Wall clock time and date at job start Wed Apr 1 2020 00:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50694 * 120.00016 * 2 1 4 4 N 1.46499 * 109.47550 * 124.99989 * 3 2 1 5 5 C 1.34777 * 120.00199 * 180.02562 * 4 3 2 6 6 O 1.21283 * 119.99750 * 359.97438 * 5 4 3 7 7 C 1.50702 * 119.99928 * 180.27479 * 5 4 3 8 8 H 1.08994 * 109.46990 * 59.72065 * 7 5 4 9 9 C 1.52996 * 109.46842 * 299.72137 * 7 5 4 10 10 N 1.46902 * 109.47027 * 179.72353 * 7 5 4 11 11 C 1.47479 * 110.99603 * 275.97016 * 10 7 5 12 12 C 1.53514 * 87.92939 * 221.29709 * 11 10 7 13 13 C 1.52996 * 114.17099 * 139.67279 * 12 11 10 14 14 N 1.46500 * 109.47263 * 91.15931 * 13 12 11 15 15 C 1.34773 * 119.99964 * 180.02562 * 14 13 12 16 16 O 1.21288 * 120.00306 * 359.97438 * 15 14 13 17 17 C 1.50702 * 119.99898 * 179.97438 * 15 14 13 18 18 S 1.81004 * 109.47119 * 179.97438 * 17 15 14 19 19 C 1.76202 * 100.00117 * 180.02562 * 18 17 15 20 20 H 1.08007 * 119.99597 * 359.97438 * 19 18 17 21 21 C 1.38795 * 119.99940 * 179.97438 * 19 18 17 22 22 N 1.31630 * 119.99672 * 179.97438 * 21 19 18 23 23 Si 1.86795 * 120.00326 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.46912 * 89.99954 * 23 21 19 25 25 H 1.48493 * 109.47526 * 209.99892 * 23 21 19 26 26 H 1.48501 * 109.47055 * 330.00498 * 23 21 19 27 27 C 1.47478 * 110.99765 * 179.97438 * 10 7 5 28 28 H 1.08002 * 120.00191 * 180.02562 * 1 2 3 29 29 H 1.07995 * 120.00110 * 0.02562 * 1 2 3 30 30 H 1.08002 * 119.99922 * 179.97438 * 2 1 3 31 31 H 1.08998 * 109.47333 * 4.99583 * 3 2 1 32 32 H 1.09002 * 109.47271 * 245.00017 * 3 2 1 33 33 H 0.97000 * 119.99484 * 359.97438 * 4 3 2 34 34 H 1.09001 * 109.47551 * 59.99933 * 9 7 5 35 35 H 1.09003 * 109.46851 * 180.02562 * 9 7 5 36 36 H 1.09002 * 109.47575 * 299.99754 * 9 7 5 37 37 H 1.09003 * 113.47830 * 336.06166 * 11 10 7 38 38 H 1.09001 * 113.47695 * 106.53290 * 11 10 7 39 39 H 1.08999 * 114.17320 * 272.37585 * 12 11 10 40 40 H 1.09003 * 109.47267 * 211.16144 * 13 12 11 41 41 H 1.09006 * 109.47295 * 331.15801 * 13 12 11 42 42 H 0.97001 * 119.99909 * 359.97438 * 14 13 12 43 43 H 1.09002 * 109.47141 * 299.99246 * 17 15 14 44 44 H 1.08994 * 109.47193 * 59.99924 * 17 15 14 45 45 H 0.97004 * 119.99876 * 180.02562 * 22 21 19 46 46 H 1.08998 * 113.47375 * 253.46734 * 27 10 7 47 47 H 1.09004 * 113.47700 * 23.87607 * 27 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 3.7783 2.4091 1.3334 6 8 3.7144 3.3560 0.5782 7 6 4.7397 2.4341 2.4936 8 1 5.4420 1.6058 2.4015 9 6 3.9612 2.2994 3.8039 10 7 5.4775 3.7044 2.4908 11 6 6.6385 3.6391 1.5837 12 6 7.4436 4.3953 2.6498 13 6 8.8766 3.8899 2.8281 14 7 9.7725 4.6399 1.9443 15 6 11.0917 4.3644 1.9306 16 8 11.5373 3.4957 2.6503 17 6 12.0131 5.1355 1.0210 18 16 13.7085 4.5377 1.2321 19 6 14.5460 5.5816 0.0859 20 1 13.9913 6.3126 -0.4837 21 6 15.9184 5.4644 -0.0849 22 7 16.5438 6.2439 -0.9416 23 14 16.8778 4.2005 0.9007 24 1 16.9253 2.9199 0.1503 25 1 18.2601 4.6938 1.1259 26 1 16.2104 3.9829 2.2093 27 6 6.4296 3.7650 3.6155 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3586 2.1316 0.0895 32 1 2.6213 1.4026 -0.9314 33 1 3.0446 0.5748 1.7355 34 1 3.4137 1.3569 3.8060 35 1 4.6566 2.3180 4.6431 36 1 3.2588 3.1278 3.8961 37 1 6.9959 2.6245 1.4081 38 1 6.5013 4.2039 0.6615 39 1 7.3738 5.4805 2.5756 40 1 9.1857 4.0315 3.8638 41 1 8.9221 2.8301 2.5771 42 1 9.4161 5.3344 1.3684 43 1 11.7038 4.9937 -0.0145 44 1 11.9681 6.1952 1.2719 45 1 17.5030 6.1617 -1.0613 46 1 6.1155 4.4363 4.4146 47 1 6.7305 2.7839 3.9830 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732122841.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:41 Heat of formation + Delta-G solvation = -44.371322 kcal Electronic energy + Delta-G solvation = -26047.602588 eV Core-core repulsion = 22164.210110 eV Total energy + Delta-G solvation = -3883.392478 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.89025 -40.64435 -40.02068 -36.78854 -35.98701 -34.66996 -34.40297 -33.24418 -31.45989 -29.20688 -27.85566 -27.70013 -26.73247 -25.73007 -23.52081 -21.90228 -21.53922 -20.76572 -20.58464 -19.81496 -18.31209 -17.85276 -17.62325 -17.34302 -17.06496 -16.78733 -16.75738 -16.32581 -15.93168 -15.75878 -15.63464 -15.24501 -14.89429 -14.70690 -14.51684 -14.31283 -14.09112 -13.69965 -13.52528 -13.35495 -13.34496 -13.22222 -13.18917 -12.99616 -12.71252 -12.64929 -12.22018 -12.08410 -11.89647 -11.81788 -11.54683 -11.16587 -10.99813 -10.96927 -10.53553 -10.49995 -10.13262 -10.08867 -9.83928 -8.98869 -8.51022 -6.21978 0.99989 1.14167 1.32097 1.47521 1.57012 1.57975 1.59616 2.19335 2.24912 2.28862 2.72131 2.87288 2.96439 3.35891 3.61687 3.74743 3.83373 3.88559 3.94738 4.05274 4.12697 4.20525 4.22994 4.24513 4.39039 4.48766 4.52665 4.54301 4.69548 4.71890 4.74195 4.81164 4.84107 4.87377 4.97878 5.10812 5.19054 5.31130 5.33341 5.45862 5.61987 5.71022 5.74910 5.94477 6.11788 6.47455 6.53301 6.94043 7.20031 7.23349 8.61476 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022060 B = 0.001597 C = 0.001551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.968214 B =17527.607414 C =18047.761168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.181 4.181 3 C 0.146 3.854 4 N -0.717 5.717 5 C 0.514 3.486 6 O -0.570 6.570 7 C 0.028 3.972 8 H 0.094 0.906 9 C -0.139 4.139 10 N -0.469 5.469 11 C 0.005 3.995 12 C -0.114 4.114 13 C 0.135 3.865 14 N -0.712 5.712 15 C 0.536 3.464 16 O -0.563 6.563 17 C -0.113 4.113 18 S -0.174 6.174 19 C -0.531 4.531 20 H 0.061 0.939 21 C 0.046 3.954 22 N -0.918 5.918 23 Si 0.916 3.084 24 H -0.262 1.262 25 H -0.259 1.259 26 H -0.236 1.236 27 C 0.017 3.983 28 H 0.120 0.880 29 H 0.098 0.902 30 H 0.130 0.870 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.416 0.584 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.055 0.945 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.116 0.884 40 H 0.072 0.928 41 H 0.064 0.936 42 H 0.416 0.584 43 H 0.111 0.889 44 H 0.113 0.887 45 H 0.277 0.723 46 H 0.102 0.898 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.872 -13.300 9.674 38.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.200 4.200 3 C 0.023 3.977 4 N -0.371 5.371 5 C 0.300 3.700 6 O -0.448 6.448 7 C -0.084 4.084 8 H 0.112 0.888 9 C -0.197 4.197 10 N -0.192 5.192 11 C -0.124 4.124 12 C -0.134 4.134 13 C 0.012 3.988 14 N -0.365 5.365 15 C 0.321 3.679 16 O -0.441 6.441 17 C -0.264 4.264 18 S 0.053 5.947 19 C -0.679 4.679 20 H 0.079 0.921 21 C -0.160 4.160 22 N -0.556 5.556 23 Si 0.737 3.263 24 H -0.187 1.187 25 H -0.183 1.183 26 H -0.160 1.160 27 C -0.111 4.111 28 H 0.138 0.862 29 H 0.116 0.884 30 H 0.148 0.852 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.253 0.747 34 H 0.106 0.894 35 H 0.103 0.897 36 H 0.074 0.926 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.134 0.866 40 H 0.090 0.910 41 H 0.082 0.918 42 H 0.253 0.747 43 H 0.130 0.870 44 H 0.131 0.869 45 H 0.086 0.914 46 H 0.121 0.879 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -34.621 -13.508 10.144 38.523 hybrid contribution 0.621 0.305 -1.231 1.413 sum -34.000 -13.203 8.912 37.547 Atomic orbital electron populations 1.24177 0.95680 1.03229 0.96652 1.22934 0.96351 0.97321 1.03345 1.20366 0.91536 0.96583 0.89217 1.45913 1.40435 1.19796 1.30907 1.20918 0.81178 0.81921 0.85947 1.90705 1.68981 1.36835 1.48233 1.22344 0.96718 0.94212 0.95160 0.88845 1.21825 1.00619 1.03320 0.93904 1.68920 1.14819 1.29742 1.05693 1.23952 0.90268 1.00388 0.97769 1.22882 0.91233 1.01779 0.97458 1.21366 0.87553 0.95563 0.94358 1.45766 1.05746 1.40545 1.44482 1.19904 0.83218 0.82632 0.82155 1.90686 1.76622 1.33776 1.43052 1.23289 0.95828 1.04006 1.03314 1.84652 1.01860 1.52022 1.56190 1.22482 0.96389 1.22815 1.26180 0.92101 1.25577 0.97651 0.97312 0.95425 1.70023 1.10668 1.39427 1.35445 0.85848 0.79458 0.79552 0.81395 1.18692 1.18310 1.15969 1.23866 0.90146 1.02011 0.95103 0.86176 0.88356 0.85216 0.92295 0.92139 0.74742 0.89365 0.89674 0.92571 0.90702 0.90947 0.86622 0.91007 0.91779 0.74729 0.87037 0.86855 0.91376 0.87941 0.89030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.86 14.32 67.78 0.97 0.11 16 2 C -0.18 -1.20 9.63 25.64 0.25 -0.95 16 3 C 0.15 1.76 6.11 85.63 0.52 2.28 16 4 N -0.72 -7.92 5.44 -466.79 -2.54 -10.47 16 5 C 0.51 9.07 7.10 87.66 0.62 9.69 16 6 O -0.57 -15.88 16.23 -3.04 -0.05 -15.93 16 7 C 0.03 0.34 2.14 44.17 0.09 0.43 16 8 H 0.09 0.82 7.52 -2.39 -0.02 0.80 16 9 C -0.14 -0.98 8.99 71.98 0.65 -0.34 16 10 N -0.47 -7.49 5.68 -906.29 -5.15 -12.64 16 11 C 0.01 0.08 6.94 83.62 0.58 0.67 16 12 C -0.11 -1.57 4.09 -10.44 -0.04 -1.61 16 13 C 0.14 2.48 5.59 86.38 0.48 2.96 16 14 N -0.71 -16.12 5.56 -463.05 -2.57 -18.69 16 15 C 0.54 17.99 7.85 87.66 0.69 18.68 16 16 O -0.56 -23.44 15.86 -3.05 -0.05 -23.49 16 17 C -0.11 -4.26 6.16 71.24 0.44 -3.82 16 18 S -0.17 -8.78 18.55 -56.49 -1.05 -9.83 16 19 C -0.53 -31.13 10.04 67.95 0.68 -30.45 16 20 H 0.06 3.77 8.03 -2.91 -0.02 3.75 16 21 C 0.05 2.69 5.50 84.86 0.47 3.16 16 22 N -0.92 -56.20 13.97 21.65 0.30 -55.89 16 23 Si 0.92 45.04 27.74 68.60 1.90 46.95 16 24 H -0.26 -12.57 7.11 99.48 0.71 -11.87 16 25 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 26 H -0.24 -11.54 6.74 99.48 0.67 -10.87 16 27 C 0.02 0.19 6.03 83.63 0.50 0.70 16 28 H 0.12 0.28 8.06 -2.91 -0.02 0.26 16 29 H 0.10 0.57 7.84 -2.91 -0.02 0.55 16 30 H 0.13 0.50 8.06 -2.91 -0.02 0.48 16 31 H 0.06 0.86 7.79 -2.39 -0.02 0.84 16 32 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.42 1.87 7.89 -92.71 -0.73 1.14 16 34 H 0.09 0.22 7.57 -2.39 -0.02 0.20 16 35 H 0.08 0.40 7.03 -2.39 -0.02 0.39 16 36 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.07 1.15 7.27 -2.39 -0.02 1.13 16 38 H 0.07 1.48 8.14 -2.39 -0.02 1.47 16 39 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.07 1.38 8.14 -2.39 -0.02 1.37 16 41 H 0.06 1.26 7.81 -2.38 -0.02 1.24 16 42 H 0.42 7.18 8.47 -92.71 -0.79 6.40 16 43 H 0.11 3.88 8.14 -2.39 -0.02 3.86 16 44 H 0.11 3.92 8.14 -2.40 -0.02 3.90 16 45 H 0.28 15.66 8.31 -92.71 -0.77 14.89 16 46 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 47 H 0.09 0.72 7.62 -2.38 -0.02 0.70 16 Total: -1.00 -82.25 404.88 -2.88 -85.13 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -0.58 Total: 13.35 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: 6.90 Total: 1.51 kcal Atomic # 7 Polarization: -87.73 SS G_CDS: -9.96 Total: -97.69 kcal Atomic # 8 Polarization: -39.32 SS G_CDS: -0.10 Total: -39.41 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 1.90 Total: 46.95 kcal Atomic # 16 Polarization: -8.78 SS G_CDS: -1.05 Total: -9.83 kcal Total: -82.25 -2.88 -85.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732122841.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.759 kcal (2) G-P(sol) polarization free energy of solvation -82.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds