Wall clock time and date at job start Wed Apr 1 2020 00:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50700 * 120.00081 * 2 1 4 4 N 1.46497 * 109.47439 * 124.99738 * 3 2 1 5 5 C 1.46765 * 124.35349 * 269.72777 * 4 3 2 6 6 C 1.54656 * 105.38162 * 162.85078 * 5 4 3 7 7 C 1.54631 * 101.68671 * 25.77033 * 6 5 4 8 8 H 1.09001 * 110.48824 * 216.30880 * 7 6 5 9 9 N 1.46896 * 110.59886 * 93.71668 * 7 6 5 10 10 C 1.46899 * 110.99921 * 90.87049 * 9 7 6 11 11 H 1.08998 * 109.47009 * 325.90995 * 10 9 7 12 12 C 1.53002 * 109.47313 * 85.90805 * 10 9 7 13 13 C 1.52995 * 109.47213 * 205.91090 * 10 9 7 14 14 N 1.46504 * 109.47230 * 54.99683 * 13 10 9 15 15 C 1.34777 * 119.99723 * 180.02562 * 14 13 10 16 16 O 1.21283 * 120.00596 * 359.97438 * 15 14 13 17 17 C 1.50704 * 119.99455 * 180.02562 * 15 14 13 18 18 S 1.81005 * 109.46858 * 179.97438 * 17 15 14 19 19 C 1.76198 * 99.99886 * 179.97438 * 18 17 15 20 20 H 1.08000 * 120.00251 * 0.02562 * 19 18 17 21 21 C 1.38797 * 120.00092 * 180.02562 * 19 18 17 22 22 N 1.31635 * 120.00077 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00186 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47006 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47342 * 119.99777 * 23 21 19 26 26 H 1.48499 * 109.46952 * 239.99870 * 23 21 19 27 27 C 1.34423 * 124.34876 * 90.02387 * 4 3 2 28 28 O 1.21292 * 124.94014 * 0.43667 * 27 4 3 29 29 H 1.08000 * 120.00132 * 180.02562 * 1 2 3 30 30 H 1.08003 * 120.00033 * 359.97438 * 1 2 3 31 31 H 1.07997 * 120.00170 * 179.97438 * 2 1 3 32 32 H 1.09012 * 109.47067 * 5.00173 * 3 2 1 33 33 H 1.08999 * 109.47336 * 245.00313 * 3 2 1 34 34 H 1.08993 * 110.24466 * 281.98228 * 5 4 3 35 35 H 1.08999 * 110.24264 * 43.98427 * 5 4 3 36 36 H 1.09000 * 111.19954 * 267.59532 * 6 5 4 37 37 H 1.08999 * 110.85395 * 143.79327 * 6 5 4 38 38 H 1.00902 * 110.99664 * 214.82038 * 9 7 6 39 39 H 1.09003 * 109.47059 * 184.29585 * 12 10 9 40 40 H 1.08999 * 109.47230 * 304.29720 * 12 10 9 41 41 H 1.08997 * 109.47030 * 64.30213 * 12 10 9 42 42 H 1.09007 * 109.47495 * 174.99785 * 13 10 9 43 43 H 1.09003 * 109.47237 * 294.99784 * 13 10 9 44 44 H 0.96996 * 119.99672 * 0.02562 * 14 13 10 45 45 H 1.09002 * 109.47056 * 299.99109 * 17 15 14 46 46 H 1.08994 * 109.47362 * 59.99669 * 17 15 14 47 47 H 0.96996 * 120.00203 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.6618 1.8487 2.4644 6 6 3.7493 1.2817 3.4066 7 6 4.9270 1.0615 2.4291 8 1 5.4821 0.1625 2.6968 9 7 5.8168 2.2303 2.4204 10 6 6.8860 2.0852 3.4173 11 1 6.5032 1.5481 4.2851 12 6 8.0504 1.3031 2.8063 13 6 7.3725 3.4702 3.8485 14 7 6.2346 4.2616 4.3232 15 6 6.4254 5.5235 4.7563 16 8 7.5390 6.0039 4.7535 17 6 5.2549 6.3374 5.2450 18 16 5.8305 7.9759 5.7551 19 6 4.3032 8.6917 6.2646 20 1 3.3902 8.1182 6.2013 21 6 4.2734 9.9927 6.7475 22 7 5.3861 10.6916 6.8253 23 14 2.6543 10.7513 7.2884 24 1 1.5593 9.7655 7.1028 25 1 2.7403 11.1324 8.7211 26 1 2.3761 11.9593 6.4707 27 6 4.2628 0.8917 1.0805 28 8 4.7978 0.4265 0.0964 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3585 2.1317 0.0896 33 1 2.6213 1.4026 -0.9314 34 1 2.6897 2.9383 2.4642 35 1 1.6772 1.4958 2.7712 36 1 3.4317 0.3395 3.8532 37 1 4.0120 2.0070 4.1767 38 1 6.1995 2.3865 1.4999 39 1 8.8107 1.1294 3.5678 40 1 7.6878 0.3465 2.4300 41 1 8.4823 1.8762 1.9859 42 1 8.1023 3.3653 4.6515 43 1 7.8360 3.9731 2.9997 44 1 5.3440 3.8773 4.3257 45 1 4.5247 6.4420 4.4425 46 1 4.7921 5.8346 6.0942 47 1 5.3654 11.6006 7.1630 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731580425.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:18:44 Heat of formation + Delta-G solvation = -47.033859 kcal Electronic energy + Delta-G solvation = -27080.345828 eV Core-core repulsion = 23196.837893 eV Total energy + Delta-G solvation = -3883.507934 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.01749 -39.16421 -37.49784 -36.84023 -35.16999 -33.65753 -32.40714 -31.88979 -29.92421 -29.15689 -27.07553 -26.24766 -25.77787 -25.29797 -22.36361 -21.00029 -20.77773 -20.16306 -19.64635 -17.81405 -17.44305 -17.25795 -16.40515 -16.13865 -15.81614 -15.55603 -15.40864 -14.79001 -14.74207 -14.58030 -14.26520 -13.92030 -13.83710 -13.63494 -13.44339 -13.14298 -13.01893 -12.84998 -12.74921 -12.56003 -12.49053 -12.11025 -11.96814 -11.85459 -11.66797 -11.53196 -11.21119 -11.06050 -10.99528 -10.73993 -10.20853 -9.93372 -9.78071 -9.32546 -9.15489 -9.05747 -8.95968 -8.72575 -8.18926 -6.46580 -6.19723 -3.89526 1.63755 2.07982 2.72831 3.09985 3.20644 3.22637 3.29791 3.34999 3.67151 3.82067 3.84357 4.09919 4.22432 4.41792 4.47975 4.56634 4.61091 4.67204 4.80682 4.93617 4.94352 5.01760 5.15403 5.18322 5.20334 5.23348 5.32767 5.40905 5.42078 5.47883 5.54137 5.65141 5.71461 5.77619 5.90834 5.95699 5.96604 6.09469 6.19118 6.27211 6.43991 6.68933 6.72337 6.87905 7.61706 7.74563 7.88531 8.37398 8.73933 9.25669 10.87757 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010816 B = 0.002455 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2588.102135 B =11403.875719 C =13590.740497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.173 4.173 3 C 0.150 3.850 4 N -0.607 5.607 5 C 0.105 3.895 6 C -0.125 4.125 7 C 0.054 3.946 8 H 0.083 0.917 9 N -0.661 5.661 10 C 0.072 3.928 11 H 0.088 0.912 12 C -0.181 4.181 13 C 0.135 3.865 14 N -0.725 5.725 15 C 0.529 3.471 16 O -0.524 6.524 17 C -0.151 4.151 18 S -0.062 6.062 19 C -0.533 4.533 20 H 0.073 0.927 21 C 0.072 3.928 22 N -0.868 5.868 23 Si 0.918 3.082 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 C 0.518 3.482 28 O -0.531 6.531 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.109 0.891 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.099 0.901 38 H 0.353 0.647 39 H 0.068 0.932 40 H 0.059 0.941 41 H 0.064 0.936 42 H 0.070 0.930 43 H 0.065 0.935 44 H 0.400 0.600 45 H 0.088 0.912 46 H 0.087 0.913 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.893 -25.243 -10.087 28.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.192 4.192 3 C 0.029 3.971 4 N -0.340 5.340 5 C -0.017 4.017 6 C -0.164 4.164 7 C -0.059 4.059 8 H 0.101 0.899 9 N -0.295 5.295 10 C -0.038 4.038 11 H 0.106 0.894 12 C -0.240 4.240 13 C 0.010 3.990 14 N -0.379 5.379 15 C 0.315 3.685 16 O -0.398 6.398 17 C -0.302 4.302 18 S 0.164 5.836 19 C -0.681 4.681 20 H 0.091 0.909 21 C -0.137 4.137 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 C 0.304 3.696 28 O -0.407 6.407 29 H 0.118 0.882 30 H 0.118 0.882 31 H 0.127 0.873 32 H 0.105 0.895 33 H 0.109 0.891 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.117 0.883 38 H 0.173 0.827 39 H 0.087 0.913 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.088 0.912 43 H 0.083 0.917 44 H 0.235 0.765 45 H 0.107 0.893 46 H 0.106 0.894 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.115 -24.136 -10.227 26.708 hybrid contribution -2.286 -0.971 -0.122 2.487 sum -7.401 -25.108 -10.348 28.147 Atomic orbital electron populations 1.23915 0.95643 1.02265 0.99578 1.23312 0.96186 0.99004 1.00683 1.20503 0.91785 0.95532 0.89266 1.48218 1.12253 1.61191 1.12351 1.22165 0.99010 0.99760 0.80775 1.22750 0.93587 1.02592 0.97447 1.22271 0.95104 0.94680 0.93801 0.89893 1.60629 1.20947 1.36561 1.11346 1.21940 0.90634 0.96045 0.95188 0.89364 1.22423 0.99090 1.00509 1.02018 1.21227 0.89114 0.89394 0.99297 1.45782 1.11086 1.14102 1.66975 1.20282 0.90419 0.81107 0.76657 1.90698 1.25354 1.70257 1.53535 1.23502 0.99360 1.03609 1.03688 1.85414 1.13424 1.02418 1.82318 1.22904 0.94251 1.01577 1.49406 0.90927 1.24997 0.97454 0.96058 0.95170 1.70032 1.26365 1.10377 1.43543 0.86125 0.82088 0.78988 0.78327 1.19628 1.20610 1.20617 1.20864 0.82167 0.76766 0.89795 1.90746 1.68071 1.45129 1.36708 0.88179 0.88200 0.87306 0.89507 0.89111 0.89993 0.90406 0.89861 0.88269 0.82697 0.91253 0.92178 0.91701 0.91187 0.91685 0.76489 0.89340 0.89436 0.92281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.94 14.32 29.01 0.42 -0.52 16 2 C -0.17 -1.16 9.85 -36.03 -0.35 -1.51 16 3 C 0.15 1.07 6.37 -5.20 -0.03 1.04 16 4 N -0.61 -4.77 2.92 -173.67 -0.51 -5.28 16 5 C 0.11 0.62 7.36 -3.03 -0.02 0.59 16 6 C -0.13 -0.66 6.90 -25.00 -0.17 -0.83 16 7 C 0.05 0.39 2.99 -67.73 -0.20 0.19 16 8 H 0.08 0.56 7.27 -51.93 -0.38 0.19 16 9 N -0.66 -5.10 5.53 -99.76 -0.55 -5.65 16 10 C 0.07 0.53 2.61 -67.71 -0.18 0.36 16 11 H 0.09 0.57 7.84 -51.93 -0.41 0.16 16 12 C -0.18 -1.23 9.16 37.16 0.34 -0.89 16 13 C 0.13 1.47 5.37 -4.04 -0.02 1.45 16 14 N -0.72 -9.30 5.39 -60.29 -0.32 -9.62 16 15 C 0.53 9.77 7.85 -10.98 -0.09 9.68 16 16 O -0.52 -11.92 15.86 5.55 0.09 -11.83 16 17 C -0.15 -3.00 6.16 36.01 0.22 -2.78 16 18 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 19 C -0.53 -15.09 9.50 30.94 0.29 -14.79 16 20 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 21 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 22 N -0.87 -26.15 13.22 55.49 0.73 -25.41 16 23 Si 0.92 21.26 29.55 -169.99 -5.02 16.24 16 24 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 C 0.52 5.06 7.33 -10.86 -0.08 4.98 16 28 O -0.53 -7.16 17.59 5.55 0.10 -7.06 16 29 H 0.10 0.46 8.06 -52.49 -0.42 0.03 16 30 H 0.10 0.44 7.84 -52.48 -0.41 0.03 16 31 H 0.11 0.83 8.06 -52.49 -0.42 0.41 16 32 H 0.09 0.48 7.79 -51.92 -0.40 0.07 16 33 H 0.09 0.74 7.92 -51.93 -0.41 0.33 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.10 0.49 7.71 -51.93 -0.40 0.09 16 38 H 0.35 3.14 8.12 -39.29 -0.32 2.82 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.06 0.40 7.54 -51.93 -0.39 0.01 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.40 4.13 7.77 -40.82 -0.32 3.81 16 45 H 0.09 1.64 8.14 -51.92 -0.42 1.21 16 46 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 47 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 408.52 15.07 6.16 6.16 Total: -1.00 -36.18 408.52 -9.15 -45.33 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -7.64 Total: 2.12 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: 0.03 Total: -1.08 kcal Atomic # 7 Polarization: -45.31 SS G_CDS: -0.65 Total: -45.96 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: 0.19 Total: -18.89 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -36.18 -9.15 -45.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731580425.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.705 kcal (2) G-P(sol) polarization free energy of solvation -36.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds