Wall clock time and date at job start Wed Apr 1 2020 00:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50700 * 120.00313 * 2 1 4 4 N 1.46506 * 109.47138 * 124.99828 * 3 2 1 5 5 C 1.34770 * 119.99955 * 180.02562 * 4 3 2 6 6 O 1.21277 * 120.00452 * 0.02562 * 5 4 3 7 7 C 1.50707 * 119.99645 * 179.97438 * 5 4 3 8 8 H 1.08994 * 109.47201 * 299.99901 * 7 5 4 9 9 C 1.52999 * 109.46899 * 60.00445 * 7 5 4 10 10 N 1.46903 * 109.46632 * 180.02562 * 7 5 4 11 11 C 1.47947 * 111.00474 * 70.45978 * 10 7 5 12 12 C 1.53939 * 86.30652 * 137.63406 * 11 10 7 13 13 C 1.52993 * 113.73738 * 221.86948 * 12 11 10 14 14 N 1.46501 * 109.47167 * 185.00317 * 13 12 11 15 15 C 1.34776 * 120.00064 * 180.02562 * 14 13 12 16 16 O 1.21283 * 119.99725 * 359.97438 * 15 14 13 17 17 C 1.50703 * 120.00216 * 179.97438 * 15 14 13 18 18 S 1.81001 * 109.47172 * 179.97438 * 17 15 14 19 19 C 1.76197 * 99.99571 * 180.02562 * 18 17 15 20 20 H 1.08000 * 120.00621 * 359.97438 * 19 18 17 21 21 C 1.38800 * 119.99736 * 179.97438 * 19 18 17 22 22 N 1.31633 * 120.00512 * 179.97438 * 21 19 18 23 23 Si 1.86806 * 120.00146 * 0.02562 * 21 19 18 24 24 H 1.48502 * 109.47033 * 89.99846 * 23 21 19 25 25 H 1.48500 * 109.47056 * 209.99914 * 23 21 19 26 26 H 1.48496 * 109.46630 * 330.00044 * 23 21 19 27 27 C 1.48309 * 111.10297 * 169.71386 * 10 7 5 28 28 H 1.08002 * 120.00095 * 359.97438 * 1 2 3 29 29 H 1.08003 * 119.99944 * 179.97438 * 1 2 3 30 30 H 1.08002 * 120.00095 * 180.02562 * 2 1 3 31 31 H 1.09002 * 109.46650 * 5.00427 * 3 2 1 32 32 H 1.08994 * 109.47317 * 244.99772 * 3 2 1 33 33 H 0.97008 * 119.99589 * 0.02562 * 4 3 2 34 34 H 1.08995 * 109.47240 * 64.09287 * 9 7 5 35 35 H 1.09002 * 109.46936 * 184.08800 * 9 7 5 36 36 H 1.08997 * 109.47295 * 304.08851 * 9 7 5 37 37 H 1.09007 * 113.76101 * 23.26148 * 11 10 7 38 38 H 1.09001 * 113.76261 * 252.01121 * 11 10 7 39 39 H 1.09000 * 113.72909 * 90.58407 * 12 11 10 40 40 H 1.09007 * 109.46734 * 304.99484 * 13 12 11 41 41 H 1.08996 * 109.47595 * 64.99191 * 13 12 11 42 42 H 0.96995 * 119.99710 * 359.97438 * 14 13 12 43 43 H 1.09000 * 109.46661 * 299.99672 * 17 15 14 44 44 H 1.08995 * 109.46769 * 59.99390 * 17 15 14 45 45 H 0.96998 * 120.00997 * 179.97438 * 22 21 19 46 46 H 1.09003 * 113.75972 * 108.13608 * 27 10 7 47 47 H 1.08995 * 113.85951 * 336.78100 * 27 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1315 5 6 3.7783 2.4089 1.3335 6 8 3.7139 3.3562 0.5790 7 6 4.7348 2.4366 2.4978 8 1 4.1767 2.3389 3.4289 9 6 5.7246 1.2766 2.3723 10 7 5.4686 3.7092 2.4984 11 6 4.5801 4.8334 2.8666 12 6 5.7473 5.3421 3.7317 13 6 5.3148 5.8691 5.1013 14 7 6.4741 6.4358 5.7949 15 6 6.3308 6.9629 7.0271 16 8 5.2421 6.9684 7.5614 17 6 7.5235 7.5453 7.7408 18 16 7.0116 8.1689 9.3611 19 6 8.5550 8.7749 9.9571 20 1 9.4412 8.6898 9.3456 21 6 8.6321 9.3618 11.2125 22 7 9.7851 9.8141 11.6581 23 14 7.0996 9.5084 12.2707 24 1 6.9659 8.2968 13.1188 25 1 7.2093 10.7095 13.1370 26 1 5.9054 9.6355 11.3972 27 6 6.2360 3.8825 3.7556 28 1 -0.5400 0.9353 0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3585 2.1316 0.0896 32 1 2.6213 1.4025 -0.9313 33 1 3.0450 0.5743 1.7352 34 1 6.3328 1.4131 1.4782 35 1 6.3698 1.2530 3.2505 36 1 5.1763 0.3375 2.2989 37 1 3.7054 4.5315 3.4428 38 1 4.3334 5.4898 2.0320 39 1 6.4191 6.0212 3.2066 40 1 4.5565 6.6413 4.9705 41 1 4.9021 5.0511 5.6917 42 1 7.3448 6.4311 5.3677 43 1 8.2816 6.7731 7.8713 44 1 7.9361 8.3635 7.1507 45 1 9.8389 10.2246 12.5353 46 1 7.3137 3.7781 3.6302 47 1 5.8473 3.3030 4.5929 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732122840.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:39 Heat of formation + Delta-G solvation = -17.289845 kcal Electronic energy + Delta-G solvation = -26060.789403 eV Core-core repulsion = 22178.571266 eV Total energy + Delta-G solvation = -3882.218137 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.11147 -39.62459 -38.90620 -36.26649 -34.91662 -33.74808 -32.66810 -32.43415 -30.17833 -28.14032 -27.19712 -26.35094 -25.63161 -24.89248 -22.85481 -21.06276 -20.69857 -20.11298 -19.85094 -17.94856 -17.60116 -17.07848 -16.40595 -16.39281 -16.11137 -16.03582 -15.34769 -15.08257 -14.93067 -14.81177 -14.59468 -14.15017 -13.75236 -13.67510 -13.50844 -13.22437 -13.07834 -12.97858 -12.79378 -12.70240 -12.53803 -12.25934 -11.85921 -11.78285 -11.50457 -11.30984 -11.22511 -11.00859 -10.90687 -10.59449 -10.46896 -9.98425 -9.85628 -9.54586 -9.52418 -9.19375 -9.01410 -8.94852 -8.49799 -6.91533 -6.28620 -4.00382 1.44945 2.22983 2.73245 2.76661 2.97973 3.29606 3.33810 3.48010 3.50789 3.64162 4.08614 4.13611 4.20494 4.33403 4.40532 4.44564 4.50155 4.56111 4.71825 4.81198 4.93892 4.96012 5.00274 5.10453 5.11924 5.16115 5.21027 5.24123 5.28779 5.34618 5.45937 5.50832 5.59161 5.69734 5.78028 5.82223 5.88700 5.89778 5.94409 6.02412 6.06861 6.49978 6.54726 7.01195 7.61476 7.79954 7.94385 8.42013 8.49356 9.17599 10.80609 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.029082 B = 0.001549 C = 0.001517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.556970 B =18067.803016 C =18456.346605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.179 4.179 3 C 0.147 3.853 4 N -0.731 5.731 5 C 0.519 3.481 6 O -0.519 6.519 7 C 0.029 3.971 8 H 0.074 0.926 9 C -0.140 4.140 10 N -0.456 5.456 11 C 0.022 3.978 12 C -0.128 4.128 13 C 0.131 3.869 14 N -0.735 5.735 15 C 0.530 3.470 16 O -0.521 6.521 17 C -0.124 4.124 18 S -0.143 6.143 19 C -0.522 4.522 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.881 5.881 23 Si 0.856 3.144 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C 0.007 3.993 28 H 0.101 0.899 29 H 0.104 0.896 30 H 0.116 0.884 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.401 0.599 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.098 0.902 39 H 0.109 0.891 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.400 0.600 43 H 0.097 0.903 44 H 0.098 0.902 45 H 0.271 0.729 46 H 0.094 0.906 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.233 -22.232 -24.500 35.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.198 4.198 3 C 0.024 3.976 4 N -0.385 5.385 5 C 0.304 3.696 6 O -0.393 6.393 7 C -0.084 4.084 8 H 0.092 0.908 9 C -0.198 4.198 10 N -0.179 5.179 11 C -0.107 4.107 12 C -0.147 4.147 13 C 0.006 3.994 14 N -0.390 5.390 15 C 0.316 3.684 16 O -0.396 6.396 17 C -0.275 4.275 18 S 0.084 5.916 19 C -0.669 4.669 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.517 5.517 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 C -0.121 4.121 28 H 0.119 0.881 29 H 0.122 0.878 30 H 0.134 0.866 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.235 0.765 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.117 0.883 39 H 0.127 0.873 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.235 0.765 43 H 0.115 0.885 44 H 0.116 0.884 45 H 0.081 0.919 46 H 0.113 0.887 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -14.672 -21.448 -24.675 35.835 hybrid contribution 0.774 -0.486 0.794 1.211 sum -13.897 -21.934 -23.881 35.278 Atomic orbital electron populations 1.24016 0.95799 1.02570 0.97732 1.22994 0.96257 0.98052 1.02447 1.20396 0.91759 0.95600 0.89807 1.45999 1.41277 1.20177 1.31052 1.20463 0.80451 0.82283 0.86377 1.90723 1.67102 1.35006 1.46441 1.22238 0.95203 0.94551 0.96388 0.90831 1.21741 0.98903 0.95223 1.03929 1.68657 1.15819 1.00515 1.32901 1.23855 0.94577 0.93770 0.98497 1.23268 0.99003 0.96841 0.95601 1.21298 0.88985 0.98380 0.90739 1.45947 1.12066 1.62979 1.17968 1.20294 0.90337 0.77118 0.80672 1.90699 1.27480 1.55746 1.65669 1.23279 0.98825 1.03713 1.01654 1.84785 1.17149 1.76971 1.12742 1.22322 0.93555 1.45175 1.05863 0.89377 1.24709 0.96362 0.93518 0.96665 1.69936 1.24256 1.38220 1.19301 0.86737 0.84589 0.78688 0.81853 1.19231 1.19935 1.15928 1.24183 1.00964 0.95510 0.91491 0.88093 0.87770 0.86649 0.91058 0.90602 0.76510 0.90979 0.91149 0.91781 0.91249 0.88332 0.87262 0.91159 0.91633 0.76546 0.88493 0.88421 0.91945 0.88716 0.90693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.56 14.32 29.02 0.42 -0.14 16 2 C -0.18 -0.67 9.63 -36.02 -0.35 -1.02 16 3 C 0.15 0.84 6.11 -5.19 -0.03 0.81 16 4 N -0.73 -4.22 5.42 -61.47 -0.33 -4.56 16 5 C 0.52 4.53 6.96 -10.99 -0.08 4.45 16 6 O -0.52 -6.64 15.53 5.56 0.09 -6.55 16 7 C 0.03 0.20 2.07 -68.86 -0.14 0.06 16 8 H 0.07 0.44 7.70 -51.93 -0.40 0.04 16 9 C -0.14 -0.73 9.13 37.16 0.34 -0.39 16 10 N -0.46 -3.96 5.67 -230.61 -1.31 -5.27 16 11 C 0.02 0.20 6.30 -2.77 -0.02 0.18 16 12 C -0.13 -1.03 3.94 -89.68 -0.35 -1.39 16 13 C 0.13 1.37 5.53 -4.04 -0.02 1.35 16 14 N -0.74 -8.94 5.56 -60.29 -0.33 -9.27 16 15 C 0.53 9.24 7.85 -10.98 -0.09 9.16 16 16 O -0.52 -11.17 15.86 5.55 0.09 -11.08 16 17 C -0.12 -2.37 6.16 36.01 0.22 -2.15 16 18 S -0.14 -3.62 18.55 -107.50 -1.99 -5.61 16 19 C -0.52 -15.01 10.04 30.94 0.31 -14.70 16 20 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 21 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 22 N -0.88 -26.56 13.97 55.49 0.78 -25.78 16 23 Si 0.86 21.77 27.74 -169.99 -4.72 17.06 16 24 H -0.27 -6.71 7.11 56.52 0.40 -6.30 16 25 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.24 -5.98 6.74 56.52 0.38 -5.60 16 27 C 0.01 0.05 6.73 -2.57 -0.02 0.03 16 28 H 0.10 0.34 7.84 -52.49 -0.41 -0.07 16 29 H 0.10 0.24 8.06 -52.48 -0.42 -0.18 16 30 H 0.12 0.30 8.06 -52.49 -0.42 -0.12 16 31 H 0.07 0.48 7.79 -51.93 -0.40 0.07 16 32 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.40 1.29 7.83 -40.82 -0.32 0.97 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.33 7.66 -51.93 -0.40 -0.07 16 36 H 0.06 0.20 7.45 -51.93 -0.39 -0.18 16 37 H 0.07 0.58 7.74 -51.93 -0.40 0.18 16 38 H 0.10 1.00 8.08 -51.93 -0.42 0.58 16 39 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 41 H 0.07 0.73 7.84 -51.93 -0.41 0.32 16 42 H 0.40 3.74 8.47 -40.82 -0.35 3.39 16 43 H 0.10 1.71 8.14 -51.92 -0.42 1.29 16 44 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 45 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 46 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 47 H 0.07 0.51 7.55 -51.93 -0.39 0.12 16 LS Contribution 404.92 15.07 6.10 6.10 Total: -1.00 -36.72 404.92 -9.20 -45.92 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -7.67 Total: 0.06 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: 0.10 Total: -1.03 kcal Atomic # 7 Polarization: -43.67 SS G_CDS: -1.20 Total: -44.87 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: 0.17 Total: -17.64 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.72 Total: 17.06 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.61 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -36.72 -9.20 -45.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732122840.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.632 kcal (2) G-P(sol) polarization free energy of solvation -36.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds