Wall clock time and date at job start Wed Apr 1 2020 00:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50704 * 120.00008 * 2 1 4 4 N 1.46503 * 109.46426 * 125.00423 * 3 2 1 5 5 C 1.46759 * 124.34829 * 90.00875 * 4 3 2 6 6 C 1.54490 * 105.47231 * 162.97862 * 5 4 3 7 7 C 1.54633 * 101.76434 * 25.40975 * 6 5 4 8 8 H 1.09003 * 110.48413 * 94.01155 * 7 6 5 9 9 N 1.46898 * 110.48163 * 216.52375 * 7 6 5 10 10 C 1.46893 * 111.00129 * 274.44276 * 9 7 6 11 11 H 1.09004 * 109.47185 * 34.26762 * 10 9 7 12 12 C 1.53001 * 109.47610 * 274.26841 * 10 9 7 13 13 C 1.52997 * 109.47165 * 154.26664 * 10 9 7 14 14 N 1.46497 * 109.47343 * 305.00238 * 13 10 9 15 15 C 1.34780 * 120.00451 * 179.97438 * 14 13 10 16 16 O 1.21284 * 119.99698 * 0.02562 * 15 14 13 17 17 C 1.50700 * 120.00130 * 180.02562 * 15 14 13 18 18 S 1.80998 * 109.47089 * 180.02562 * 17 15 14 19 19 C 1.76195 * 100.00247 * 179.97438 * 18 17 15 20 20 H 1.08007 * 119.99817 * 0.02562 * 19 18 17 21 21 C 1.38799 * 120.00294 * 179.97438 * 19 18 17 22 22 N 1.31629 * 119.99530 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00107 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47034 * 60.00099 * 23 21 19 25 25 H 1.48500 * 109.46939 * 180.02562 * 23 21 19 26 26 H 1.48510 * 109.46838 * 300.00517 * 23 21 19 27 27 C 1.34417 * 124.34871 * 269.99808 * 4 3 2 28 28 O 1.21285 * 124.94096 * 0.44293 * 27 4 3 29 29 H 1.08000 * 120.00078 * 179.97438 * 1 2 3 30 30 H 1.08001 * 120.00090 * 359.97438 * 1 2 3 31 31 H 1.08005 * 120.00110 * 180.02562 * 2 1 3 32 32 H 1.09001 * 109.46799 * 5.00710 * 3 2 1 33 33 H 1.08995 * 109.47010 * 245.00283 * 3 2 1 34 34 H 1.08994 * 110.25144 * 43.97650 * 5 4 3 35 35 H 1.09003 * 110.31998 * 282.01043 * 5 4 3 36 36 H 1.09002 * 110.96751 * 267.29080 * 6 5 4 37 37 H 1.08997 * 110.99765 * 143.54694 * 6 5 4 38 38 H 1.00901 * 110.99093 * 150.49455 * 9 7 6 39 39 H 1.09005 * 109.46859 * 55.90551 * 12 10 9 40 40 H 1.08998 * 109.47518 * 175.90953 * 12 10 9 41 41 H 1.08999 * 109.47203 * 295.91181 * 12 10 9 42 42 H 1.09003 * 109.47242 * 65.00033 * 13 10 9 43 43 H 1.09001 * 109.47477 * 184.99926 * 13 10 9 44 44 H 0.97002 * 120.00035 * 359.97438 * 14 13 10 45 45 H 1.08998 * 109.46651 * 299.99473 * 17 15 14 46 46 H 1.08992 * 109.47156 * 59.99951 * 17 15 14 47 47 H 0.97002 * 119.99379 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3317 1.1314 5 6 4.3792 0.8507 1.0758 6 6 5.0781 1.4634 2.3099 7 6 3.8862 1.6838 3.2701 8 1 3.7744 0.8321 3.9412 9 7 4.0678 2.9223 4.0389 10 6 4.8804 2.6826 5.2389 11 1 5.6291 1.9200 5.0244 12 6 3.9784 2.2052 6.3789 13 6 5.5779 3.9808 5.6501 14 7 6.3478 4.5013 4.5177 15 6 7.0491 5.6449 4.6483 16 8 7.0432 6.2427 5.7035 17 6 7.8406 6.1806 3.4832 18 16 8.6659 7.7163 3.9696 19 6 9.4930 8.1094 2.4643 20 1 9.3904 7.4610 1.6066 21 6 10.2754 9.2527 2.3803 22 7 10.3999 10.0431 3.4255 23 14 11.1516 9.6698 0.7842 24 1 10.1511 9.8393 -0.3000 25 1 11.9164 10.9313 0.9544 26 1 12.0843 8.5699 0.4295 27 6 2.6882 1.8000 2.3538 28 8 1.6087 2.2499 2.6754 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3585 2.1316 0.0897 33 1 2.6212 1.4026 -0.9314 34 1 4.8612 1.1937 0.1604 35 1 4.4044 -0.2377 1.1298 36 1 5.5560 2.4100 2.0576 37 1 5.7991 0.7662 2.7366 38 1 3.1777 3.3314 4.2807 39 1 3.4264 1.3211 6.0595 40 1 4.5896 1.9581 7.2468 41 1 3.2763 2.9962 6.6423 42 1 4.8307 4.7156 5.9499 43 1 6.2492 3.7836 6.4859 44 1 6.3529 4.0230 3.6738 45 1 8.5881 5.4461 3.1833 46 1 7.1690 6.3776 2.6476 47 1 10.9470 10.8420 3.3669 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731580427.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:18:46 Heat of formation + Delta-G solvation = -47.188187 kcal Electronic energy + Delta-G solvation = -26941.488115 eV Core-core repulsion = 23057.973489 eV Total energy + Delta-G solvation = -3883.514626 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.00033 -39.13608 -37.45798 -36.85830 -35.19086 -33.66796 -32.38724 -31.87585 -29.91206 -29.15115 -27.20934 -26.12590 -25.67028 -25.25739 -22.52119 -20.98979 -20.56830 -20.12756 -19.75417 -17.82012 -17.28785 -17.21647 -16.65581 -16.11419 -15.86357 -15.47264 -15.20655 -14.83336 -14.76781 -14.61927 -14.16583 -14.11404 -13.91591 -13.70569 -13.34265 -13.14815 -13.01343 -12.83909 -12.78879 -12.48674 -12.37664 -12.18647 -11.94431 -11.82220 -11.57601 -11.55566 -11.17209 -11.01014 -11.00134 -10.73395 -10.30619 -9.83726 -9.77847 -9.29784 -9.19209 -9.02265 -8.92942 -8.68959 -8.17508 -6.44301 -6.17378 -3.87183 1.64926 2.14698 2.69680 3.12269 3.23702 3.25999 3.30226 3.35727 3.66771 3.81231 3.87153 4.11947 4.24739 4.40463 4.53573 4.55773 4.59734 4.65507 4.74152 4.83943 4.90875 4.96490 5.06160 5.17421 5.22358 5.25855 5.31557 5.37706 5.41876 5.44256 5.58946 5.66232 5.74871 5.78302 5.93940 5.98766 6.02444 6.09114 6.21699 6.22182 6.50648 6.67596 6.77332 6.96146 7.63151 7.75992 7.91970 8.39116 8.77011 9.27630 10.89984 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012262 B = 0.002258 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2282.927925 B =12397.734057 C =14119.175136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.182 4.182 3 C 0.153 3.847 4 N -0.613 5.613 5 C 0.102 3.898 6 C -0.126 4.126 7 C 0.054 3.946 8 H 0.084 0.916 9 N -0.664 5.664 10 C 0.072 3.928 11 H 0.087 0.913 12 C -0.181 4.181 13 C 0.135 3.865 14 N -0.725 5.725 15 C 0.530 3.470 16 O -0.524 6.524 17 C -0.151 4.151 18 S -0.061 6.061 19 C -0.535 4.535 20 H 0.071 0.929 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.918 3.082 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C 0.523 3.477 28 O -0.524 6.524 29 H 0.099 0.901 30 H 0.100 0.900 31 H 0.110 0.890 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.357 0.643 39 H 0.057 0.943 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.069 0.931 44 H 0.401 0.599 45 H 0.087 0.913 46 H 0.088 0.912 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.694 -26.128 -4.962 30.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.201 4.201 3 C 0.031 3.969 4 N -0.347 5.347 5 C -0.021 4.021 6 C -0.164 4.164 7 C -0.059 4.059 8 H 0.101 0.899 9 N -0.298 5.298 10 C -0.038 4.038 11 H 0.105 0.895 12 C -0.240 4.240 13 C 0.010 3.990 14 N -0.379 5.379 15 C 0.316 3.684 16 O -0.399 6.399 17 C -0.302 4.302 18 S 0.165 5.835 19 C -0.683 4.683 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.200 1.200 25 H -0.209 1.209 26 H -0.200 1.200 27 C 0.309 3.691 28 O -0.400 6.400 29 H 0.118 0.882 30 H 0.118 0.882 31 H 0.128 0.872 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.102 0.898 35 H 0.089 0.911 36 H 0.116 0.884 37 H 0.108 0.892 38 H 0.179 0.821 39 H 0.076 0.924 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.088 0.912 44 H 0.235 0.765 45 H 0.106 0.894 46 H 0.107 0.893 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.722 -24.487 -3.386 29.296 hybrid contribution -0.104 -1.315 -2.169 2.539 sum -15.826 -25.802 -5.555 30.774 Atomic orbital electron populations 1.23940 0.95894 1.02267 0.98360 1.23259 0.96365 0.98707 1.01795 1.20501 0.91967 0.96033 0.88378 1.48165 1.13290 1.62128 1.11093 1.22148 0.80872 0.99032 1.00095 1.22792 0.96732 1.03153 0.93755 1.22206 0.94301 0.94208 0.95231 0.89886 1.60625 1.23154 1.23503 1.22563 1.21913 0.95540 0.97521 0.88833 0.89491 1.22424 1.00441 1.01768 0.99388 1.21219 0.94643 0.93816 0.89359 1.45774 1.50475 1.26059 1.15589 1.20276 0.78820 0.79861 0.89493 1.90694 1.62489 1.57722 1.29003 1.23504 1.02017 1.05411 0.99266 1.85389 1.58959 1.19963 1.19150 1.22831 1.34519 1.12318 0.98621 0.91037 1.24991 0.96024 0.95187 0.97444 1.70014 1.37799 1.13379 1.29124 0.86235 0.79343 0.77809 0.82158 1.19970 1.20855 1.19978 1.20748 0.88781 0.76454 0.83109 1.90736 1.25858 1.45485 1.77886 0.88220 0.88181 0.87242 0.89449 0.89262 0.89818 0.91088 0.88386 0.89183 0.82148 0.92413 0.91269 0.91639 0.91687 0.91234 0.76453 0.89448 0.89332 0.92186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.06 14.32 29.02 0.42 -0.65 16 2 C -0.18 -1.15 9.85 -36.02 -0.35 -1.51 16 3 C 0.15 1.03 6.37 -5.19 -0.03 1.00 16 4 N -0.61 -4.61 2.91 -173.78 -0.51 -5.11 16 5 C 0.10 0.48 7.35 -3.12 -0.02 0.45 16 6 C -0.13 -0.64 6.66 -25.09 -0.17 -0.81 16 7 C 0.05 0.39 3.02 -67.72 -0.20 0.18 16 8 H 0.08 0.52 7.24 -51.93 -0.38 0.15 16 9 N -0.66 -5.65 5.50 -99.75 -0.55 -6.20 16 10 C 0.07 0.56 2.60 -67.72 -0.18 0.38 16 11 H 0.09 0.57 7.70 -51.93 -0.40 0.17 16 12 C -0.18 -1.24 9.16 37.16 0.34 -0.90 16 13 C 0.13 1.54 5.37 -4.04 -0.02 1.52 16 14 N -0.72 -9.78 5.39 -60.29 -0.32 -10.10 16 15 C 0.53 10.08 7.85 -10.98 -0.09 9.99 16 16 O -0.52 -12.18 15.86 5.55 0.09 -12.09 16 17 C -0.15 -3.10 6.16 36.01 0.22 -2.88 16 18 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 19 C -0.53 -15.35 9.50 30.94 0.29 -15.05 16 20 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 21 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -26.39 13.22 55.49 0.73 -25.65 16 23 Si 0.92 21.51 29.55 -169.99 -5.02 16.48 16 24 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 27 C 0.52 5.19 7.61 -10.86 -0.08 5.11 16 28 O -0.52 -7.21 17.09 5.55 0.09 -7.11 16 29 H 0.10 0.51 8.06 -52.49 -0.42 0.09 16 30 H 0.10 0.66 7.84 -52.49 -0.41 0.25 16 31 H 0.11 0.59 8.06 -52.48 -0.42 0.17 16 32 H 0.09 0.71 7.58 -51.93 -0.39 0.32 16 33 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 36 H 0.10 0.60 8.09 -51.93 -0.42 0.18 16 37 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.36 3.58 7.84 -39.29 -0.31 3.28 16 39 H 0.06 0.37 7.45 -51.93 -0.39 -0.02 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.40 4.46 8.14 -40.82 -0.33 4.13 16 45 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 46 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 47 H 0.27 7.59 8.31 -40.82 -0.34 7.26 16 LS Contribution 408.25 15.07 6.15 6.15 Total: -1.00 -36.91 408.25 -9.17 -46.07 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -7.65 Total: 2.62 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: 0.03 Total: -1.16 kcal Atomic # 7 Polarization: -46.42 SS G_CDS: -0.65 Total: -47.07 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: 0.18 Total: -19.20 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -36.91 -9.17 -46.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731580427.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.115 kcal (2) G-P(sol) polarization free energy of solvation -36.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds