Wall clock time and date at job start Wed Apr 1 2020 00:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50703 * 120.00002 * 2 1 4 4 N 1.46505 * 109.47064 * 125.00219 * 3 2 1 5 5 C 1.46760 * 124.34797 * 269.72922 * 4 3 2 6 6 C 1.54661 * 105.37765 * 162.85705 * 5 4 3 7 7 C 1.54622 * 101.68924 * 25.76060 * 6 5 4 8 8 H 1.09003 * 110.48881 * 216.30551 * 7 6 5 9 9 N 1.46903 * 110.48442 * 93.66574 * 7 6 5 10 10 C 1.46902 * 111.00053 * 158.76921 * 9 7 6 11 11 H 1.09006 * 109.46887 * 35.00620 * 10 9 7 12 12 C 1.52993 * 109.47699 * 275.00529 * 10 9 7 13 13 C 1.53003 * 109.47062 * 154.99781 * 10 9 7 14 14 N 1.46498 * 109.47248 * 305.00577 * 13 10 9 15 15 C 1.34783 * 119.99817 * 179.97438 * 14 13 10 16 16 O 1.21278 * 119.99877 * 0.02562 * 15 14 13 17 17 C 1.50698 * 119.99729 * 179.97438 * 15 14 13 18 18 S 1.81002 * 109.46552 * 180.02562 * 17 15 14 19 19 C 1.76208 * 99.99812 * 179.97438 * 18 17 15 20 20 H 1.07996 * 119.99751 * 359.97438 * 19 18 17 21 21 C 1.38793 * 120.00000 * 179.97438 * 19 18 17 22 22 N 1.31628 * 120.00183 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99981 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47110 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.47038 * 120.00087 * 23 21 19 26 26 H 1.48495 * 109.47476 * 240.00063 * 23 21 19 27 27 C 1.34421 * 124.34606 * 90.02674 * 4 3 2 28 28 O 1.21278 * 124.94438 * 0.38436 * 27 4 3 29 29 H 1.07996 * 120.00097 * 359.97438 * 1 2 3 30 30 H 1.07999 * 119.99862 * 180.02562 * 1 2 3 31 31 H 1.07996 * 120.00097 * 180.02562 * 2 1 3 32 32 H 1.09002 * 109.47152 * 5.00302 * 3 2 1 33 33 H 1.09001 * 109.46980 * 245.00403 * 3 2 1 34 34 H 1.09001 * 110.24370 * 281.97611 * 5 4 3 35 35 H 1.08993 * 110.24973 * 43.98495 * 5 4 3 36 36 H 1.09006 * 111.18839 * 267.58625 * 6 5 4 37 37 H 1.09000 * 110.85193 * 143.78941 * 6 5 4 38 38 H 1.00905 * 111.00095 * 34.82145 * 9 7 6 39 39 H 1.08998 * 109.47616 * 179.97438 * 12 10 9 40 40 H 1.09006 * 109.47025 * 300.00006 * 12 10 9 41 41 H 1.08995 * 109.47124 * 59.99209 * 12 10 9 42 42 H 1.09003 * 109.46634 * 65.00563 * 13 10 9 43 43 H 1.09003 * 109.46857 * 185.00022 * 13 10 9 44 44 H 0.96992 * 120.00501 * 359.97438 * 14 13 10 45 45 H 1.08995 * 109.47224 * 299.99457 * 17 15 14 46 46 H 1.08993 * 109.47232 * 60.00366 * 17 15 14 47 47 H 0.97002 * 120.00003 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.6618 1.8485 2.4644 6 6 3.7495 1.2815 3.4065 7 6 4.9270 1.0613 2.4290 8 1 5.4822 0.1623 2.6967 9 7 5.8145 2.2319 2.4212 10 6 7.1508 1.8761 1.9255 11 1 7.0599 1.1171 1.1485 12 6 7.9932 1.3271 3.0786 13 6 7.8279 3.1201 1.3465 14 7 6.9643 3.7144 0.3232 15 6 7.3579 4.8273 -0.3274 16 8 8.4273 5.3362 -0.0660 17 6 6.4698 5.4383 -1.3804 18 16 7.2708 6.9100 -2.0652 19 6 6.0504 7.4059 -3.2355 20 1 5.1422 6.8319 -3.3446 21 6 6.2564 8.5342 -4.0170 22 7 7.3637 9.2335 -3.8844 23 14 4.9630 9.0596 -5.2582 24 1 3.8203 8.1122 -5.2134 25 1 4.4856 10.4263 -4.9272 26 1 5.5545 9.0583 -6.6203 27 6 4.2629 0.8917 1.0804 28 8 4.7975 0.4258 0.0965 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3586 2.1317 0.0896 33 1 2.6212 1.4026 -0.9314 34 1 2.6898 2.9381 2.4643 35 1 1.6773 1.4957 2.7713 36 1 3.4317 0.3393 3.8531 37 1 4.0121 2.0068 4.1767 38 1 5.8686 2.6508 3.3376 39 1 8.9846 1.0627 2.7107 40 1 8.0841 2.0861 3.8557 41 1 7.5108 0.4410 3.4911 42 1 7.9992 3.8444 2.1429 43 1 8.7815 2.8396 0.8991 44 1 6.1092 3.3072 0.1139 45 1 6.2994 4.7141 -2.1769 46 1 5.5159 5.7182 -0.9334 47 1 7.5078 10.0219 -4.4309 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731580410.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:18:39 Heat of formation + Delta-G solvation = -45.791308 kcal Electronic energy + Delta-G solvation = -27460.815128 eV Core-core repulsion = 23577.361075 eV Total energy + Delta-G solvation = -3883.454053 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.93118 -39.05467 -37.39907 -36.75066 -35.17232 -33.57471 -32.36638 -31.87245 -29.79717 -29.08724 -27.05860 -26.24236 -25.68799 -25.23150 -22.30416 -21.25281 -20.65619 -20.04660 -19.46551 -17.75671 -17.21556 -17.16136 -16.19824 -16.07651 -15.78781 -15.61293 -15.13458 -15.03472 -14.74987 -14.61137 -14.23290 -13.92423 -13.62178 -13.52016 -13.42162 -13.19419 -12.92389 -12.81185 -12.75520 -12.51469 -12.42815 -12.15429 -11.98593 -11.75199 -11.64530 -11.37589 -11.11530 -11.02366 -10.94888 -10.70059 -10.19353 -9.88255 -9.73302 -9.24543 -9.06329 -9.01577 -8.86052 -8.62484 -8.14024 -6.41509 -6.15571 -3.84829 1.72482 2.26066 2.82749 3.16434 3.25300 3.28986 3.32929 3.39993 3.70539 3.86492 3.92019 4.02425 4.26766 4.39552 4.49538 4.61698 4.67715 4.71837 4.80260 4.97754 5.01092 5.06611 5.12322 5.19450 5.24154 5.30211 5.32854 5.38688 5.44309 5.46846 5.52683 5.70274 5.71848 5.80344 5.96903 6.03316 6.04726 6.17552 6.27604 6.36698 6.47850 6.74750 6.84826 6.98177 7.66240 7.91928 7.98677 8.42044 8.82091 9.29847 10.91981 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009512 B = 0.002920 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2943.055004 B = 9587.265750 C =11992.605270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.170 4.170 3 C 0.150 3.850 4 N -0.610 5.610 5 C 0.108 3.892 6 C -0.134 4.134 7 C 0.054 3.946 8 H 0.081 0.919 9 N -0.663 5.663 10 C 0.066 3.934 11 H 0.094 0.906 12 C -0.178 4.178 13 C 0.137 3.863 14 N -0.723 5.723 15 C 0.530 3.470 16 O -0.526 6.526 17 C -0.151 4.151 18 S -0.062 6.062 19 C -0.533 4.533 20 H 0.072 0.928 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.918 3.082 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 C 0.530 3.470 28 O -0.524 6.524 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.109 0.891 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.353 0.647 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.057 0.943 42 H 0.064 0.936 43 H 0.068 0.932 44 H 0.402 0.598 45 H 0.087 0.913 46 H 0.087 0.913 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.174 -21.423 18.682 30.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.189 4.189 3 C 0.029 3.971 4 N -0.344 5.344 5 C -0.015 4.015 6 C -0.172 4.172 7 C -0.060 4.060 8 H 0.099 0.901 9 N -0.298 5.298 10 C -0.044 4.044 11 H 0.113 0.887 12 C -0.237 4.237 13 C 0.011 3.989 14 N -0.377 5.377 15 C 0.316 3.684 16 O -0.401 6.401 17 C -0.301 4.301 18 S 0.165 5.835 19 C -0.681 4.681 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.504 5.504 23 Si 0.744 3.256 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 C 0.316 3.684 28 O -0.398 6.398 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.127 0.873 32 H 0.104 0.896 33 H 0.112 0.888 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.105 0.895 37 H 0.114 0.886 38 H 0.174 0.826 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.082 0.918 43 H 0.086 0.914 44 H 0.237 0.763 45 H 0.105 0.895 46 H 0.105 0.895 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.262 -20.435 17.868 29.020 hybrid contribution -2.248 -0.991 -0.403 2.490 sum -12.510 -21.426 17.465 30.342 Atomic orbital electron populations 1.23894 0.95665 1.02158 0.99996 1.23335 0.96157 0.99102 1.00311 1.20508 0.91815 0.95314 0.89492 1.48167 1.12463 1.61773 1.11986 1.22069 0.98666 0.99506 0.81269 1.22835 0.94348 1.02778 0.97223 1.22213 0.94547 0.95089 0.94106 0.90146 1.60302 1.10420 1.26499 1.32553 1.21994 0.87362 0.97549 0.97452 0.88738 1.22392 1.01351 1.01253 0.98701 1.21194 0.93195 0.93419 0.91049 1.45784 1.23109 1.28722 1.40128 1.20254 0.86857 0.79650 0.81621 1.90681 1.22994 1.61215 1.65235 1.23499 1.02441 1.04674 0.99518 1.85351 1.27316 1.24130 1.46707 1.22923 1.06195 1.14802 1.24183 0.90953 1.24986 0.96193 0.95408 0.97047 1.70035 1.24488 1.16825 1.39042 0.86130 0.80696 0.78449 0.80291 1.19637 1.20608 1.20592 1.20729 0.81616 0.76347 0.89746 1.90742 1.67747 1.44795 1.36530 0.88262 0.88273 0.87316 0.89616 0.88808 0.90316 0.90539 0.89482 0.88645 0.82590 0.91204 0.91841 0.92405 0.91784 0.91370 0.76317 0.89475 0.89463 0.92319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.09 14.32 29.01 0.42 -0.68 16 2 C -0.17 -1.29 9.85 -36.02 -0.35 -1.64 16 3 C 0.15 1.24 6.37 -5.19 -0.03 1.21 16 4 N -0.61 -5.13 2.92 -173.67 -0.51 -5.63 16 5 C 0.11 0.58 7.36 -3.03 -0.02 0.55 16 6 C -0.13 -0.54 6.86 -25.01 -0.17 -0.71 16 7 C 0.05 0.38 3.03 -67.73 -0.21 0.17 16 8 H 0.08 0.54 7.21 -51.93 -0.37 0.17 16 9 N -0.66 -5.06 5.52 -99.75 -0.55 -5.61 16 10 C 0.07 0.60 2.60 -67.71 -0.18 0.42 16 11 H 0.09 1.03 7.27 -51.93 -0.38 0.66 16 12 C -0.18 -1.16 9.15 37.15 0.34 -0.82 16 13 C 0.14 1.71 5.37 -4.04 -0.02 1.69 16 14 N -0.72 -11.15 5.39 -60.29 -0.32 -11.48 16 15 C 0.53 10.79 7.85 -10.98 -0.09 10.70 16 16 O -0.53 -12.64 15.86 5.56 0.09 -12.55 16 17 C -0.15 -3.30 6.16 36.00 0.22 -3.07 16 18 S -0.06 -1.75 20.57 -107.50 -2.21 -3.96 16 19 C -0.53 -15.67 9.50 30.94 0.29 -15.37 16 20 H 0.07 2.03 7.80 -52.49 -0.41 1.62 16 21 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 22 N -0.87 -26.75 13.22 55.49 0.73 -26.02 16 23 Si 0.92 21.89 29.55 -169.99 -5.02 16.87 16 24 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 27 C 0.53 5.59 7.50 -10.86 -0.08 5.51 16 28 O -0.52 -7.69 17.09 5.56 0.10 -7.59 16 29 H 0.10 0.51 7.84 -52.49 -0.41 0.10 16 30 H 0.10 0.52 8.06 -52.49 -0.42 0.10 16 31 H 0.11 0.93 8.06 -52.49 -0.42 0.50 16 32 H 0.09 0.57 7.79 -51.93 -0.40 0.16 16 33 H 0.09 0.95 7.92 -51.93 -0.41 0.54 16 34 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 37 H 0.10 0.24 7.61 -51.93 -0.40 -0.15 16 38 H 0.35 2.06 7.87 -39.29 -0.31 1.75 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.37 8.13 -51.93 -0.42 -0.05 16 41 H 0.06 0.32 7.45 -51.93 -0.39 -0.07 16 42 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.40 5.83 8.14 -40.82 -0.33 5.49 16 45 H 0.09 1.82 8.14 -51.92 -0.42 1.39 16 46 H 0.09 1.78 8.14 -51.92 -0.42 1.35 16 47 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 407.45 15.07 6.14 6.14 Total: -1.00 -37.40 407.45 -9.13 -46.53 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -7.60 Total: 3.31 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: 0.02 Total: -0.01 kcal Atomic # 7 Polarization: -48.09 SS G_CDS: -0.65 Total: -48.74 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: 0.18 Total: -20.14 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 16 Polarization: -1.75 SS G_CDS: -2.21 Total: -3.96 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -37.40 -9.13 -46.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731580410.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.741 kcal (2) G-P(sol) polarization free energy of solvation -37.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds