Wall clock time and date at job start Wed Apr 1 2020 00:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50703 * 120.00002 * 2 1 4 4 N 1.46505 * 109.47064 * 125.00219 * 3 2 1 5 5 C 1.46760 * 124.34797 * 269.72922 * 4 3 2 6 6 C 1.54661 * 105.37765 * 162.85705 * 5 4 3 7 7 C 1.54622 * 101.68924 * 25.76060 * 6 5 4 8 8 H 1.09003 * 110.48881 * 216.30551 * 7 6 5 9 9 N 1.46903 * 110.48442 * 93.66574 * 7 6 5 10 10 C 1.46902 * 111.00053 * 158.76921 * 9 7 6 11 11 H 1.09006 * 109.46887 * 35.00620 * 10 9 7 12 12 C 1.52993 * 109.47699 * 275.00529 * 10 9 7 13 13 C 1.53003 * 109.47062 * 154.99781 * 10 9 7 14 14 N 1.46498 * 109.47248 * 305.00577 * 13 10 9 15 15 C 1.34783 * 119.99817 * 179.97438 * 14 13 10 16 16 O 1.21278 * 119.99877 * 0.02562 * 15 14 13 17 17 C 1.50698 * 119.99729 * 179.97438 * 15 14 13 18 18 S 1.81002 * 109.46552 * 180.02562 * 17 15 14 19 19 C 1.76208 * 99.99812 * 179.97438 * 18 17 15 20 20 H 1.07996 * 119.99751 * 359.97438 * 19 18 17 21 21 C 1.38793 * 120.00000 * 179.97438 * 19 18 17 22 22 N 1.31628 * 120.00183 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99981 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47110 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.47038 * 120.00087 * 23 21 19 26 26 H 1.48495 * 109.47476 * 240.00063 * 23 21 19 27 27 C 1.34421 * 124.34606 * 90.02674 * 4 3 2 28 28 O 1.21278 * 124.94438 * 0.38436 * 27 4 3 29 29 H 1.07996 * 120.00097 * 359.97438 * 1 2 3 30 30 H 1.07999 * 119.99862 * 180.02562 * 1 2 3 31 31 H 1.07996 * 120.00097 * 180.02562 * 2 1 3 32 32 H 1.09002 * 109.47152 * 5.00302 * 3 2 1 33 33 H 1.09001 * 109.46980 * 245.00403 * 3 2 1 34 34 H 1.09001 * 110.24370 * 281.97611 * 5 4 3 35 35 H 1.08993 * 110.24973 * 43.98495 * 5 4 3 36 36 H 1.09006 * 111.18839 * 267.58625 * 6 5 4 37 37 H 1.09000 * 110.85193 * 143.78941 * 6 5 4 38 38 H 1.00905 * 111.00095 * 34.82145 * 9 7 6 39 39 H 1.08998 * 109.47616 * 179.97438 * 12 10 9 40 40 H 1.09006 * 109.47025 * 300.00006 * 12 10 9 41 41 H 1.08995 * 109.47124 * 59.99209 * 12 10 9 42 42 H 1.09003 * 109.46634 * 65.00563 * 13 10 9 43 43 H 1.09003 * 109.46857 * 185.00022 * 13 10 9 44 44 H 0.96992 * 120.00501 * 359.97438 * 14 13 10 45 45 H 1.08995 * 109.47224 * 299.99457 * 17 15 14 46 46 H 1.08993 * 109.47232 * 60.00366 * 17 15 14 47 47 H 0.97002 * 120.00003 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.6618 1.8485 2.4644 6 6 3.7495 1.2815 3.4065 7 6 4.9270 1.0613 2.4290 8 1 5.4822 0.1623 2.6967 9 7 5.8145 2.2319 2.4212 10 6 7.1508 1.8761 1.9255 11 1 7.0599 1.1171 1.1485 12 6 7.9932 1.3271 3.0786 13 6 7.8279 3.1201 1.3465 14 7 6.9643 3.7144 0.3232 15 6 7.3579 4.8273 -0.3274 16 8 8.4273 5.3362 -0.0660 17 6 6.4698 5.4383 -1.3804 18 16 7.2708 6.9100 -2.0652 19 6 6.0504 7.4059 -3.2355 20 1 5.1422 6.8319 -3.3446 21 6 6.2564 8.5342 -4.0170 22 7 7.3637 9.2335 -3.8844 23 14 4.9630 9.0596 -5.2582 24 1 3.8203 8.1122 -5.2134 25 1 4.4856 10.4263 -4.9272 26 1 5.5545 9.0583 -6.6203 27 6 4.2629 0.8917 1.0804 28 8 4.7975 0.4258 0.0965 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3586 2.1317 0.0896 33 1 2.6212 1.4026 -0.9314 34 1 2.6898 2.9381 2.4643 35 1 1.6773 1.4957 2.7713 36 1 3.4317 0.3393 3.8531 37 1 4.0121 2.0068 4.1767 38 1 5.8686 2.6508 3.3376 39 1 8.9846 1.0627 2.7107 40 1 8.0841 2.0861 3.8557 41 1 7.5108 0.4410 3.4911 42 1 7.9992 3.8444 2.1429 43 1 8.7815 2.8396 0.8991 44 1 6.1092 3.3072 0.1139 45 1 6.2994 4.7141 -2.1769 46 1 5.5159 5.7182 -0.9334 47 1 7.5078 10.0219 -4.4309 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731580410.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:18:38 Heat of formation + Delta-G solvation = -73.913754 kcal Electronic energy + Delta-G solvation = -27462.034609 eV Core-core repulsion = 23577.361075 eV Total energy + Delta-G solvation = -3884.673534 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.60010 -40.56513 -38.28605 -37.52315 -35.92120 -34.71282 -34.58538 -32.63823 -31.03194 -30.01742 -27.74762 -27.67127 -26.91494 -26.38282 -22.82105 -22.05709 -21.61843 -21.23109 -20.12653 -19.80663 -17.94623 -17.83773 -17.69497 -17.36077 -16.89048 -16.66838 -16.43428 -16.06917 -16.00806 -15.64598 -15.50402 -14.94643 -14.70108 -14.50072 -14.25090 -14.20762 -14.05702 -13.92652 -13.70351 -13.32502 -13.21927 -13.16991 -13.07231 -12.91159 -12.78466 -12.57711 -12.47565 -12.15898 -12.05698 -11.83503 -11.70733 -11.16414 -10.98733 -10.91358 -10.44476 -10.29694 -10.03768 -9.72257 -9.48733 -8.67658 -8.35426 -6.13755 1.18305 1.26300 1.40871 1.46024 1.51160 1.58308 1.63319 2.23487 2.26008 2.35375 2.98394 3.10217 3.32359 3.33761 3.55052 3.84158 3.95037 3.96685 3.98709 4.10707 4.11810 4.23604 4.27468 4.35119 4.46435 4.46876 4.51036 4.63478 4.70829 4.74646 4.77842 4.86515 4.93963 4.99217 5.01454 5.15463 5.24740 5.40866 5.47492 5.50033 5.64136 5.78280 5.84079 6.14848 6.19310 6.42643 6.53566 7.05533 7.18398 7.26210 8.74269 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009512 B = 0.002920 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2943.055004 B = 9587.265750 C =11992.605270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.188 4.188 3 C 0.147 3.853 4 N -0.609 5.609 5 C 0.101 3.899 6 C -0.120 4.120 7 C 0.060 3.940 8 H 0.087 0.913 9 N -0.669 5.669 10 C 0.081 3.919 11 H 0.074 0.926 12 C -0.170 4.170 13 C 0.132 3.868 14 N -0.700 5.700 15 C 0.531 3.469 16 O -0.568 6.568 17 C -0.128 4.128 18 S -0.144 6.144 19 C -0.548 4.548 20 H 0.079 0.921 21 C 0.014 3.986 22 N -0.911 5.911 23 Si 1.000 3.000 24 H -0.258 1.258 25 H -0.270 1.270 26 H -0.273 1.273 27 C 0.514 3.486 28 O -0.579 6.579 29 H 0.113 0.887 30 H 0.110 0.890 31 H 0.092 0.908 32 H 0.104 0.896 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.096 0.904 36 H 0.104 0.896 37 H 0.119 0.881 38 H 0.367 0.633 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.058 0.942 44 H 0.409 0.591 45 H 0.097 0.903 46 H 0.105 0.895 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.967 -22.266 20.421 33.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.207 4.207 3 C 0.025 3.975 4 N -0.341 5.341 5 C -0.020 4.020 6 C -0.158 4.158 7 C -0.053 4.053 8 H 0.105 0.895 9 N -0.306 5.306 10 C -0.030 4.030 11 H 0.092 0.908 12 C -0.229 4.229 13 C 0.008 3.992 14 N -0.352 5.352 15 C 0.317 3.683 16 O -0.447 6.447 17 C -0.279 4.279 18 S 0.083 5.917 19 C -0.696 4.696 20 H 0.098 0.902 21 C -0.191 4.191 22 N -0.547 5.547 23 Si 0.822 3.178 24 H -0.182 1.182 25 H -0.196 1.196 26 H -0.198 1.198 27 C 0.301 3.699 28 O -0.458 6.458 29 H 0.131 0.869 30 H 0.128 0.872 31 H 0.111 0.889 32 H 0.122 0.878 33 H 0.083 0.917 34 H 0.098 0.902 35 H 0.114 0.886 36 H 0.123 0.877 37 H 0.137 0.863 38 H 0.191 0.809 39 H 0.084 0.916 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.085 0.915 43 H 0.076 0.924 44 H 0.245 0.755 45 H 0.116 0.884 46 H 0.123 0.877 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.106 -21.307 19.673 31.824 hybrid contribution -1.447 -0.820 -0.888 1.886 sum -14.553 -22.127 18.785 32.469 Atomic orbital electron populations 1.24079 0.94967 1.03335 0.97289 1.23150 0.96671 0.98044 1.02847 1.20520 0.91844 0.96500 0.88612 1.48374 1.11917 1.60623 1.13172 1.22328 1.00222 0.99664 0.79831 1.22887 0.91987 1.04300 0.96583 1.22171 0.95315 0.94987 0.92841 0.89546 1.60138 1.09620 1.27200 1.33628 1.21739 0.88471 0.94896 0.97871 0.90753 1.22324 1.00704 1.02118 0.97735 1.21441 0.92788 0.94859 0.90114 1.45627 1.23402 1.26760 1.39407 1.19998 0.86032 0.80648 0.81636 1.90667 1.24571 1.62816 1.66633 1.23336 1.02652 1.01738 1.00191 1.85485 1.29934 1.28351 1.47933 1.23230 1.06295 1.15479 1.24575 0.90243 1.26138 0.98672 0.95131 0.99140 1.70188 1.26794 1.17441 1.40287 0.84891 0.77585 0.78365 0.76998 1.18211 1.19558 1.19849 1.21458 0.82336 0.75688 0.90433 1.90701 1.69044 1.47320 1.38703 0.86852 0.87206 0.88936 0.87762 0.91663 0.90162 0.88599 0.87719 0.86292 0.80940 0.91580 0.90611 0.90729 0.91494 0.92374 0.75489 0.88442 0.87671 0.91910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.63 14.32 67.78 0.97 -0.66 16 2 C -0.19 -2.76 9.85 25.65 0.25 -2.51 16 3 C 0.15 2.40 6.37 85.63 0.55 2.94 16 4 N -0.61 -9.66 2.92 -821.96 -2.40 -12.05 16 5 C 0.10 0.80 7.36 86.90 0.64 1.44 16 6 C -0.12 -0.54 6.86 31.71 0.22 -0.32 16 7 C 0.06 0.72 3.03 44.90 0.14 0.86 16 8 H 0.09 0.97 7.21 -2.39 -0.02 0.95 16 9 N -0.67 -8.87 5.52 -469.50 -2.59 -11.46 16 10 C 0.08 1.36 2.60 44.91 0.12 1.47 16 11 H 0.07 1.62 7.27 -2.38 -0.02 1.60 16 12 C -0.17 -1.86 9.15 71.98 0.66 -1.20 16 13 C 0.13 3.26 5.37 86.38 0.46 3.72 16 14 N -0.70 -21.44 5.39 -463.05 -2.50 -23.93 16 15 C 0.53 21.88 7.85 87.66 0.69 22.57 16 16 O -0.57 -28.03 15.86 -3.02 -0.05 -28.08 16 17 C -0.13 -5.65 6.16 71.24 0.44 -5.21 16 18 S -0.14 -8.40 20.57 -56.49 -1.16 -9.56 16 19 C -0.55 -32.56 9.50 67.95 0.65 -31.92 16 20 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 21 C 0.01 0.81 5.49 84.86 0.47 1.28 16 22 N -0.91 -57.10 13.22 21.65 0.29 -56.81 16 23 Si 1.00 44.71 29.55 68.60 2.03 46.74 16 24 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 25 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 26 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 27 C 0.51 10.71 7.50 87.90 0.66 11.37 16 28 O -0.58 -17.77 17.09 -3.02 -0.05 -17.82 16 29 H 0.11 0.86 7.84 -2.91 -0.02 0.83 16 30 H 0.11 0.90 8.06 -2.91 -0.02 0.88 16 31 H 0.09 1.64 8.06 -2.91 -0.02 1.62 16 32 H 0.10 1.24 7.79 -2.39 -0.02 1.22 16 33 H 0.07 1.41 7.92 -2.39 -0.02 1.40 16 34 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 36 H 0.10 0.18 8.14 -2.38 -0.02 0.16 16 37 H 0.12 0.04 7.61 -2.39 -0.02 0.02 16 38 H 0.37 3.11 7.87 -89.69 -0.71 2.41 16 39 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.07 0.67 8.13 -2.38 -0.02 0.65 16 41 H 0.07 0.61 7.45 -2.39 -0.02 0.59 16 42 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.41 11.68 8.14 -92.71 -0.75 10.93 16 45 H 0.10 4.08 8.14 -2.40 -0.02 4.06 16 46 H 0.11 4.24 8.14 -2.40 -0.02 4.22 16 47 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 Total: -1.00 -85.37 407.45 -0.02 -85.39 By element: Atomic # 1 Polarization: 24.24 SS G_CDS: -0.49 Total: 23.76 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: 6.90 Total: 3.84 kcal Atomic # 7 Polarization: -97.06 SS G_CDS: -7.20 Total: -104.26 kcal Atomic # 8 Polarization: -45.80 SS G_CDS: -0.10 Total: -45.90 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Atomic # 16 Polarization: -8.40 SS G_CDS: -1.16 Total: -9.56 kcal Total: -85.37 -0.02 -85.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731580410.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.474 kcal (2) G-P(sol) polarization free energy of solvation -85.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds