Wall clock time and date at job start Wed Apr 1 2020 00:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50694 * 120.00177 * 2 1 4 4 N 1.46505 * 109.47432 * 124.99796 * 3 2 1 5 5 C 1.46758 * 124.34988 * 90.00062 * 4 3 2 6 6 C 1.54476 * 105.47492 * 162.98515 * 5 4 3 7 7 C 1.54633 * 101.76296 * 25.41537 * 6 5 4 8 8 H 1.08997 * 110.48632 * 94.01478 * 7 6 5 9 9 N 1.46902 * 110.48329 * 216.52548 * 7 6 5 10 10 C 1.46906 * 110.99476 * 205.00212 * 9 7 6 11 11 H 1.08997 * 109.47271 * 324.99720 * 10 9 7 12 12 C 1.52998 * 109.47171 * 85.00323 * 10 9 7 13 13 C 1.53004 * 109.46512 * 204.99865 * 10 9 7 14 14 N 1.46500 * 109.47331 * 54.99982 * 13 10 9 15 15 C 1.34774 * 119.99961 * 179.97438 * 14 13 10 16 16 O 1.21281 * 120.00138 * 359.97438 * 15 14 13 17 17 C 1.50701 * 119.99741 * 180.02562 * 15 14 13 18 18 S 1.81005 * 109.47173 * 179.97438 * 17 15 14 19 19 C 1.76189 * 100.00097 * 179.97438 * 18 17 15 20 20 H 1.07999 * 120.00127 * 0.02562 * 19 18 17 21 21 C 1.38805 * 120.00013 * 180.02562 * 19 18 17 22 22 N 1.31633 * 120.00034 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 119.99929 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.47174 * 270.00277 * 23 21 19 25 25 H 1.48501 * 109.47062 * 30.00228 * 23 21 19 26 26 H 1.48490 * 109.46901 * 150.00205 * 23 21 19 27 27 C 1.34420 * 124.34696 * 270.00024 * 4 3 2 28 28 O 1.21282 * 124.94520 * 0.44368 * 27 4 3 29 29 H 1.08002 * 120.00071 * 0.02562 * 1 2 3 30 30 H 1.08004 * 120.00263 * 180.02562 * 1 2 3 31 31 H 1.08002 * 120.00071 * 179.97438 * 2 1 3 32 32 H 1.09001 * 109.47318 * 5.00076 * 3 2 1 33 33 H 1.09003 * 109.47366 * 244.99816 * 3 2 1 34 34 H 1.09003 * 110.24394 * 43.98264 * 5 4 3 35 35 H 1.09000 * 110.24504 * 281.98919 * 5 4 3 36 36 H 1.09000 * 110.96993 * 267.29737 * 6 5 4 37 37 H 1.09000 * 111.00010 * 143.54484 * 6 5 4 38 38 H 1.00902 * 111.00246 * 328.94791 * 9 7 6 39 39 H 1.09004 * 109.46648 * 299.99152 * 12 10 9 40 40 H 1.08997 * 109.47515 * 59.99546 * 12 10 9 41 41 H 1.09001 * 109.46962 * 180.02562 * 12 10 9 42 42 H 1.08997 * 109.47505 * 294.99574 * 13 10 9 43 43 H 1.09002 * 109.46765 * 175.00038 * 13 10 9 44 44 H 0.97002 * 119.99685 * 0.02562 * 14 13 10 45 45 H 1.09005 * 109.47318 * 59.99759 * 17 15 14 46 46 H 1.09002 * 109.47150 * 299.99724 * 17 15 14 47 47 H 0.97001 * 119.99662 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3319 1.1315 5 6 4.3791 0.8508 1.0761 6 6 5.0779 1.4636 2.3100 7 6 3.8860 1.6840 3.2701 8 1 3.7742 0.8325 3.9413 9 7 4.0675 2.9227 4.0388 10 6 3.3301 2.8671 5.3082 11 1 2.4018 2.3142 5.1653 12 6 4.1852 2.1640 6.3643 13 6 3.0104 4.2888 5.7748 14 7 2.2942 5.0014 4.7139 15 6 1.9073 6.2786 4.9025 16 8 2.1517 6.8378 5.9506 17 6 1.1701 7.0115 3.8114 18 16 0.7906 8.6929 4.3638 19 6 -0.0446 9.3025 2.9372 20 1 -0.1800 8.6640 2.0767 21 6 -0.5285 10.6033 2.9193 22 7 -1.1520 11.0589 1.8532 23 14 -0.2949 11.7074 4.4079 24 1 -1.4527 11.5534 5.3249 25 1 0.9525 11.3249 5.1170 26 1 -0.1989 13.1215 3.9651 27 6 2.6880 1.8004 2.3537 28 8 1.6086 2.2502 2.6753 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5401 -0.9353 0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3586 2.1316 0.0896 33 1 2.6213 1.4025 -0.9314 34 1 4.8611 1.1937 0.1605 35 1 4.4029 -0.2376 1.1308 36 1 5.5558 2.4101 2.0576 37 1 5.7989 0.7664 2.7369 38 1 5.0462 3.1100 4.1971 39 1 4.4130 1.1512 6.0319 40 1 5.1136 2.7170 6.5073 41 1 3.6380 2.1224 7.3061 42 1 3.9380 4.8137 6.0029 43 1 2.3877 4.2464 6.6685 44 1 2.0978 4.5538 3.8761 45 1 0.2425 6.4863 3.5835 46 1 1.7926 7.0541 2.9176 47 1 -1.4905 11.9678 1.8409 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731580423.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:18:42 Heat of formation + Delta-G solvation = -45.116003 kcal Electronic energy + Delta-G solvation = -27395.736867 eV Core-core repulsion = 23512.312097 eV Total energy + Delta-G solvation = -3883.424770 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.90937 -39.09794 -37.42307 -36.71754 -35.17848 -33.62065 -32.34272 -31.88426 -29.84659 -29.16454 -27.16619 -26.14287 -25.62241 -25.30455 -22.53452 -21.18458 -20.44731 -20.07156 -19.54941 -17.75602 -17.30724 -17.17297 -16.32365 -16.11801 -16.00213 -15.38865 -15.15719 -14.88383 -14.64991 -14.62710 -14.13934 -14.07113 -13.81154 -13.62392 -13.39426 -13.13771 -13.05011 -12.85708 -12.81329 -12.68360 -12.43018 -12.13811 -11.91921 -11.70689 -11.60044 -11.44660 -11.17014 -11.13009 -10.92545 -10.48008 -10.27981 -9.81002 -9.76192 -9.29846 -9.08316 -8.91297 -8.81832 -8.63146 -8.37099 -6.79256 -6.19716 -3.89641 1.77038 2.32194 2.79707 2.93549 3.23039 3.40119 3.46966 3.58557 3.65322 3.85316 3.90008 4.02040 4.42102 4.43826 4.53304 4.55730 4.61421 4.70433 4.76276 4.89263 4.92780 4.96827 4.97897 5.00929 5.19308 5.20948 5.31569 5.36706 5.38508 5.43637 5.55465 5.57485 5.67676 5.76611 5.91513 5.97988 6.13181 6.21956 6.22796 6.34020 6.49614 6.75781 6.85240 6.98700 7.93036 8.01796 8.04332 8.52181 8.77655 9.26872 10.89721 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011284 B = 0.002698 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2480.825743 B =10375.226387 C =12182.020944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.185 4.185 3 C 0.153 3.847 4 N -0.618 5.618 5 C 0.106 3.894 6 C -0.136 4.136 7 C 0.055 3.945 8 H 0.084 0.916 9 N -0.663 5.663 10 C 0.070 3.930 11 H 0.092 0.908 12 C -0.179 4.179 13 C 0.137 3.863 14 N -0.720 5.720 15 C 0.529 3.471 16 O -0.531 6.531 17 C -0.121 4.121 18 S -0.144 6.144 19 C -0.518 4.518 20 H 0.087 0.913 21 C 0.094 3.906 22 N -0.883 5.883 23 Si 0.857 3.143 24 H -0.268 1.268 25 H -0.235 1.235 26 H -0.275 1.275 27 C 0.527 3.473 28 O -0.511 6.511 29 H 0.102 0.898 30 H 0.099 0.901 31 H 0.107 0.893 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.352 0.648 39 H 0.056 0.944 40 H 0.063 0.937 41 H 0.069 0.931 42 H 0.063 0.937 43 H 0.067 0.933 44 H 0.409 0.591 45 H 0.095 0.905 46 H 0.095 0.905 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.189 -29.527 -1.604 33.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.204 4.204 3 C 0.032 3.968 4 N -0.353 5.353 5 C -0.018 4.018 6 C -0.175 4.175 7 C -0.059 4.059 8 H 0.102 0.898 9 N -0.297 5.297 10 C -0.040 4.040 11 H 0.110 0.890 12 C -0.238 4.238 13 C 0.012 3.988 14 N -0.375 5.375 15 C 0.314 3.686 16 O -0.407 6.407 17 C -0.271 4.271 18 S 0.082 5.918 19 C -0.666 4.666 20 H 0.105 0.895 21 C -0.114 4.114 22 N -0.520 5.520 23 Si 0.682 3.318 24 H -0.193 1.193 25 H -0.159 1.159 26 H -0.201 1.201 27 C 0.313 3.687 28 O -0.384 6.384 29 H 0.120 0.880 30 H 0.117 0.883 31 H 0.125 0.875 32 H 0.108 0.892 33 H 0.105 0.895 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.113 0.887 37 H 0.109 0.891 38 H 0.173 0.827 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.245 0.755 45 H 0.113 0.887 46 H 0.113 0.887 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 14.387 -27.853 -0.168 31.350 hybrid contribution 0.144 -1.075 -0.811 1.354 sum 14.531 -28.928 -0.979 32.387 Atomic orbital electron populations 1.23972 0.95922 1.02386 0.97914 1.23223 0.96350 0.98582 1.02218 1.20489 0.91988 0.96155 0.88180 1.48193 1.12951 1.62819 1.11376 1.22025 0.81406 0.98922 0.99413 1.22857 0.96746 1.03120 0.94731 1.22185 0.94867 0.93578 0.95249 0.89809 1.60257 1.16679 1.32991 1.19729 1.21952 0.97794 0.96527 0.87708 0.88953 1.22424 1.00790 1.00422 1.00210 1.21179 0.96795 0.90241 0.90606 1.45792 1.59136 1.12988 1.19545 1.20220 0.78622 0.81297 0.88426 1.90669 1.55367 1.66964 1.27708 1.23251 1.02781 1.00966 1.00145 1.84694 1.75051 1.06191 1.25840 1.22353 1.41350 1.01892 1.00987 0.89454 1.24718 0.93472 0.96955 0.96239 1.69950 1.36563 1.17291 1.28195 0.86723 0.81471 0.80317 0.83276 1.19263 1.15881 1.20066 1.20723 0.88959 0.76367 0.82647 1.90730 1.25721 1.44358 1.77594 0.87978 0.88294 0.87458 0.89208 0.89530 0.90055 0.91194 0.88684 0.89093 0.82715 0.92469 0.91811 0.91236 0.91855 0.91442 0.75466 0.88696 0.88704 0.92062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.28 14.32 29.02 0.42 -0.87 16 2 C -0.18 -1.35 9.85 -36.03 -0.35 -1.71 16 3 C 0.15 1.18 6.37 -5.19 -0.03 1.15 16 4 N -0.62 -4.86 2.92 -173.79 -0.51 -5.36 16 5 C 0.11 0.44 7.35 -3.13 -0.02 0.42 16 6 C -0.14 -0.51 6.60 -25.10 -0.17 -0.67 16 7 C 0.05 0.37 3.02 -67.72 -0.20 0.17 16 8 H 0.08 0.50 7.20 -51.93 -0.37 0.13 16 9 N -0.66 -5.28 5.51 -99.74 -0.55 -5.83 16 10 C 0.07 0.62 2.55 -67.71 -0.17 0.45 16 11 H 0.09 0.97 7.40 -51.93 -0.38 0.59 16 12 C -0.18 -1.11 9.15 37.16 0.34 -0.77 16 13 C 0.14 1.72 5.37 -4.04 -0.02 1.69 16 14 N -0.72 -11.33 5.39 -60.29 -0.32 -11.65 16 15 C 0.53 10.69 7.85 -10.99 -0.09 10.60 16 16 O -0.53 -12.44 15.86 5.56 0.09 -12.35 16 17 C -0.12 -2.64 6.16 36.01 0.22 -2.42 16 18 S -0.14 -3.90 18.55 -107.50 -1.99 -5.89 16 19 C -0.52 -15.68 10.04 30.94 0.31 -15.37 16 20 H 0.09 2.76 8.03 -52.49 -0.42 2.34 16 21 C 0.09 2.87 5.50 -17.43 -0.10 2.77 16 22 N -0.88 -27.53 13.97 55.49 0.78 -26.76 16 23 Si 0.86 22.61 27.74 -169.99 -4.72 17.90 16 24 H -0.27 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.23 -6.19 6.74 56.52 0.38 -5.81 16 26 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 27 C 0.53 5.49 7.63 -10.86 -0.08 5.41 16 28 O -0.51 -7.46 16.78 5.56 0.09 -7.37 16 29 H 0.10 0.87 7.84 -52.49 -0.41 0.46 16 30 H 0.10 0.64 8.06 -52.48 -0.42 0.22 16 31 H 0.11 0.65 8.06 -52.49 -0.42 0.23 16 32 H 0.09 0.87 7.58 -51.93 -0.39 0.48 16 33 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 36 H 0.09 0.39 8.04 -51.93 -0.42 -0.03 16 37 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 38 H 0.35 2.17 8.12 -39.29 -0.32 1.85 16 39 H 0.06 0.29 7.50 -51.93 -0.39 -0.10 16 40 H 0.06 0.36 8.13 -51.93 -0.42 -0.06 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.41 6.28 7.82 -40.82 -0.32 5.97 16 45 H 0.09 2.01 8.14 -51.91 -0.42 1.58 16 46 H 0.09 1.97 8.14 -51.92 -0.42 1.55 16 47 H 0.27 7.79 8.31 -40.82 -0.34 7.45 16 LS Contribution 404.75 15.07 6.10 6.10 Total: -1.00 -37.75 404.75 -8.64 -46.39 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -7.66 Total: 3.97 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: 0.05 Total: 0.85 kcal Atomic # 7 Polarization: -48.99 SS G_CDS: -0.61 Total: -49.60 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: 0.18 Total: -19.72 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -4.72 Total: 17.90 kcal Atomic # 16 Polarization: -3.90 SS G_CDS: -1.99 Total: -5.89 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -37.75 -8.64 -46.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731580423.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.278 kcal (2) G-P(sol) polarization free energy of solvation -37.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds