Wall clock time and date at job start Wed Apr 1 2020 00:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50694 * 120.00016 * 2 1 4 4 N 1.46499 * 109.47550 * 124.99989 * 3 2 1 5 5 C 1.34777 * 120.00199 * 180.02562 * 4 3 2 6 6 O 1.21283 * 119.99750 * 359.97438 * 5 4 3 7 7 C 1.50702 * 119.99928 * 180.27479 * 5 4 3 8 8 H 1.08994 * 109.46990 * 59.72065 * 7 5 4 9 9 C 1.52996 * 109.46842 * 299.72137 * 7 5 4 10 10 N 1.46902 * 109.47027 * 179.72353 * 7 5 4 11 11 C 1.47479 * 110.99603 * 275.97016 * 10 7 5 12 12 C 1.53514 * 87.92939 * 221.29709 * 11 10 7 13 13 C 1.52996 * 114.17099 * 139.67279 * 12 11 10 14 14 N 1.46500 * 109.47263 * 91.15931 * 13 12 11 15 15 C 1.34773 * 119.99964 * 180.02562 * 14 13 12 16 16 O 1.21288 * 120.00306 * 359.97438 * 15 14 13 17 17 C 1.50702 * 119.99898 * 179.97438 * 15 14 13 18 18 S 1.81004 * 109.47119 * 179.97438 * 17 15 14 19 19 C 1.76202 * 100.00117 * 180.02562 * 18 17 15 20 20 H 1.08007 * 119.99597 * 359.97438 * 19 18 17 21 21 C 1.38795 * 119.99940 * 179.97438 * 19 18 17 22 22 N 1.31630 * 119.99672 * 179.97438 * 21 19 18 23 23 Si 1.86795 * 120.00326 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.46912 * 89.99954 * 23 21 19 25 25 H 1.48493 * 109.47526 * 209.99892 * 23 21 19 26 26 H 1.48501 * 109.47055 * 330.00498 * 23 21 19 27 27 C 1.47478 * 110.99765 * 179.97438 * 10 7 5 28 28 H 1.08002 * 120.00191 * 180.02562 * 1 2 3 29 29 H 1.07995 * 120.00110 * 0.02562 * 1 2 3 30 30 H 1.08002 * 119.99922 * 179.97438 * 2 1 3 31 31 H 1.08998 * 109.47333 * 4.99583 * 3 2 1 32 32 H 1.09002 * 109.47271 * 245.00017 * 3 2 1 33 33 H 0.97000 * 119.99484 * 359.97438 * 4 3 2 34 34 H 1.09001 * 109.47551 * 59.99933 * 9 7 5 35 35 H 1.09003 * 109.46851 * 180.02562 * 9 7 5 36 36 H 1.09002 * 109.47575 * 299.99754 * 9 7 5 37 37 H 1.09003 * 113.47830 * 336.06166 * 11 10 7 38 38 H 1.09001 * 113.47695 * 106.53290 * 11 10 7 39 39 H 1.08999 * 114.17320 * 272.37585 * 12 11 10 40 40 H 1.09003 * 109.47267 * 211.16144 * 13 12 11 41 41 H 1.09006 * 109.47295 * 331.15801 * 13 12 11 42 42 H 0.97001 * 119.99909 * 359.97438 * 14 13 12 43 43 H 1.09002 * 109.47141 * 299.99246 * 17 15 14 44 44 H 1.08994 * 109.47193 * 59.99924 * 17 15 14 45 45 H 0.97004 * 119.99876 * 180.02562 * 22 21 19 46 46 H 1.08998 * 113.47375 * 253.46734 * 27 10 7 47 47 H 1.09004 * 113.47700 * 23.87607 * 27 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 3.7783 2.4091 1.3334 6 8 3.7144 3.3560 0.5782 7 6 4.7397 2.4341 2.4936 8 1 5.4420 1.6058 2.4015 9 6 3.9612 2.2994 3.8039 10 7 5.4775 3.7044 2.4908 11 6 6.6385 3.6391 1.5837 12 6 7.4436 4.3953 2.6498 13 6 8.8766 3.8899 2.8281 14 7 9.7725 4.6399 1.9443 15 6 11.0917 4.3644 1.9306 16 8 11.5373 3.4957 2.6503 17 6 12.0131 5.1355 1.0210 18 16 13.7085 4.5377 1.2321 19 6 14.5460 5.5816 0.0859 20 1 13.9913 6.3126 -0.4837 21 6 15.9184 5.4644 -0.0849 22 7 16.5438 6.2439 -0.9416 23 14 16.8778 4.2005 0.9007 24 1 16.9253 2.9199 0.1503 25 1 18.2601 4.6938 1.1259 26 1 16.2104 3.9829 2.2093 27 6 6.4296 3.7650 3.6155 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3586 2.1316 0.0895 32 1 2.6213 1.4026 -0.9314 33 1 3.0446 0.5748 1.7355 34 1 3.4137 1.3569 3.8060 35 1 4.6566 2.3180 4.6431 36 1 3.2588 3.1278 3.8961 37 1 6.9959 2.6245 1.4081 38 1 6.5013 4.2039 0.6615 39 1 7.3738 5.4805 2.5756 40 1 9.1857 4.0315 3.8638 41 1 8.9221 2.8301 2.5771 42 1 9.4161 5.3344 1.3684 43 1 11.7038 4.9937 -0.0145 44 1 11.9681 6.1952 1.2719 45 1 17.5030 6.1617 -1.0613 46 1 6.1155 4.4363 4.4146 47 1 6.7305 2.7839 3.9830 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732122841.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:42 Heat of formation + Delta-G solvation = -14.241541 kcal Electronic energy + Delta-G solvation = -26046.296063 eV Core-core repulsion = 22164.210110 eV Total energy + Delta-G solvation = -3882.085953 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.24014 -39.67059 -38.96996 -36.24672 -34.95421 -33.72756 -32.68472 -32.42644 -30.19955 -28.26049 -27.18497 -26.16138 -25.61879 -25.00146 -22.85506 -21.05442 -20.72902 -20.09644 -19.90904 -17.97516 -17.57436 -17.05924 -16.43445 -16.39724 -16.11801 -15.76302 -15.49001 -15.28755 -14.98078 -14.82236 -14.54255 -14.05474 -13.83404 -13.73420 -13.31507 -13.22785 -13.15518 -12.95903 -12.80096 -12.72940 -12.62059 -12.13659 -11.96500 -11.76942 -11.56999 -11.27519 -11.21402 -11.00228 -10.84631 -10.58732 -10.46216 -9.97788 -9.85009 -9.54628 -9.50804 -9.26882 -9.00827 -8.94484 -8.49091 -6.90667 -6.27750 -3.99467 1.46156 2.26458 2.72463 2.78540 2.98395 3.30080 3.34410 3.51125 3.54449 3.64332 4.01998 4.15776 4.23863 4.33211 4.34130 4.46518 4.47581 4.53927 4.70971 4.78972 4.91348 4.94064 4.98342 5.09832 5.11340 5.15247 5.20949 5.25072 5.27939 5.30965 5.39451 5.47804 5.58231 5.64855 5.78961 5.83378 5.84318 5.91067 5.92007 6.03940 6.08534 6.49632 6.54821 7.03750 7.62013 7.83752 7.95335 8.43116 8.49679 9.18438 10.81516 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022060 B = 0.001597 C = 0.001551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.968214 B =17527.607414 C =18047.761168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.178 4.178 3 C 0.147 3.853 4 N -0.732 5.732 5 C 0.520 3.480 6 O -0.516 6.516 7 C 0.027 3.973 8 H 0.076 0.924 9 C -0.144 4.144 10 N -0.446 5.446 11 C 0.006 3.994 12 C -0.127 4.127 13 C 0.133 3.867 14 N -0.735 5.735 15 C 0.530 3.470 16 O -0.522 6.522 17 C -0.124 4.124 18 S -0.143 6.143 19 C -0.521 4.521 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.880 5.880 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C 0.009 3.991 28 H 0.104 0.896 29 H 0.101 0.899 30 H 0.116 0.884 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.400 0.600 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.092 0.908 39 H 0.112 0.888 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.401 0.599 43 H 0.097 0.903 44 H 0.098 0.902 45 H 0.271 0.729 46 H 0.092 0.908 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.365 -11.538 7.922 36.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.196 4.196 3 C 0.024 3.976 4 N -0.386 5.386 5 C 0.305 3.695 6 O -0.389 6.389 7 C -0.085 4.085 8 H 0.094 0.906 9 C -0.202 4.202 10 N -0.169 5.169 11 C -0.122 4.122 12 C -0.146 4.146 13 C 0.009 3.991 14 N -0.390 5.390 15 C 0.316 3.684 16 O -0.397 6.397 17 C -0.275 4.275 18 S 0.083 5.917 19 C -0.669 4.669 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.517 5.517 23 Si 0.682 3.318 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 C -0.121 4.121 28 H 0.122 0.878 29 H 0.119 0.881 30 H 0.134 0.866 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.234 0.766 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.111 0.889 39 H 0.130 0.870 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.235 0.765 43 H 0.115 0.885 44 H 0.116 0.884 45 H 0.080 0.920 46 H 0.111 0.889 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -33.053 -11.734 8.385 36.062 hybrid contribution 0.382 -0.283 -0.631 0.791 sum -32.671 -12.017 7.753 35.664 Atomic orbital electron populations 1.24006 0.95782 1.02522 0.97907 1.23005 0.96262 0.98079 1.02287 1.20394 0.91799 0.95574 0.89824 1.45993 1.41530 1.20074 1.31004 1.20414 0.80959 0.82189 0.85959 1.90731 1.67176 1.34773 1.46240 1.22258 0.96815 0.94373 0.95072 0.90599 1.21815 1.00736 1.02757 0.94889 1.68956 1.14486 1.28338 1.05090 1.23991 0.89634 1.00341 0.98276 1.23003 0.92762 1.01694 0.97113 1.21233 0.87004 0.95892 0.94999 1.45943 1.07345 1.40828 1.44848 1.20287 0.81936 0.83281 0.82855 1.90697 1.75630 1.31977 1.41347 1.23282 0.99492 1.03047 1.01677 1.84766 0.97443 1.52199 1.57250 1.22326 0.95881 1.22897 1.25802 0.89374 1.24709 0.96627 0.95480 0.94463 1.69942 1.09947 1.37825 1.33989 0.86732 0.80316 0.81871 0.82912 1.19239 1.19942 1.15934 1.23842 0.91492 1.01076 0.95656 0.87793 0.88116 0.86640 0.91032 0.90608 0.76587 0.91589 0.91003 0.91044 0.91095 0.88924 0.86965 0.91079 0.91603 0.76468 0.88472 0.88401 0.91957 0.88917 0.90694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.57 14.32 29.01 0.42 -0.15 16 2 C -0.18 -0.71 9.63 -36.03 -0.35 -1.05 16 3 C 0.15 0.89 6.11 -5.20 -0.03 0.86 16 4 N -0.73 -4.39 5.44 -61.47 -0.33 -4.73 16 5 C 0.52 4.70 7.10 -10.98 -0.08 4.63 16 6 O -0.52 -6.96 16.23 5.55 0.09 -6.87 16 7 C 0.03 0.19 2.14 -68.86 -0.15 0.04 16 8 H 0.08 0.44 7.52 -51.93 -0.39 0.05 16 9 C -0.14 -0.69 8.99 37.16 0.33 -0.36 16 10 N -0.45 -3.88 5.68 -237.81 -1.35 -5.23 16 11 C 0.01 0.06 6.94 -7.48 -0.05 0.00 16 12 C -0.13 -1.00 4.09 -90.07 -0.37 -1.37 16 13 C 0.13 1.37 5.59 -4.04 -0.02 1.35 16 14 N -0.74 -9.08 5.56 -60.29 -0.33 -9.41 16 15 C 0.53 9.31 7.85 -10.99 -0.09 9.23 16 16 O -0.52 -11.15 15.86 5.55 0.09 -11.06 16 17 C -0.12 -2.40 6.16 36.01 0.22 -2.18 16 18 S -0.14 -3.64 18.55 -107.50 -1.99 -5.63 16 19 C -0.52 -15.10 10.04 30.94 0.31 -14.79 16 20 H 0.09 2.66 8.03 -52.48 -0.42 2.24 16 21 C 0.10 2.81 5.50 -17.43 -0.10 2.72 16 22 N -0.88 -26.68 13.97 55.49 0.78 -25.90 16 23 Si 0.86 21.84 27.74 -169.99 -4.71 17.13 16 24 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.24 -5.99 6.74 56.52 0.38 -5.60 16 27 C 0.01 0.06 6.03 -7.46 -0.04 0.01 16 28 H 0.10 0.24 8.06 -52.49 -0.42 -0.18 16 29 H 0.10 0.34 7.84 -52.49 -0.41 -0.08 16 30 H 0.12 0.34 8.06 -52.49 -0.42 -0.08 16 31 H 0.07 0.49 7.79 -51.93 -0.40 0.09 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.40 1.32 7.89 -40.82 -0.32 0.99 16 34 H 0.07 0.19 7.57 -51.93 -0.39 -0.21 16 35 H 0.07 0.29 7.03 -51.93 -0.36 -0.07 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.60 7.27 -51.93 -0.38 0.22 16 38 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.11 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.07 0.72 7.81 -51.93 -0.41 0.32 16 42 H 0.40 3.93 8.47 -40.82 -0.35 3.58 16 43 H 0.10 1.75 8.14 -51.92 -0.42 1.33 16 44 H 0.10 1.76 8.14 -51.92 -0.42 1.34 16 45 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 46 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 47 H 0.07 0.43 7.62 -51.93 -0.40 0.03 16 LS Contribution 404.88 15.07 6.10 6.10 Total: -1.00 -37.19 404.88 -9.28 -46.48 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -7.62 Total: 0.20 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: 0.01 Total: -1.07 kcal Atomic # 7 Polarization: -44.03 SS G_CDS: -1.25 Total: -45.27 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: 0.18 Total: -17.93 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.71 Total: 17.13 kcal Atomic # 16 Polarization: -3.64 SS G_CDS: -1.99 Total: -5.63 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -37.19 -9.28 -46.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732122841.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.235 kcal (2) G-P(sol) polarization free energy of solvation -37.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds