Wall clock time and date at job start Wed Apr 1 2020 00:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50700 * 120.00313 * 2 1 4 4 N 1.46506 * 109.47138 * 124.99828 * 3 2 1 5 5 C 1.34770 * 119.99955 * 180.02562 * 4 3 2 6 6 O 1.21277 * 120.00452 * 0.02562 * 5 4 3 7 7 C 1.50707 * 119.99645 * 179.97438 * 5 4 3 8 8 H 1.08994 * 109.47201 * 299.99901 * 7 5 4 9 9 C 1.52999 * 109.46899 * 60.00445 * 7 5 4 10 10 N 1.46903 * 109.46632 * 180.02562 * 7 5 4 11 11 C 1.47947 * 111.00474 * 70.45978 * 10 7 5 12 12 C 1.53939 * 86.30652 * 137.63406 * 11 10 7 13 13 C 1.52993 * 113.73738 * 221.86948 * 12 11 10 14 14 N 1.46501 * 109.47167 * 185.00317 * 13 12 11 15 15 C 1.34776 * 120.00064 * 180.02562 * 14 13 12 16 16 O 1.21283 * 119.99725 * 359.97438 * 15 14 13 17 17 C 1.50703 * 120.00216 * 179.97438 * 15 14 13 18 18 S 1.81001 * 109.47172 * 179.97438 * 17 15 14 19 19 C 1.76197 * 99.99571 * 180.02562 * 18 17 15 20 20 H 1.08000 * 120.00621 * 359.97438 * 19 18 17 21 21 C 1.38800 * 119.99736 * 179.97438 * 19 18 17 22 22 N 1.31633 * 120.00512 * 179.97438 * 21 19 18 23 23 Si 1.86806 * 120.00146 * 0.02562 * 21 19 18 24 24 H 1.48502 * 109.47033 * 89.99846 * 23 21 19 25 25 H 1.48500 * 109.47056 * 209.99914 * 23 21 19 26 26 H 1.48496 * 109.46630 * 330.00044 * 23 21 19 27 27 C 1.48309 * 111.10297 * 169.71386 * 10 7 5 28 28 H 1.08002 * 120.00095 * 359.97438 * 1 2 3 29 29 H 1.08003 * 119.99944 * 179.97438 * 1 2 3 30 30 H 1.08002 * 120.00095 * 180.02562 * 2 1 3 31 31 H 1.09002 * 109.46650 * 5.00427 * 3 2 1 32 32 H 1.08994 * 109.47317 * 244.99772 * 3 2 1 33 33 H 0.97008 * 119.99589 * 0.02562 * 4 3 2 34 34 H 1.08995 * 109.47240 * 64.09287 * 9 7 5 35 35 H 1.09002 * 109.46936 * 184.08800 * 9 7 5 36 36 H 1.08997 * 109.47295 * 304.08851 * 9 7 5 37 37 H 1.09007 * 113.76101 * 23.26148 * 11 10 7 38 38 H 1.09001 * 113.76261 * 252.01121 * 11 10 7 39 39 H 1.09000 * 113.72909 * 90.58407 * 12 11 10 40 40 H 1.09007 * 109.46734 * 304.99484 * 13 12 11 41 41 H 1.08996 * 109.47595 * 64.99191 * 13 12 11 42 42 H 0.96995 * 119.99710 * 359.97438 * 14 13 12 43 43 H 1.09000 * 109.46661 * 299.99672 * 17 15 14 44 44 H 1.08995 * 109.46769 * 59.99390 * 17 15 14 45 45 H 0.96998 * 120.00997 * 179.97438 * 22 21 19 46 46 H 1.09003 * 113.75972 * 108.13608 * 27 10 7 47 47 H 1.08995 * 113.85951 * 336.78100 * 27 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1315 5 6 3.7783 2.4089 1.3335 6 8 3.7139 3.3562 0.5790 7 6 4.7348 2.4366 2.4978 8 1 4.1767 2.3389 3.4289 9 6 5.7246 1.2766 2.3723 10 7 5.4686 3.7092 2.4984 11 6 4.5801 4.8334 2.8666 12 6 5.7473 5.3421 3.7317 13 6 5.3148 5.8691 5.1013 14 7 6.4741 6.4358 5.7949 15 6 6.3308 6.9629 7.0271 16 8 5.2421 6.9684 7.5614 17 6 7.5235 7.5453 7.7408 18 16 7.0116 8.1689 9.3611 19 6 8.5550 8.7749 9.9571 20 1 9.4412 8.6898 9.3456 21 6 8.6321 9.3618 11.2125 22 7 9.7851 9.8141 11.6581 23 14 7.0996 9.5084 12.2707 24 1 6.9659 8.2968 13.1188 25 1 7.2093 10.7095 13.1370 26 1 5.9054 9.6355 11.3972 27 6 6.2360 3.8825 3.7556 28 1 -0.5400 0.9353 0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3585 2.1316 0.0896 32 1 2.6213 1.4025 -0.9313 33 1 3.0450 0.5743 1.7352 34 1 6.3328 1.4131 1.4782 35 1 6.3698 1.2530 3.2505 36 1 5.1763 0.3375 2.2989 37 1 3.7054 4.5315 3.4428 38 1 4.3334 5.4898 2.0320 39 1 6.4191 6.0212 3.2066 40 1 4.5565 6.6413 4.9705 41 1 4.9021 5.0511 5.6917 42 1 7.3448 6.4311 5.3677 43 1 8.2816 6.7731 7.8713 44 1 7.9361 8.3635 7.1507 45 1 9.8389 10.2246 12.5353 46 1 7.3137 3.7781 3.6302 47 1 5.8473 3.3030 4.5929 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732122840.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:38 Heat of formation + Delta-G solvation = -46.752582 kcal Electronic energy + Delta-G solvation = -26062.067003 eV Core-core repulsion = 22178.571266 eV Total energy + Delta-G solvation = -3883.495737 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.77457 -40.64462 -39.89392 -36.78861 -35.95616 -34.66157 -34.40886 -33.22560 -31.44557 -29.10327 -27.83724 -27.71804 -26.90926 -25.65011 -23.51247 -21.89543 -21.52605 -20.72349 -20.59516 -19.79369 -18.29209 -17.87857 -17.61177 -17.33780 -17.06983 -16.87238 -16.66308 -16.42387 -15.95206 -15.64391 -15.47952 -15.19762 -14.93241 -14.71350 -14.46108 -14.42188 -14.12249 -13.66284 -13.52180 -13.43006 -13.33269 -13.20517 -13.11170 -13.00178 -12.72044 -12.66369 -12.17695 -12.07471 -11.94881 -11.82763 -11.59490 -11.16006 -10.99979 -10.94225 -10.52113 -10.51379 -10.13428 -10.06850 -9.78910 -8.98175 -8.50446 -6.21145 1.00685 1.14223 1.32118 1.47972 1.57237 1.58183 1.58676 2.22391 2.23098 2.27441 2.73068 2.87936 2.88079 3.40643 3.58504 3.75527 3.84625 3.89478 3.97535 4.05941 4.13439 4.19895 4.24606 4.26570 4.38115 4.50124 4.53101 4.54307 4.70173 4.71574 4.73813 4.82905 4.86200 4.89462 4.97829 5.12671 5.21744 5.32386 5.33231 5.44880 5.61982 5.71790 5.75024 5.93216 6.12663 6.49279 6.52157 6.94913 7.21497 7.21672 8.61928 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.029082 B = 0.001549 C = 0.001517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.556970 B =18067.803016 C =18456.346605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.180 4.180 3 C 0.147 3.853 4 N -0.717 5.717 5 C 0.514 3.486 6 O -0.568 6.568 7 C 0.029 3.971 8 H 0.090 0.910 9 C -0.135 4.135 10 N -0.474 5.474 11 C 0.022 3.978 12 C -0.115 4.115 13 C 0.134 3.866 14 N -0.709 5.709 15 C 0.535 3.465 16 O -0.565 6.565 17 C -0.112 4.112 18 S -0.177 6.177 19 C -0.529 4.529 20 H 0.063 0.937 21 C 0.047 3.953 22 N -0.917 5.917 23 Si 0.914 3.086 24 H -0.262 1.262 25 H -0.260 1.260 26 H -0.237 1.237 27 C 0.014 3.986 28 H 0.097 0.903 29 H 0.120 0.880 30 H 0.132 0.868 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.415 0.585 34 H 0.056 0.944 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.115 0.885 40 H 0.060 0.940 41 H 0.065 0.935 42 H 0.418 0.582 43 H 0.116 0.884 44 H 0.113 0.887 45 H 0.277 0.723 46 H 0.105 0.895 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.883 -24.323 -24.908 37.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.198 4.198 3 C 0.023 3.977 4 N -0.370 5.370 5 C 0.300 3.700 6 O -0.446 6.446 7 C -0.083 4.083 8 H 0.108 0.892 9 C -0.193 4.193 10 N -0.198 5.198 11 C -0.107 4.107 12 C -0.134 4.134 13 C 0.010 3.990 14 N -0.362 5.362 15 C 0.320 3.680 16 O -0.444 6.444 17 C -0.262 4.262 18 S 0.049 5.951 19 C -0.677 4.677 20 H 0.081 0.919 21 C -0.159 4.159 22 N -0.555 5.555 23 Si 0.736 3.264 24 H -0.186 1.186 25 H -0.184 1.184 26 H -0.161 1.161 27 C -0.114 4.114 28 H 0.115 0.885 29 H 0.138 0.862 30 H 0.150 0.850 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.252 0.748 34 H 0.075 0.925 35 H 0.098 0.902 36 H 0.104 0.896 37 H 0.091 0.909 38 H 0.098 0.902 39 H 0.133 0.867 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.255 0.745 43 H 0.134 0.866 44 H 0.131 0.869 45 H 0.086 0.914 46 H 0.123 0.877 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -15.296 -23.595 -25.115 37.702 hybrid contribution 0.982 0.077 0.730 1.227 sum -14.314 -23.518 -24.385 36.778 Atomic orbital electron populations 1.24177 0.95802 1.03172 0.96835 1.22947 0.96278 0.97439 1.03169 1.20376 0.91484 0.96501 0.89293 1.45919 1.40214 1.19892 1.30989 1.20874 0.80634 0.82097 0.86349 1.90702 1.68730 1.36871 1.48275 1.22322 0.95382 0.94504 0.96130 0.89227 1.21745 0.98601 0.95332 1.03613 1.68630 1.16196 1.01156 1.33772 1.23777 0.94997 0.94015 0.97924 1.23150 0.98852 0.97579 0.93813 1.21379 0.88024 0.97950 0.91677 1.45711 1.13621 1.60844 1.16071 1.19955 0.88892 0.77277 0.81864 1.90691 1.28676 1.57917 1.67097 1.23277 1.00110 1.04730 0.98126 1.84712 1.15645 1.77450 1.17284 1.22472 0.94300 1.45058 1.05851 0.91925 1.25552 0.99107 0.93268 0.97953 1.70014 1.26154 1.39230 1.20138 0.85872 0.80941 0.79311 0.80277 1.18630 1.18408 1.16130 1.24207 1.01460 0.94484 0.91204 0.88502 0.86228 0.85020 0.92430 0.91779 0.74761 0.92473 0.90180 0.89550 0.90946 0.90187 0.86701 0.92187 0.91622 0.74489 0.86630 0.86873 0.91389 0.87662 0.89724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.88 14.32 67.79 0.97 0.09 16 2 C -0.18 -1.09 9.63 25.65 0.25 -0.84 16 3 C 0.15 1.64 6.11 85.63 0.52 2.16 16 4 N -0.72 -7.51 5.42 -466.78 -2.53 -10.04 16 5 C 0.51 8.67 6.96 87.66 0.61 9.28 16 6 O -0.57 -14.91 15.53 -3.02 -0.05 -14.95 16 7 C 0.03 0.36 2.07 44.17 0.09 0.45 16 8 H 0.09 0.83 7.70 -2.39 -0.02 0.81 16 9 C -0.14 -1.08 9.13 71.98 0.66 -0.42 16 10 N -0.47 -7.56 5.67 -883.52 -5.01 -12.57 16 11 C 0.02 0.38 6.30 86.41 0.54 0.92 16 12 C -0.11 -1.63 3.94 -10.15 -0.04 -1.67 16 13 C 0.13 2.56 5.53 86.38 0.48 3.03 16 14 N -0.71 -15.47 5.56 -463.06 -2.57 -18.05 16 15 C 0.53 17.70 7.85 87.66 0.69 18.39 16 16 O -0.57 -23.67 15.86 -3.04 -0.05 -23.72 16 17 C -0.11 -4.08 6.16 71.24 0.44 -3.64 16 18 S -0.18 -8.89 18.55 -56.49 -1.05 -9.94 16 19 C -0.53 -30.66 10.04 67.95 0.68 -29.98 16 20 H 0.06 3.82 8.03 -2.91 -0.02 3.80 16 21 C 0.05 2.72 5.50 84.86 0.47 3.19 16 22 N -0.92 -55.72 13.97 21.65 0.30 -55.42 16 23 Si 0.91 44.85 27.74 68.60 1.90 46.75 16 24 H -0.26 -12.49 7.11 99.48 0.71 -11.78 16 25 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 26 H -0.24 -11.65 6.74 99.48 0.67 -10.98 16 27 C 0.01 0.17 6.73 86.34 0.58 0.75 16 28 H 0.10 0.59 7.84 -2.91 -0.02 0.57 16 29 H 0.12 0.30 8.06 -2.91 -0.02 0.27 16 30 H 0.13 0.38 8.06 -2.91 -0.02 0.36 16 31 H 0.06 0.80 7.79 -2.39 -0.02 0.78 16 32 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.42 1.78 7.83 -92.70 -0.73 1.06 16 34 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.08 0.51 7.66 -2.39 -0.02 0.49 16 36 H 0.09 0.28 7.45 -2.39 -0.02 0.27 16 37 H 0.07 1.15 7.74 -2.38 -0.02 1.13 16 38 H 0.08 1.65 8.08 -2.39 -0.02 1.63 16 39 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 41 H 0.07 1.32 7.84 -2.39 -0.02 1.30 16 42 H 0.42 6.44 8.47 -92.71 -0.79 5.65 16 43 H 0.12 3.82 8.14 -2.39 -0.02 3.80 16 44 H 0.11 3.82 8.14 -2.40 -0.02 3.80 16 45 H 0.28 15.54 8.31 -92.71 -0.77 14.77 16 46 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 47 H 0.08 0.87 7.55 -2.39 -0.02 0.85 16 Total: -1.00 -80.82 404.92 -2.68 -83.50 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -0.58 Total: 12.71 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: 6.94 Total: 1.72 kcal Atomic # 7 Polarization: -86.26 SS G_CDS: -9.81 Total: -96.07 kcal Atomic # 8 Polarization: -38.58 SS G_CDS: -0.10 Total: -38.68 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 1.90 Total: 46.75 kcal Atomic # 16 Polarization: -8.89 SS G_CDS: -1.05 Total: -9.94 kcal Total: -80.82 -2.68 -83.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732122840.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.748 kcal (2) G-P(sol) polarization free energy of solvation -80.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds