Wall clock time and date at job start Wed Apr 1 2020 00:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50700 * 120.00081 * 2 1 4 4 N 1.46497 * 109.47439 * 124.99738 * 3 2 1 5 5 C 1.46765 * 124.35349 * 269.72777 * 4 3 2 6 6 C 1.54656 * 105.38162 * 162.85078 * 5 4 3 7 7 C 1.54631 * 101.68671 * 25.77033 * 6 5 4 8 8 H 1.09001 * 110.48824 * 216.30880 * 7 6 5 9 9 N 1.46896 * 110.59886 * 93.71668 * 7 6 5 10 10 C 1.46899 * 110.99921 * 90.87049 * 9 7 6 11 11 H 1.08998 * 109.47009 * 325.90995 * 10 9 7 12 12 C 1.53002 * 109.47313 * 85.90805 * 10 9 7 13 13 C 1.52995 * 109.47213 * 205.91090 * 10 9 7 14 14 N 1.46504 * 109.47230 * 54.99683 * 13 10 9 15 15 C 1.34777 * 119.99723 * 180.02562 * 14 13 10 16 16 O 1.21283 * 120.00596 * 359.97438 * 15 14 13 17 17 C 1.50704 * 119.99455 * 180.02562 * 15 14 13 18 18 S 1.81005 * 109.46858 * 179.97438 * 17 15 14 19 19 C 1.76198 * 99.99886 * 179.97438 * 18 17 15 20 20 H 1.08000 * 120.00251 * 0.02562 * 19 18 17 21 21 C 1.38797 * 120.00092 * 180.02562 * 19 18 17 22 22 N 1.31635 * 120.00077 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00186 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47006 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47342 * 119.99777 * 23 21 19 26 26 H 1.48499 * 109.46952 * 239.99870 * 23 21 19 27 27 C 1.34423 * 124.34876 * 90.02387 * 4 3 2 28 28 O 1.21292 * 124.94014 * 0.43667 * 27 4 3 29 29 H 1.08000 * 120.00132 * 180.02562 * 1 2 3 30 30 H 1.08003 * 120.00033 * 359.97438 * 1 2 3 31 31 H 1.07997 * 120.00170 * 179.97438 * 2 1 3 32 32 H 1.09012 * 109.47067 * 5.00173 * 3 2 1 33 33 H 1.08999 * 109.47336 * 245.00313 * 3 2 1 34 34 H 1.08993 * 110.24466 * 281.98228 * 5 4 3 35 35 H 1.08999 * 110.24264 * 43.98427 * 5 4 3 36 36 H 1.09000 * 111.19954 * 267.59532 * 6 5 4 37 37 H 1.08999 * 110.85395 * 143.79327 * 6 5 4 38 38 H 1.00902 * 110.99664 * 214.82038 * 9 7 6 39 39 H 1.09003 * 109.47059 * 184.29585 * 12 10 9 40 40 H 1.08999 * 109.47230 * 304.29720 * 12 10 9 41 41 H 1.08997 * 109.47030 * 64.30213 * 12 10 9 42 42 H 1.09007 * 109.47495 * 174.99785 * 13 10 9 43 43 H 1.09003 * 109.47237 * 294.99784 * 13 10 9 44 44 H 0.96996 * 119.99672 * 0.02562 * 14 13 10 45 45 H 1.09002 * 109.47056 * 299.99109 * 17 15 14 46 46 H 1.08994 * 109.47362 * 59.99669 * 17 15 14 47 47 H 0.96996 * 120.00203 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.6618 1.8487 2.4644 6 6 3.7493 1.2817 3.4066 7 6 4.9270 1.0615 2.4291 8 1 5.4821 0.1625 2.6968 9 7 5.8168 2.2303 2.4204 10 6 6.8860 2.0852 3.4173 11 1 6.5032 1.5481 4.2851 12 6 8.0504 1.3031 2.8063 13 6 7.3725 3.4702 3.8485 14 7 6.2346 4.2616 4.3232 15 6 6.4254 5.5235 4.7563 16 8 7.5390 6.0039 4.7535 17 6 5.2549 6.3374 5.2450 18 16 5.8305 7.9759 5.7551 19 6 4.3032 8.6917 6.2646 20 1 3.3902 8.1182 6.2013 21 6 4.2734 9.9927 6.7475 22 7 5.3861 10.6916 6.8253 23 14 2.6543 10.7513 7.2884 24 1 1.5593 9.7655 7.1028 25 1 2.7403 11.1324 8.7211 26 1 2.3761 11.9593 6.4707 27 6 4.2628 0.8917 1.0805 28 8 4.7978 0.4265 0.0964 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3585 2.1317 0.0896 33 1 2.6213 1.4026 -0.9314 34 1 2.6897 2.9383 2.4642 35 1 1.6772 1.4958 2.7712 36 1 3.4317 0.3395 3.8532 37 1 4.0120 2.0070 4.1767 38 1 6.1995 2.3865 1.4999 39 1 8.8107 1.1294 3.5678 40 1 7.6878 0.3465 2.4300 41 1 8.4823 1.8762 1.9859 42 1 8.1023 3.3653 4.6515 43 1 7.8360 3.9731 2.9997 44 1 5.3440 3.8773 4.3257 45 1 4.5247 6.4420 4.4425 46 1 4.7921 5.8346 6.0942 47 1 5.3654 11.6006 7.1630 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731580425.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:18:43 Heat of formation + Delta-G solvation = -73.846252 kcal Electronic energy + Delta-G solvation = -27081.508500 eV Core-core repulsion = 23196.837893 eV Total energy + Delta-G solvation = -3884.670607 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.66451 -40.50734 -38.34163 -37.55487 -35.84066 -34.69537 -34.53581 -32.58936 -30.99424 -30.09959 -27.71116 -27.65354 -26.85749 -26.42789 -22.96377 -21.65477 -21.53061 -21.32888 -20.28392 -19.74474 -18.04888 -17.95515 -17.64258 -17.33578 -16.84503 -16.67189 -16.41417 -16.18512 -15.84035 -15.67651 -15.21502 -14.89601 -14.62516 -14.52591 -14.41688 -14.12354 -14.04239 -13.90959 -13.64641 -13.35645 -13.17117 -13.11368 -13.09221 -12.88258 -12.69661 -12.54140 -12.46475 -12.29747 -12.04898 -11.88591 -11.65851 -11.12372 -10.92551 -10.85957 -10.44219 -10.20664 -9.95980 -9.77631 -9.57722 -8.61654 -8.30869 -6.08147 1.15751 1.31962 1.36968 1.44217 1.51981 1.62544 1.73797 2.16904 2.30458 2.42190 3.03392 3.07126 3.23740 3.38857 3.59216 3.85467 3.94782 3.99122 4.02257 4.10666 4.17141 4.29091 4.36128 4.38778 4.43338 4.50424 4.58726 4.65760 4.68630 4.76539 4.82018 4.84947 4.92899 4.99034 5.08102 5.18464 5.23709 5.44007 5.46214 5.56856 5.63359 5.76060 5.85502 6.07972 6.14159 6.24159 6.68921 7.05462 7.10662 7.39627 8.78563 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010816 B = 0.002455 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2588.102135 B =11403.875719 C =13590.740497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.190 4.190 3 C 0.147 3.853 4 N -0.604 5.604 5 C 0.101 3.899 6 C -0.117 4.117 7 C 0.060 3.940 8 H 0.090 0.910 9 N -0.664 5.664 10 C 0.086 3.914 11 H 0.110 0.890 12 C -0.177 4.177 13 C 0.134 3.866 14 N -0.695 5.695 15 C 0.530 3.470 16 O -0.574 6.574 17 C -0.125 4.125 18 S -0.157 6.157 19 C -0.541 4.541 20 H 0.084 0.916 21 C 0.011 3.989 22 N -0.913 5.913 23 Si 0.999 3.001 24 H -0.254 1.254 25 H -0.275 1.275 26 H -0.276 1.276 27 C 0.507 3.493 28 O -0.579 6.579 29 H 0.109 0.891 30 H 0.114 0.886 31 H 0.093 0.907 32 H 0.106 0.894 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.109 0.891 38 H 0.345 0.655 39 H 0.077 0.923 40 H 0.064 0.936 41 H 0.055 0.945 42 H 0.068 0.932 43 H 0.049 0.951 44 H 0.417 0.583 45 H 0.107 0.893 46 H 0.111 0.889 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.825 -26.769 -9.188 29.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.209 4.209 3 C 0.026 3.974 4 N -0.336 5.336 5 C -0.020 4.020 6 C -0.156 4.156 7 C -0.052 4.052 8 H 0.108 0.892 9 N -0.297 5.297 10 C -0.024 4.024 11 H 0.128 0.872 12 C -0.236 4.236 13 C 0.009 3.991 14 N -0.349 5.349 15 C 0.316 3.684 16 O -0.453 6.453 17 C -0.277 4.277 18 S 0.070 5.930 19 C -0.689 4.689 20 H 0.102 0.898 21 C -0.194 4.194 22 N -0.550 5.550 23 Si 0.821 3.179 24 H -0.177 1.177 25 H -0.201 1.201 26 H -0.202 1.202 27 C 0.295 3.705 28 O -0.459 6.459 29 H 0.127 0.873 30 H 0.132 0.868 31 H 0.111 0.889 32 H 0.124 0.876 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.114 0.886 36 H 0.119 0.881 37 H 0.127 0.873 38 H 0.164 0.836 39 H 0.096 0.904 40 H 0.083 0.917 41 H 0.074 0.926 42 H 0.086 0.914 43 H 0.068 0.932 44 H 0.255 0.745 45 H 0.126 0.874 46 H 0.129 0.871 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.106 -25.715 -9.321 28.528 hybrid contribution -1.402 -0.620 -0.486 1.608 sum -9.508 -26.335 -9.807 29.667 Atomic orbital electron populations 1.24094 0.95028 1.03366 0.97092 1.23148 0.96656 0.98075 1.03009 1.20570 0.91809 0.96587 0.88449 1.48399 1.11819 1.60040 1.13339 1.22348 1.00201 0.99771 0.79712 1.22801 0.92112 1.03752 0.96904 1.22284 0.95524 0.94647 0.92787 0.89201 1.60656 1.21040 1.37026 1.10960 1.21817 0.90911 0.93835 0.95848 0.87211 1.22377 0.98985 1.00344 1.01926 1.21369 0.88417 0.90700 0.98612 1.45515 1.12668 1.12147 1.64569 1.20076 0.89094 0.82474 0.76806 1.90689 1.26932 1.71676 1.56042 1.23338 1.00096 0.99181 1.05052 1.85631 1.15761 1.08470 1.83169 1.23232 0.94306 1.02106 1.49220 0.89759 1.26144 1.01611 0.96616 0.95013 1.70201 1.29180 1.10859 1.44742 0.84901 0.77139 0.78102 0.77772 1.17734 1.20068 1.20187 1.21357 0.82784 0.76221 0.90166 1.90713 1.69193 1.47437 1.38542 0.87278 0.86805 0.88898 0.87589 0.91058 0.90037 0.88620 0.88125 0.87259 0.83576 0.90449 0.91716 0.92563 0.91377 0.93238 0.74523 0.87435 0.87087 0.92118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.36 14.32 67.78 0.97 -0.39 16 2 C -0.19 -2.38 9.85 25.65 0.25 -2.13 16 3 C 0.15 1.99 6.37 85.63 0.55 2.54 16 4 N -0.60 -8.76 2.92 -821.95 -2.40 -11.16 16 5 C 0.10 0.90 7.36 86.89 0.64 1.53 16 6 C -0.12 -0.83 6.90 31.71 0.22 -0.61 16 7 C 0.06 0.73 2.99 44.91 0.13 0.87 16 8 H 0.09 1.00 7.27 -2.39 -0.02 0.99 16 9 N -0.66 -9.02 5.53 -469.52 -2.60 -11.62 16 10 C 0.09 1.07 2.61 44.91 0.12 1.19 16 11 H 0.11 0.99 7.84 -2.39 -0.02 0.97 16 12 C -0.18 -2.12 9.16 71.98 0.66 -1.46 16 13 C 0.13 2.72 5.37 86.38 0.46 3.18 16 14 N -0.70 -16.36 5.39 -463.04 -2.50 -18.85 16 15 C 0.53 19.06 7.85 87.66 0.69 19.75 16 16 O -0.57 -26.54 15.86 -3.04 -0.05 -26.59 16 17 C -0.13 -4.82 6.16 71.24 0.44 -4.38 16 18 S -0.16 -8.68 20.57 -56.49 -1.16 -9.85 16 19 C -0.54 -30.43 9.50 67.95 0.65 -29.78 16 20 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 21 C 0.01 0.60 5.49 84.86 0.47 1.06 16 22 N -0.91 -55.99 13.22 21.65 0.29 -55.70 16 23 Si 1.00 43.03 29.55 68.60 2.03 45.06 16 24 H -0.25 -10.08 7.11 99.48 0.71 -9.37 16 25 H -0.28 -11.53 7.11 99.48 0.71 -10.83 16 26 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 27 C 0.51 9.63 7.33 87.90 0.64 10.28 16 28 O -0.58 -16.11 17.59 -3.07 -0.05 -16.16 16 29 H 0.11 0.75 8.06 -2.91 -0.02 0.73 16 30 H 0.11 0.67 7.84 -2.91 -0.02 0.65 16 31 H 0.09 1.45 8.06 -2.91 -0.02 1.43 16 32 H 0.11 0.98 7.79 -2.38 -0.02 0.96 16 33 H 0.07 1.23 7.92 -2.39 -0.02 1.21 16 34 H 0.08 0.76 8.14 -2.39 -0.02 0.75 16 35 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 37 H 0.11 0.59 7.71 -2.39 -0.02 0.57 16 38 H 0.35 5.89 8.12 -89.69 -0.73 5.16 16 39 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.06 0.75 7.54 -2.39 -0.02 0.73 16 41 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 43 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.42 7.15 7.77 -92.71 -0.72 6.43 16 45 H 0.11 3.73 8.14 -2.39 -0.02 3.71 16 46 H 0.11 3.75 8.14 -2.40 -0.02 3.73 16 47 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -82.25 408.52 -0.03 -82.28 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: -0.48 Total: 20.93 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: 6.88 Total: 1.66 kcal Atomic # 7 Polarization: -90.13 SS G_CDS: -7.20 Total: -97.33 kcal Atomic # 8 Polarization: -42.65 SS G_CDS: -0.10 Total: -42.75 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Atomic # 16 Polarization: -8.68 SS G_CDS: -1.16 Total: -9.85 kcal Total: -82.25 -0.03 -82.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731580425.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.432 kcal (2) G-P(sol) polarization free energy of solvation -82.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds