 2 7 7 C 1.53778 * 113.61136 * 154.99897 * 5 4 2 8 8 C 1.53787 * 87.08035 * 140.06699 * 7 5 4 9 9 H 1.09004 * 113.61202 * 89.11582 * 8 7 5 10 10 N 1.46496 * 113.61566 * 220.01945 * 8 7 5 11 11 C 1.34776 * 120.00015 * 205.00016 * 10 8 7 12 12 O 1.21280 * 119.99898 * 359.97438 * 11 10 8 13 13 C 1.50704 * 120.00197 * 180.02562 * 11 10 8 14 14 S 1.81002 * 109.46984 * 179.97438 * 13 11 10 15 15 C 1.76198 * 99.99628 * 180.02562 * 14 13 11 16 16 H 1.08005 * 120.00329 * 0.02562 * 15 14 13 17 17 C 1.38796 * 119.99939 * 180.02562 * 15 14 13 18 18 N 1.31633 * 120.00053 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 120.00199 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.46800 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47285 * 119.99632 * 19 17 15 22 22 H 1.48509 * 109.46754 * 239.99884 * 19 17 15 23 23 C 1.53778 * 113.69128 * 252.53711 * 5 4 2 24 24 C 1.50701 * 109.47027 * 120.00118 * 2 1 3 25 25 O 1.21289 * 119.99965 * 119.99938 * 24 2 1 26 26 N 1.34772 * 120.00136 * 299.99634 * 24 2 1 27 27 C 1.46498 * 119.99865 * 179.97438 * 26 24 2 28 28 C 1.53001 * 117.50094 * 223.62658 * 27 26 24 29 29 C 1.53001 * 117.49837 * 155.00274 * 27 26 24 30 30 H 1.08997 * 109.46924 * 299.99831 * 1 2 3 31 31 H 1.09003 * 109.47161 * 59.99571 * 1 2 3 32 32 H 1.09000 * 109.47007 * 179.97438 * 1 2 3 33 33 H 1.00900 * 111.00045 * 321.04390 * 4 2 1 34 34 H 1.08998 * 113.61879 * 25.52181 * 7 5 4 35 35 H 1.08997 * 113.69304 * 254.62267 * 7 5 4 36 36 H 0.96998 * 120.00377 * 24.99850 * 10 8 7 37 37 H 1.09003 * 109.46837 * 299.99928 * 13 11 10 38 38 H 1.09000 * 109.47088 * 59.99953 * 13 11 10 39 39 H 0.97000 * 120.00195 * 179.97438 * 18 17 15 40 40 H 1.08993 * 113.61229 * 105.46235 * 23 5 4 41 41 H 1.09000 * 113.61263 * 334.55885 * 23 5 4 42 42 H 0.96996 * 120.00379 * 0.02562 * 26 24 2 43 43 H 1.09003 * 115.54969 * 9.33351 * 27 26 24 44 44 H 1.09007 * 117.49541 * 359.97438 * 28 27 26 45 45 H 1.08998 * 117.50556 * 145.02639 * 28 27 26 46 46 H 1.09000 * 117.50217 * 214.98087 * 29 27 26 47 47 H 1.09004 * 117.49681 * 359.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0824 0.2227 -2.3469 6 1 2.1683 1.2681 -2.0503 7 6 3.1031 -0.1999 -3.4167 8 6 2.0671 0.2379 -4.4655 9 1 2.1487 1.2875 -4.7482 10 7 1.9864 -0.6592 -5.6208 11 6 1.5427 -0.1941 -6.8055 12 8 1.2098 0.9670 -6.9148 13 6 1.4591 -1.1170 -7.9939 14 16 0.8309 -0.2033 -9.4244 15 6 0.8349 -1.4859 -10.6325 16 1 1.1657 -2.4787 -10.3650 17 6 0.4128 -1.2206 -11.9278 18 7 0.0091 -0.0108 -12.2537 19 14 0.4164 -2.5806 -13.2084 20 1 0.9110 -3.8384 -12.5933 21 1 -0.9640 -2.7865 -13.7156 22 1 1.3056 -2.1977 -14.3346 23 6 0.9912 -0.0313 -3.4002 24 6 2.0323 -0.7104 1.2305 25 8 2.7296 -1.6966 1.1192 26 7 1.7068 -0.2500 2.4545 27 6 2.1947 -0.9410 3.6507 28 6 1.2023 -1.1595 4.7945 29 6 2.3188 -0.1231 4.9377 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.4496 -1.4979 -1.4101 34 1 3.3081 -1.2704 -3.4260 35 1 4.0100 0.4047 -3.4199 36 1 2.2523 -1.5879 -5.5333 37 1 2.4508 -1.5093 -8.2197 38 1 0.7850 -1.9427 -7.7660 39 1 -0.2855 0.1748 -13.1590 40 1 0.1926 0.7104 -3.3890 41 1 0.6188 -1.0557 -3.4048 42 1 1.1489 0.5384 2.5436 43 1 2.9387 -1.7178 3.4742 44 1 0.1865 -0.7886 4.6573 45 1 1.2933 -2.0801 5.3709 46 1 3.1443 -0.3621 5.6083 47 1 2.0379 0.9292 4.8944 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731470366.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:57 Heat of formation + Delta-G solvation = -53.564692 kcal Electronic energy + Delta-G solvation = -25952.173823 eV Core-core repulsion = 22068.382691 eV Total energy + Delta-G solvation = -3883.791132 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.29980 -40.77906 -39.47624 -38.02929 -36.22441 -34.59117 -34.35202 -33.57255 -30.91273 -29.71634 -27.67551 -26.65784 -25.71271 -24.21232 -23.26153 -22.54322 -21.69942 -21.46536 -20.88673 -19.76570 -18.20987 -17.83622 -17.68916 -17.41874 -16.88254 -16.50563 -16.36472 -16.28599 -15.84007 -15.57315 -15.18091 -15.06984 -14.85307 -14.61795 -14.41561 -13.99010 -13.64358 -13.62628 -13.42145 -13.32769 -13.16458 -13.15101 -12.91392 -12.63321 -12.54999 -12.43571 -12.27877 -12.19486 -11.94924 -11.79628 -11.64777 -11.45444 -11.15899 -10.89659 -10.71356 -10.27406 -10.01535 -9.70814 -9.30936 -8.66407 -8.35019 -6.12818 1.27687 1.41184 1.47439 1.58754 1.61536 1.63054 2.00974 2.26543 2.35213 2.99288 3.00255 3.19090 3.32941 3.58200 3.65011 3.75837 3.84470 3.92192 3.93709 4.02710 4.06746 4.07849 4.13086 4.17268 4.31246 4.51359 4.56509 4.68642 4.76153 4.77379 4.80713 4.84761 4.86451 5.02056 5.03567 5.09646 5.14450 5.19950 5.21339 5.42082 5.55081 5.60731 6.02300 6.19958 6.33447 6.54628 6.60721 7.06616 7.27236 7.31999 8.74508 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.038872 B = 0.001449 C = 0.001437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.143331 B =19313.764715 C =19474.879267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.073 3.927 3 H 0.124 0.876 4 N -0.665 5.665 5 C 0.087 3.913 6 H 0.115 0.885 7 C -0.124 4.124 8 C 0.113 3.887 9 H 0.095 0.905 10 N -0.702 5.702 11 C 0.535 3.465 12 O -0.566 6.566 13 C -0.131 4.131 14 S -0.150 6.150 15 C -0.547 4.547 16 H 0.082 0.918 17 C 0.015 3.985 18 N -0.911 5.911 19 Si 0.998 3.002 20 H -0.257 1.257 21 H -0.273 1.273 22 H -0.274 1.274 23 C -0.171 4.171 24 C 0.517 3.483 25 O -0.568 6.568 26 N -0.693 5.693 27 C 0.054 3.946 28 C -0.186 4.186 29 C -0.175 4.175 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.055 0.945 33 H 0.351 0.649 34 H 0.095 0.905 35 H 0.079 0.921 36 H 0.415 0.585 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.271 0.729 40 H 0.069 0.931 41 H 0.092 0.908 42 H 0.415 0.585 43 H 0.112 0.888 44 H 0.106 0.894 45 H 0.104 0.896 46 H 0.108 0.892 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.583 -0.929 36.048 36.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.041 4.041 3 H 0.142 0.858 4 N -0.295 5.295 5 C -0.024 4.024 6 H 0.133 0.867 7 C -0.163 4.163 8 C 0.007 3.993 9 H 0.113 0.887 10 N -0.354 5.354 11 C 0.321 3.679 12 O -0.445 6.445 13 C -0.283 4.283 14 S 0.077 5.923 15 C -0.695 4.695 16 H 0.100 0.900 17 C -0.190 4.190 18 N -0.548 5.548 19 Si 0.820 3.180 20 H -0.181 1.181 21 H -0.199 1.199 22 H -0.199 1.199 23 C -0.211 4.211 24 C 0.304 3.696 25 O -0.446 6.446 26 N -0.345 5.345 27 C -0.052 4.052 28 C -0.225 4.225 29 C -0.213 4.213 30 H 0.104 0.896 31 H 0.094 0.906 32 H 0.074 0.926 33 H 0.172 0.828 34 H 0.113 0.887 35 H 0.098 0.902 36 H 0.252 0.748 37 H 0.126 0.874 38 H 0.127 0.873 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.110 0.890 42 H 0.252 0.748 43 H 0.130 0.870 44 H 0.125 0.875 45 H 0.122 0.878 46 H 0.126 0.874 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 3.155 0.462 35.837 35.978 hybrid contribution -0.761 -1.842 -1.064 2.259 sum 2.394 -1.380 34.773 34.882 Atomic orbital electron populations 1.22456 0.93170 1.03065 1.04586 1.21590 0.95254 0.98869 0.88339 0.85818 1.59997 1.57861 1.09122 1.02546 1.22796 0.94882 0.97024 0.87702 0.86671 1.23424 0.97402 1.03001 0.92487 1.22446 0.98381 0.95121 0.83342 0.88659 1.45753 1.66359 1.14724 1.08590 1.20071 0.75978 0.87611 0.84276 1.90676 1.49384 1.19706 1.84687 1.23396 1.06137 1.02198 0.96530 1.85538 1.85145 1.18618 1.03016 1.23244 1.51003 0.97733 0.97478 0.90013 1.26109 0.93741 0.99014 1.00158 1.70187 1.41892 1.22075 1.20618 0.84914 0.78219 0.77725 0.77140 1.18112 1.19873 1.19906 1.24176 0.97922 1.02892 0.96120 1.21111 0.79218 0.84129 0.85130 1.90691 1.38845 1.27968 1.87072 1.45306 1.53285 1.31816 1.04098 1.21563 1.01889 1.00471 0.81313 1.23482 0.96205 1.01755 1.01016 1.23450 1.01544 0.98177 0.98114 0.89588 0.90640 0.92569 0.82839 0.88657 0.90217 0.74786 0.87382 0.87347 0.91978 0.91181 0.88973 0.74785 0.87013 0.87535 0.87766 0.87357 0.87073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.19 9.06 71.98 0.65 -0.54 16 2 C 0.07 0.77 2.99 44.17 0.13 0.90 16 3 H 0.12 0.86 7.46 -2.39 -0.02 0.85 16 4 N -0.66 -9.47 5.86 -470.60 -2.76 -12.22 16 5 C 0.09 1.14 4.00 45.44 0.18 1.32 16 6 H 0.12 1.23 7.47 -2.38 -0.02 1.21 16 7 C -0.12 -1.96 7.63 31.12 0.24 -1.72 16 8 C 0.11 2.38 4.24 45.52 0.19 2.57 16 9 H 0.10 2.46 7.47 -2.39 -0.02 2.44 16 10 N -0.70 -17.50 5.35 -440.02 -2.36 -19.85 16 11 C 0.53 19.65 7.85 87.66 0.69 20.34 16 12 O -0.57 -26.05 15.46 -3.03 -0.05 -26.10 16 13 C -0.13 -5.23 6.16 71.24 0.44 -4.80 16 14 S -0.15 -8.39 20.57 -56.49 -1.16 -9.55 16 15 C -0.55 -31.43 9.50 67.95 0.65 -30.78 16 16 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 17 C 0.01 0.83 5.49 84.86 0.47 1.30 16 18 N -0.91 -56.12 13.22 21.65 0.29 -55.84 16 19 Si 1.00 43.80 29.55 68.60 2.03 45.83 16 20 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 21 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 22 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 23 C -0.17 -2.76 7.50 31.12 0.23 -2.53 16 24 C 0.52 8.22 7.22 87.66 0.63 8.85 16 25 O -0.57 -14.81 16.00 -3.06 -0.05 -14.86 16 26 N -0.69 -6.82 5.46 -442.53 -2.42 -9.24 16 27 C 0.05 0.60 6.43 44.99 0.29 0.89 16 28 C -0.19 -1.25 10.46 30.60 0.32 -0.93 16 29 C -0.17 -1.02 10.46 30.60 0.32 -0.70 16 30 H 0.09 0.24 7.56 -2.39 -0.02 0.22 16 31 H 0.07 0.53 8.07 -2.39 -0.02 0.51 16 32 H 0.06 0.51 8.13 -2.39 -0.02 0.50 16 33 H 0.35 5.13 7.94 -89.69 -0.71 4.42 16 34 H 0.09 1.48 8.12 -2.39 -0.02 1.46 16 35 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.42 7.77 8.73 -92.71 -0.81 6.96 16 37 H 0.11 3.90 8.14 -2.39 -0.02 3.89 16 38 H 0.11 3.90 8.14 -2.40 -0.02 3.88 16 39 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 40 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.09 1.43 7.83 -2.39 -0.02 1.41 16 42 H 0.41 1.40 8.24 -92.71 -0.76 0.63 16 43 H 0.11 1.83 7.40 -2.39 -0.02 1.81 16 44 H 0.11 0.52 8.14 -2.38 -0.02 0.50 16 45 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 46 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 47 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 Total: -1.00 -83.47 407.46 -2.32 -85.80 By element: Atomic # 1 Polarization: 23.14 SS G_CDS: -1.28 Total: 21.86 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: 5.43 Total: -5.83 kcal Atomic # 7 Polarization: -89.91 SS G_CDS: -7.24 Total: -97.15 kcal Atomic # 8 Polarization: -40.86 SS G_CDS: -0.10 Total: -40.96 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Atomic # 16 Polarization: -8.39 SS G_CDS: -1.16 Total: -9.55 kcal Total: -83.47 -2.32 -85.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731470366.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.231 kcal (2) G-P(sol) polarization free energy of solvation -83.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds