Wall clock time and date at job start Wed Apr 1 2020 00:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50704 * 120.00008 * 2 1 4 4 N 1.46503 * 109.46426 * 125.00423 * 3 2 1 5 5 C 1.46759 * 124.34829 * 90.00875 * 4 3 2 6 6 C 1.54490 * 105.47231 * 162.97862 * 5 4 3 7 7 C 1.54633 * 101.76434 * 25.40975 * 6 5 4 8 8 H 1.09003 * 110.48413 * 94.01155 * 7 6 5 9 9 N 1.46898 * 110.48163 * 216.52375 * 7 6 5 10 10 C 1.46893 * 111.00129 * 274.44276 * 9 7 6 11 11 H 1.09004 * 109.47185 * 34.26762 * 10 9 7 12 12 C 1.53001 * 109.47610 * 274.26841 * 10 9 7 13 13 C 1.52997 * 109.47165 * 154.26664 * 10 9 7 14 14 N 1.46497 * 109.47343 * 305.00238 * 13 10 9 15 15 C 1.34780 * 120.00451 * 179.97438 * 14 13 10 16 16 O 1.21284 * 119.99698 * 0.02562 * 15 14 13 17 17 C 1.50700 * 120.00130 * 180.02562 * 15 14 13 18 18 S 1.80998 * 109.47089 * 180.02562 * 17 15 14 19 19 C 1.76195 * 100.00247 * 179.97438 * 18 17 15 20 20 H 1.08007 * 119.99817 * 0.02562 * 19 18 17 21 21 C 1.38799 * 120.00294 * 179.97438 * 19 18 17 22 22 N 1.31629 * 119.99530 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00107 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47034 * 60.00099 * 23 21 19 25 25 H 1.48500 * 109.46939 * 180.02562 * 23 21 19 26 26 H 1.48510 * 109.46838 * 300.00517 * 23 21 19 27 27 C 1.34417 * 124.34871 * 269.99808 * 4 3 2 28 28 O 1.21285 * 124.94096 * 0.44293 * 27 4 3 29 29 H 1.08000 * 120.00078 * 179.97438 * 1 2 3 30 30 H 1.08001 * 120.00090 * 359.97438 * 1 2 3 31 31 H 1.08005 * 120.00110 * 180.02562 * 2 1 3 32 32 H 1.09001 * 109.46799 * 5.00710 * 3 2 1 33 33 H 1.08995 * 109.47010 * 245.00283 * 3 2 1 34 34 H 1.08994 * 110.25144 * 43.97650 * 5 4 3 35 35 H 1.09003 * 110.31998 * 282.01043 * 5 4 3 36 36 H 1.09002 * 110.96751 * 267.29080 * 6 5 4 37 37 H 1.08997 * 110.99765 * 143.54694 * 6 5 4 38 38 H 1.00901 * 110.99093 * 150.49455 * 9 7 6 39 39 H 1.09005 * 109.46859 * 55.90551 * 12 10 9 40 40 H 1.08998 * 109.47518 * 175.90953 * 12 10 9 41 41 H 1.08999 * 109.47203 * 295.91181 * 12 10 9 42 42 H 1.09003 * 109.47242 * 65.00033 * 13 10 9 43 43 H 1.09001 * 109.47477 * 184.99926 * 13 10 9 44 44 H 0.97002 * 120.00035 * 359.97438 * 14 13 10 45 45 H 1.08998 * 109.46651 * 299.99473 * 17 15 14 46 46 H 1.08992 * 109.47156 * 59.99951 * 17 15 14 47 47 H 0.97002 * 119.99379 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3317 1.1314 5 6 4.3792 0.8507 1.0758 6 6 5.0781 1.4634 2.3099 7 6 3.8862 1.6838 3.2701 8 1 3.7744 0.8321 3.9412 9 7 4.0678 2.9223 4.0389 10 6 4.8804 2.6826 5.2389 11 1 5.6291 1.9200 5.0244 12 6 3.9784 2.2052 6.3789 13 6 5.5779 3.9808 5.6501 14 7 6.3478 4.5013 4.5177 15 6 7.0491 5.6449 4.6483 16 8 7.0432 6.2427 5.7035 17 6 7.8406 6.1806 3.4832 18 16 8.6659 7.7163 3.9696 19 6 9.4930 8.1094 2.4643 20 1 9.3904 7.4610 1.6066 21 6 10.2754 9.2527 2.3803 22 7 10.3999 10.0431 3.4255 23 14 11.1516 9.6698 0.7842 24 1 10.1511 9.8393 -0.3000 25 1 11.9164 10.9313 0.9544 26 1 12.0843 8.5699 0.4295 27 6 2.6882 1.8000 2.3538 28 8 1.6087 2.2499 2.6754 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3585 2.1316 0.0897 33 1 2.6212 1.4026 -0.9314 34 1 4.8612 1.1937 0.1604 35 1 4.4044 -0.2377 1.1298 36 1 5.5560 2.4100 2.0576 37 1 5.7991 0.7662 2.7366 38 1 3.1777 3.3314 4.2807 39 1 3.4264 1.3211 6.0595 40 1 4.5896 1.9581 7.2468 41 1 3.2763 2.9962 6.6423 42 1 4.8307 4.7156 5.9499 43 1 6.2492 3.7836 6.4859 44 1 6.3529 4.0230 3.6738 45 1 8.5881 5.4461 3.1833 46 1 7.1690 6.3776 2.6476 47 1 10.9470 10.8420 3.3669 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731580427.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:18:46 Heat of formation + Delta-G solvation = -74.793764 kcal Electronic energy + Delta-G solvation = -26942.685183 eV Core-core repulsion = 23057.973489 eV Total energy + Delta-G solvation = -3884.711694 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.62295 -40.52264 -38.31009 -37.55686 -35.84783 -34.73844 -34.54928 -32.59485 -30.98881 -30.11097 -27.77938 -27.69987 -26.81032 -26.24237 -23.08079 -21.67703 -21.54740 -21.10978 -20.36219 -19.76303 -18.00505 -17.84290 -17.60939 -17.43213 -16.87549 -16.84088 -16.50478 -15.94867 -15.84659 -15.54269 -15.32063 -14.90986 -14.71980 -14.56918 -14.44055 -14.30524 -13.99558 -13.80208 -13.56565 -13.48478 -13.18262 -13.13683 -12.89457 -12.83867 -12.74444 -12.59881 -12.42307 -12.33194 -12.00014 -11.83807 -11.70538 -11.10195 -10.97029 -10.88570 -10.38646 -10.23572 -9.97329 -9.77221 -9.55329 -8.63172 -8.31568 -6.09365 1.15246 1.30285 1.44761 1.45847 1.49819 1.59945 1.71531 2.16610 2.29856 2.41023 3.02191 3.07182 3.27034 3.37548 3.66001 3.86792 3.91930 3.98972 4.07813 4.12834 4.16541 4.22713 4.31986 4.36047 4.37367 4.49321 4.55988 4.65545 4.69985 4.74996 4.80970 4.85982 4.92539 4.96693 5.06722 5.23782 5.25684 5.44216 5.50353 5.55882 5.60393 5.72857 5.92452 6.10077 6.18658 6.22484 6.66624 7.08745 7.09331 7.37327 8.77376 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012262 B = 0.002258 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2282.927925 B =12397.734057 C =14119.175136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.182 4.182 3 C 0.147 3.853 4 N -0.611 5.611 5 C 0.099 3.901 6 C -0.120 4.120 7 C 0.058 3.942 8 H 0.099 0.901 9 N -0.674 5.674 10 C 0.086 3.914 11 H 0.112 0.888 12 C -0.177 4.177 13 C 0.132 3.868 14 N -0.696 5.696 15 C 0.529 3.471 16 O -0.574 6.574 17 C -0.126 4.126 18 S -0.154 6.154 19 C -0.545 4.545 20 H 0.083 0.917 21 C 0.011 3.989 22 N -0.912 5.912 23 Si 0.999 3.001 24 H -0.263 1.263 25 H -0.280 1.280 26 H -0.260 1.260 27 C 0.508 3.492 28 O -0.576 6.576 29 H 0.112 0.888 30 H 0.090 0.910 31 H 0.125 0.875 32 H 0.064 0.936 33 H 0.112 0.888 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.117 0.883 38 H 0.346 0.654 39 H 0.067 0.933 40 H 0.077 0.923 41 H 0.053 0.947 42 H 0.047 0.953 43 H 0.069 0.931 44 H 0.416 0.584 45 H 0.111 0.889 46 H 0.104 0.896 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.714 -29.080 -7.107 33.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.200 4.200 3 C 0.025 3.975 4 N -0.343 5.343 5 C -0.023 4.023 6 C -0.159 4.159 7 C -0.054 4.054 8 H 0.116 0.884 9 N -0.307 5.307 10 C -0.024 4.024 11 H 0.130 0.870 12 C -0.236 4.236 13 C 0.007 3.993 14 N -0.349 5.349 15 C 0.315 3.685 16 O -0.453 6.453 17 C -0.278 4.278 18 S 0.073 5.927 19 C -0.693 4.693 20 H 0.101 0.899 21 C -0.194 4.194 22 N -0.548 5.548 23 Si 0.821 3.179 24 H -0.187 1.187 25 H -0.205 1.205 26 H -0.184 1.184 27 C 0.296 3.704 28 O -0.455 6.455 29 H 0.130 0.870 30 H 0.108 0.892 31 H 0.143 0.857 32 H 0.083 0.917 33 H 0.130 0.870 34 H 0.116 0.884 35 H 0.112 0.888 36 H 0.108 0.892 37 H 0.136 0.864 38 H 0.166 0.834 39 H 0.086 0.914 40 H 0.096 0.904 41 H 0.072 0.928 42 H 0.065 0.935 43 H 0.087 0.913 44 H 0.254 0.746 45 H 0.129 0.871 46 H 0.123 0.877 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.737 -27.521 -5.583 31.713 hybrid contribution -0.511 -0.506 -1.503 1.666 sum -15.248 -28.027 -7.086 32.684 Atomic orbital electron populations 1.24061 0.96277 1.02483 0.98746 1.23349 0.96329 0.98945 1.01423 1.20590 0.92086 0.95627 0.89162 1.48346 1.14530 1.61004 1.10401 1.22407 0.78990 1.00326 1.00604 1.22853 0.96189 1.03549 0.93262 1.22278 0.94075 0.93904 0.95183 0.88397 1.60639 1.22658 1.24504 1.22907 1.21802 0.95817 0.95731 0.89028 0.87027 1.22379 1.00180 1.01694 0.99343 1.21396 0.94098 0.95128 0.88633 1.45528 1.48473 1.23978 1.16938 1.20071 0.79194 0.80970 0.88257 1.90684 1.64471 1.59569 1.30563 1.23339 1.02376 1.01876 1.00164 1.85593 1.60614 1.25383 1.21143 1.23173 1.34576 1.12862 0.98661 0.89858 1.26153 0.96771 0.94883 1.01544 1.70189 1.38825 1.14003 1.31821 0.84998 0.78162 0.77821 0.76965 1.18745 1.20524 1.18438 1.21313 0.88851 0.75990 0.84244 1.90702 1.27967 1.47911 1.78965 0.86954 0.89187 0.85701 0.91738 0.86956 0.88385 0.88845 0.89191 0.86427 0.83394 0.91410 0.90371 0.92796 0.93499 0.91251 0.74598 0.87060 0.87736 0.92067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.19 14.32 67.78 0.97 -1.22 16 2 C -0.18 -2.06 9.85 25.65 0.25 -1.81 16 3 C 0.15 1.83 6.37 85.63 0.55 2.38 16 4 N -0.61 -8.07 2.91 -822.31 -2.40 -10.47 16 5 C 0.10 0.56 7.35 86.84 0.64 1.20 16 6 C -0.12 -0.76 6.66 31.66 0.21 -0.55 16 7 C 0.06 0.70 3.02 44.91 0.14 0.83 16 8 H 0.10 0.91 7.24 -2.39 -0.02 0.89 16 9 N -0.67 -10.33 5.50 -469.52 -2.58 -12.91 16 10 C 0.09 1.13 2.60 44.92 0.12 1.25 16 11 H 0.11 0.99 7.70 -2.38 -0.02 0.98 16 12 C -0.18 -2.09 9.16 71.98 0.66 -1.43 16 13 C 0.13 2.85 5.37 86.38 0.46 3.32 16 14 N -0.70 -17.57 5.39 -463.06 -2.49 -20.07 16 15 C 0.53 19.87 7.85 87.66 0.69 20.56 16 16 O -0.57 -27.22 15.86 -3.04 -0.05 -27.27 16 17 C -0.13 -5.06 6.16 71.24 0.44 -4.62 16 18 S -0.15 -8.69 20.57 -56.49 -1.16 -9.85 16 19 C -0.54 -31.25 9.50 67.95 0.65 -30.61 16 20 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 21 C 0.01 0.63 5.49 84.86 0.47 1.10 16 22 N -0.91 -56.49 13.22 21.65 0.29 -56.20 16 23 Si 1.00 43.62 29.55 68.60 2.03 45.64 16 24 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 25 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 26 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 27 C 0.51 9.65 7.61 87.90 0.67 10.32 16 28 O -0.58 -16.28 17.09 -3.05 -0.05 -16.34 16 29 H 0.11 1.05 8.06 -2.91 -0.02 1.03 16 30 H 0.09 1.26 7.84 -2.91 -0.02 1.24 16 31 H 0.13 1.03 8.06 -2.91 -0.02 1.00 16 32 H 0.06 1.10 7.58 -2.39 -0.02 1.08 16 33 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 35 H 0.09 0.18 8.14 -2.39 -0.02 0.17 16 36 H 0.09 0.76 8.09 -2.39 -0.02 0.74 16 37 H 0.12 0.16 8.14 -2.39 -0.02 0.14 16 38 H 0.35 6.85 7.84 -89.69 -0.70 6.14 16 39 H 0.07 0.70 7.45 -2.38 -0.02 0.68 16 40 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.42 8.03 8.14 -92.71 -0.75 7.28 16 45 H 0.11 3.92 8.14 -2.40 -0.02 3.90 16 46 H 0.10 3.85 8.14 -2.40 -0.02 3.83 16 47 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -84.46 408.25 -0.01 -84.46 By element: Atomic # 1 Polarization: 22.77 SS G_CDS: -0.48 Total: 22.29 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: 6.90 Total: 0.72 kcal Atomic # 7 Polarization: -92.46 SS G_CDS: -7.19 Total: -99.65 kcal Atomic # 8 Polarization: -43.51 SS G_CDS: -0.10 Total: -43.61 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 16 Polarization: -8.69 SS G_CDS: -1.16 Total: -9.85 kcal Total: -84.46 -0.01 -84.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731580427.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.671 kcal (2) G-P(sol) polarization free energy of solvation -84.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds