Wall clock time and date at job start Wed Apr 1 2020 00:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50694 * 120.00177 * 2 1 4 4 N 1.46505 * 109.47432 * 124.99796 * 3 2 1 5 5 C 1.46758 * 124.34988 * 90.00062 * 4 3 2 6 6 C 1.54476 * 105.47492 * 162.98515 * 5 4 3 7 7 C 1.54633 * 101.76296 * 25.41537 * 6 5 4 8 8 H 1.08997 * 110.48632 * 94.01478 * 7 6 5 9 9 N 1.46902 * 110.48329 * 216.52548 * 7 6 5 10 10 C 1.46906 * 110.99476 * 205.00212 * 9 7 6 11 11 H 1.08997 * 109.47271 * 324.99720 * 10 9 7 12 12 C 1.52998 * 109.47171 * 85.00323 * 10 9 7 13 13 C 1.53004 * 109.46512 * 204.99865 * 10 9 7 14 14 N 1.46500 * 109.47331 * 54.99982 * 13 10 9 15 15 C 1.34774 * 119.99961 * 179.97438 * 14 13 10 16 16 O 1.21281 * 120.00138 * 359.97438 * 15 14 13 17 17 C 1.50701 * 119.99741 * 180.02562 * 15 14 13 18 18 S 1.81005 * 109.47173 * 179.97438 * 17 15 14 19 19 C 1.76189 * 100.00097 * 179.97438 * 18 17 15 20 20 H 1.07999 * 120.00127 * 0.02562 * 19 18 17 21 21 C 1.38805 * 120.00013 * 180.02562 * 19 18 17 22 22 N 1.31633 * 120.00034 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 119.99929 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.47174 * 270.00277 * 23 21 19 25 25 H 1.48501 * 109.47062 * 30.00228 * 23 21 19 26 26 H 1.48490 * 109.46901 * 150.00205 * 23 21 19 27 27 C 1.34420 * 124.34696 * 270.00024 * 4 3 2 28 28 O 1.21282 * 124.94520 * 0.44368 * 27 4 3 29 29 H 1.08002 * 120.00071 * 0.02562 * 1 2 3 30 30 H 1.08004 * 120.00263 * 180.02562 * 1 2 3 31 31 H 1.08002 * 120.00071 * 179.97438 * 2 1 3 32 32 H 1.09001 * 109.47318 * 5.00076 * 3 2 1 33 33 H 1.09003 * 109.47366 * 244.99816 * 3 2 1 34 34 H 1.09003 * 110.24394 * 43.98264 * 5 4 3 35 35 H 1.09000 * 110.24504 * 281.98919 * 5 4 3 36 36 H 1.09000 * 110.96993 * 267.29737 * 6 5 4 37 37 H 1.09000 * 111.00010 * 143.54484 * 6 5 4 38 38 H 1.00902 * 111.00246 * 328.94791 * 9 7 6 39 39 H 1.09004 * 109.46648 * 299.99152 * 12 10 9 40 40 H 1.08997 * 109.47515 * 59.99546 * 12 10 9 41 41 H 1.09001 * 109.46962 * 180.02562 * 12 10 9 42 42 H 1.08997 * 109.47505 * 294.99574 * 13 10 9 43 43 H 1.09002 * 109.46765 * 175.00038 * 13 10 9 44 44 H 0.97002 * 119.99685 * 0.02562 * 14 13 10 45 45 H 1.09005 * 109.47318 * 59.99759 * 17 15 14 46 46 H 1.09002 * 109.47150 * 299.99724 * 17 15 14 47 47 H 0.97001 * 119.99662 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3319 1.1315 5 6 4.3791 0.8508 1.0761 6 6 5.0779 1.4636 2.3100 7 6 3.8860 1.6840 3.2701 8 1 3.7742 0.8325 3.9413 9 7 4.0675 2.9227 4.0388 10 6 3.3301 2.8671 5.3082 11 1 2.4018 2.3142 5.1653 12 6 4.1852 2.1640 6.3643 13 6 3.0104 4.2888 5.7748 14 7 2.2942 5.0014 4.7139 15 6 1.9073 6.2786 4.9025 16 8 2.1517 6.8378 5.9506 17 6 1.1701 7.0115 3.8114 18 16 0.7906 8.6929 4.3638 19 6 -0.0446 9.3025 2.9372 20 1 -0.1800 8.6640 2.0767 21 6 -0.5285 10.6033 2.9193 22 7 -1.1520 11.0589 1.8532 23 14 -0.2949 11.7074 4.4079 24 1 -1.4527 11.5534 5.3249 25 1 0.9525 11.3249 5.1170 26 1 -0.1989 13.1215 3.9651 27 6 2.6880 1.8004 2.3537 28 8 1.6086 2.2502 2.6753 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5401 -0.9353 0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3586 2.1316 0.0896 33 1 2.6213 1.4025 -0.9314 34 1 4.8611 1.1937 0.1605 35 1 4.4029 -0.2376 1.1308 36 1 5.5558 2.4101 2.0576 37 1 5.7989 0.7664 2.7369 38 1 5.0462 3.1100 4.1971 39 1 4.4130 1.1512 6.0319 40 1 5.1136 2.7170 6.5073 41 1 3.6380 2.1224 7.3061 42 1 3.9380 4.8137 6.0029 43 1 2.3877 4.2464 6.6685 44 1 2.0978 4.5538 3.8761 45 1 0.2425 6.4863 3.5835 46 1 1.7926 7.0541 2.9176 47 1 -1.4905 11.9678 1.8409 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731580423.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:18:41 Heat of formation + Delta-G solvation = -73.782641 kcal Electronic energy + Delta-G solvation = -27396.979946 eV Core-core repulsion = 23512.312097 eV Total energy + Delta-G solvation = -3884.667849 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.54022 -40.59209 -38.27711 -37.46168 -35.91550 -34.76193 -34.67334 -32.65299 -31.08370 -30.05213 -27.91247 -27.75289 -26.89502 -26.21051 -23.00929 -21.95911 -21.63827 -21.05442 -20.18257 -19.85706 -17.98202 -17.84705 -17.69675 -17.37453 -17.09288 -16.95165 -16.44809 -15.94331 -15.86237 -15.54452 -15.21118 -15.04737 -14.87691 -14.63325 -14.50693 -14.34750 -14.11793 -13.89476 -13.65583 -13.42078 -13.36286 -13.25472 -13.01956 -12.98883 -12.72313 -12.62570 -12.37782 -12.21501 -11.94565 -11.87636 -11.80204 -11.18384 -11.05629 -10.95756 -10.57692 -10.42468 -10.03547 -9.68945 -9.42240 -9.01672 -8.52901 -6.24360 0.96982 1.17015 1.31045 1.46109 1.55568 1.57924 1.60644 2.23029 2.24076 2.32281 2.70910 2.84783 3.10270 3.36784 3.61612 3.83974 3.88824 3.93592 4.08324 4.10862 4.13591 4.16831 4.21380 4.31232 4.38860 4.42026 4.48281 4.63996 4.72504 4.73409 4.77193 4.88704 4.92783 4.97569 5.00781 5.17640 5.25770 5.49637 5.56696 5.61039 5.69204 5.75951 5.89376 6.09139 6.18873 6.44933 6.52887 6.91390 7.20479 7.26710 8.60035 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011284 B = 0.002698 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2480.825743 B =10375.226387 C =12182.020944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.177 4.177 3 C 0.147 3.853 4 N -0.617 5.617 5 C 0.100 3.900 6 C -0.123 4.123 7 C 0.060 3.940 8 H 0.098 0.902 9 N -0.677 5.677 10 C 0.083 3.917 11 H 0.075 0.925 12 C -0.170 4.170 13 C 0.131 3.869 14 N -0.699 5.699 15 C 0.532 3.468 16 O -0.565 6.565 17 C -0.111 4.111 18 S -0.164 6.164 19 C -0.534 4.534 20 H 0.056 0.944 21 C 0.045 3.955 22 N -0.918 5.918 23 Si 0.918 3.082 24 H -0.261 1.261 25 H -0.236 1.236 26 H -0.255 1.255 27 C 0.508 3.492 28 O -0.568 6.568 29 H 0.084 0.916 30 H 0.112 0.888 31 H 0.128 0.872 32 H 0.058 0.942 33 H 0.111 0.889 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.124 0.876 38 H 0.365 0.635 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.061 0.939 44 H 0.413 0.587 45 H 0.100 0.900 46 H 0.105 0.895 47 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.988 -31.565 -0.968 36.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.196 4.196 3 C 0.025 3.975 4 N -0.351 5.351 5 C -0.022 4.022 6 C -0.161 4.161 7 C -0.053 4.053 8 H 0.116 0.884 9 N -0.312 5.312 10 C -0.027 4.027 11 H 0.093 0.907 12 C -0.229 4.229 13 C 0.007 3.993 14 N -0.352 5.352 15 C 0.317 3.683 16 O -0.445 6.445 17 C -0.262 4.262 18 S 0.063 5.937 19 C -0.681 4.681 20 H 0.075 0.925 21 C -0.160 4.160 22 N -0.555 5.555 23 Si 0.739 3.261 24 H -0.186 1.186 25 H -0.160 1.160 26 H -0.179 1.179 27 C 0.296 3.704 28 O -0.446 6.446 29 H 0.103 0.897 30 H 0.130 0.870 31 H 0.146 0.854 32 H 0.077 0.923 33 H 0.129 0.871 34 H 0.115 0.885 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.143 0.857 38 H 0.188 0.812 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.079 0.921 44 H 0.250 0.750 45 H 0.118 0.882 46 H 0.123 0.877 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 17.241 -29.953 0.422 34.563 hybrid contribution -0.709 -0.596 -1.136 1.466 sum 16.532 -30.549 -0.714 34.743 Atomic orbital electron populations 1.24049 0.96488 1.02289 0.99111 1.23349 0.96144 0.99040 1.01100 1.20529 0.92149 0.95412 0.89364 1.48378 1.14429 1.61761 1.10509 1.22354 0.79135 1.00253 1.00474 1.22901 0.95845 1.03931 0.93456 1.22191 0.94581 0.93271 0.95224 0.88439 1.60082 1.17467 1.34304 1.19316 1.21726 0.97970 0.93774 0.89210 0.90720 1.22347 1.00413 1.01190 0.98969 1.21475 0.96196 0.92190 0.89471 1.45708 1.57698 1.11384 1.20392 1.19868 0.78677 0.82488 0.87304 1.90653 1.57136 1.68015 1.28675 1.23241 1.03661 0.98022 1.01274 1.84521 1.74664 1.09914 1.24638 1.22472 1.42162 1.02106 1.01366 0.92528 1.25611 0.92983 0.98285 0.99127 1.70025 1.37224 1.18244 1.30050 0.85822 0.81404 0.79191 0.79664 1.18598 1.15960 1.17914 1.21536 0.89271 0.75716 0.83922 1.90690 1.28089 1.47025 1.78821 0.89708 0.86950 0.85417 0.92316 0.87071 0.88483 0.89012 0.88842 0.85747 0.81248 0.90485 0.90789 0.91463 0.91531 0.92079 0.75030 0.88195 0.87657 0.91260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.93 14.32 67.79 0.97 -1.96 16 2 C -0.18 -2.48 9.85 25.65 0.25 -2.22 16 3 C 0.15 2.22 6.37 85.63 0.55 2.77 16 4 N -0.62 -8.85 2.92 -822.33 -2.40 -11.25 16 5 C 0.10 0.49 7.35 86.83 0.64 1.13 16 6 C -0.12 -0.44 6.60 31.65 0.21 -0.23 16 7 C 0.06 0.68 3.02 44.91 0.14 0.81 16 8 H 0.10 0.86 7.20 -2.39 -0.02 0.84 16 9 N -0.68 -9.43 5.51 -469.49 -2.59 -12.01 16 10 C 0.08 1.36 2.55 44.91 0.11 1.48 16 11 H 0.07 1.53 7.40 -2.39 -0.02 1.52 16 12 C -0.17 -1.64 9.15 71.98 0.66 -0.98 16 13 C 0.13 3.18 5.37 86.38 0.46 3.64 16 14 N -0.70 -21.90 5.39 -463.06 -2.49 -24.40 16 15 C 0.53 21.56 7.85 87.66 0.69 22.25 16 16 O -0.57 -26.54 15.86 -3.03 -0.05 -26.58 16 17 C -0.11 -4.93 6.16 71.24 0.44 -4.49 16 18 S -0.16 -8.95 18.55 -56.49 -1.05 -10.00 16 19 C -0.53 -33.10 10.04 67.96 0.68 -32.41 16 20 H 0.06 3.74 8.03 -2.91 -0.02 3.71 16 21 C 0.05 2.77 5.50 84.86 0.47 3.24 16 22 N -0.92 -57.97 13.97 21.65 0.30 -57.67 16 23 Si 0.92 46.75 27.74 68.60 1.90 48.65 16 24 H -0.26 -12.97 7.11 99.48 0.71 -12.26 16 25 H -0.24 -11.98 6.74 99.48 0.67 -11.31 16 26 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 27 C 0.51 10.30 7.63 87.90 0.67 10.97 16 28 O -0.57 -17.30 16.78 -3.04 -0.05 -17.35 16 29 H 0.08 1.63 7.84 -2.91 -0.02 1.60 16 30 H 0.11 1.45 8.06 -2.91 -0.02 1.42 16 31 H 0.13 1.26 8.06 -2.91 -0.02 1.24 16 32 H 0.06 1.25 7.58 -2.39 -0.02 1.23 16 33 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.10 0.22 8.14 -2.39 -0.02 0.20 16 35 H 0.09 0.12 8.14 -2.39 -0.02 0.10 16 36 H 0.09 0.42 8.04 -2.39 -0.02 0.40 16 37 H 0.12 -0.30 8.14 -2.39 -0.02 -0.32 16 38 H 0.36 3.42 8.12 -89.69 -0.73 2.69 16 39 H 0.08 0.48 7.50 -2.38 -0.02 0.46 16 40 H 0.07 0.59 8.13 -2.39 -0.02 0.57 16 41 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.41 12.75 7.82 -92.71 -0.72 12.03 16 45 H 0.10 4.33 8.14 -2.39 -0.02 4.31 16 46 H 0.11 4.43 8.14 -2.39 -0.02 4.41 16 47 H 0.28 16.13 8.31 -92.71 -0.77 15.36 16 Total: -1.00 -84.83 404.75 0.00 -84.83 By element: Atomic # 1 Polarization: 22.31 SS G_CDS: -0.52 Total: 21.79 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: 6.93 Total: 3.99 kcal Atomic # 7 Polarization: -98.16 SS G_CDS: -7.18 Total: -105.34 kcal Atomic # 8 Polarization: -43.83 SS G_CDS: -0.10 Total: -43.93 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 1.90 Total: 48.65 kcal Atomic # 16 Polarization: -8.95 SS G_CDS: -1.05 Total: -10.00 kcal Total: -84.83 0.00 -84.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731580423.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.048 kcal (2) G-P(sol) polarization free energy of solvation -84.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds