Wall clock time and date at job start Wed Apr 1 2020 00:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81397 * 103.00096 * 2 1 4 4 H 1.09007 * 109.46852 * 304.99208 * 3 2 1 5 5 C 1.52995 * 109.47539 * 64.99427 * 3 2 1 6 6 C 1.52997 * 109.47117 * 185.00091 * 3 2 1 7 7 C 1.50704 * 109.47695 * 64.99540 * 6 3 2 8 8 O 1.21280 * 119.99234 * 359.97438 * 7 6 3 9 9 N 1.34773 * 120.00042 * 180.02562 * 7 6 3 10 10 C 1.47857 * 126.93174 * 0.02903 * 9 7 6 11 11 C 1.56014 * 105.11575 * 181.91405 * 10 9 7 12 12 H 1.09004 * 116.90714 * 159.22166 * 11 10 9 13 13 C 1.57083 * 99.59796 * 32.80282 * 11 10 9 14 14 C 1.49282 * 126.92273 * 179.97438 * 9 7 6 15 15 H 1.09004 * 116.75969 * 16.48652 * 14 9 7 16 16 C 1.56012 * 104.13004 * 246.91098 * 14 9 7 17 17 N 1.48288 * 105.06789 * 288.80164 * 16 14 9 18 18 C 1.46894 * 110.99796 * 122.54529 * 17 16 14 19 19 C 1.50707 * 109.46999 * 183.75424 * 18 17 16 20 20 O 1.21289 * 119.99505 * 0.02562 * 19 18 17 21 21 N 1.34773 * 120.00093 * 179.97438 * 19 18 17 22 22 C 1.37100 * 119.99954 * 180.02562 * 21 19 18 23 23 H 1.07994 * 119.99595 * 359.97438 * 22 21 19 24 24 C 1.38951 * 119.99819 * 180.02562 * 22 21 19 25 25 N 1.31415 * 120.00134 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99805 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47224 * 59.99585 * 26 24 22 28 28 H 1.48504 * 109.47132 * 179.97438 * 26 24 22 29 29 H 1.48499 * 109.46954 * 299.99691 * 26 24 22 30 30 H 1.08998 * 109.47335 * 300.00908 * 1 2 3 31 31 H 1.09004 * 109.46529 * 60.00436 * 1 2 3 32 32 H 1.09003 * 109.47140 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47331 * 180.02562 * 5 3 2 34 34 H 1.08991 * 109.47364 * 300.00373 * 5 3 2 35 35 H 1.08999 * 109.46592 * 60.00523 * 5 3 2 36 36 H 1.09007 * 109.47147 * 304.99462 * 6 3 2 37 37 H 1.09003 * 109.47382 * 185.00059 * 6 3 2 38 38 H 1.09001 * 110.31543 * 62.99689 * 10 9 7 39 39 H 1.09001 * 110.31021 * 300.82047 * 10 9 7 40 40 H 1.09001 * 112.36121 * 64.33773 * 13 11 10 41 41 H 1.09007 * 112.35747 * 191.74961 * 13 11 10 42 42 H 1.08995 * 110.32194 * 169.89700 * 16 14 9 43 43 H 1.09003 * 110.32166 * 47.70080 * 16 14 9 44 44 H 1.09000 * 109.47384 * 303.75764 * 18 17 16 45 45 H 1.09007 * 109.47646 * 63.75880 * 18 17 16 46 46 H 0.96998 * 119.99853 * 0.02562 * 21 19 18 47 47 H 0.97000 * 119.99948 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7296 2.2541 -0.8420 5 6 1.7428 2.4017 1.3072 6 6 3.7370 1.9411 -0.1257 7 6 4.1921 1.4268 -1.4672 8 8 3.3842 0.9663 -2.2458 9 7 5.4968 1.4778 -1.8012 10 6 6.6054 2.0023 -0.9753 11 6 7.8782 1.8621 -1.8666 12 1 8.7318 2.4896 -1.6098 13 6 7.2352 2.0969 -3.2804 14 6 6.1141 1.0149 -3.0791 15 1 5.4392 0.8520 -3.9195 16 6 6.9958 -0.2013 -2.6576 17 7 8.1323 0.3877 -1.9090 18 6 8.2158 -0.1714 -0.5532 19 6 9.3217 0.5153 0.2061 20 8 9.9756 1.3852 -0.3295 21 7 9.5834 0.1636 1.4806 22 6 10.5892 0.7887 2.1715 23 1 11.1719 1.5626 1.6943 24 6 10.8593 0.4257 3.4853 25 7 10.1504 -0.5164 4.0657 26 14 12.2301 1.2769 4.4264 27 1 11.9454 2.7321 4.5075 28 1 12.3141 0.7122 5.7973 29 1 13.5202 1.0634 3.7227 30 1 -0.3634 0.5140 0.8899 31 1 -0.3632 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.9876 3.4638 1.3070 34 1 0.6636 2.2780 1.3968 35 1 2.2354 1.9151 2.1490 36 1 4.2339 1.3804 0.6660 37 1 3.9903 2.9976 -0.0366 38 1 6.7128 1.4106 -0.0662 39 1 6.4302 3.0493 -0.7278 40 1 6.8272 3.1018 -3.3887 41 1 7.9158 1.8424 -4.0929 42 1 7.3568 -0.7307 -3.5392 43 1 6.4287 -0.8756 -2.0159 44 1 7.2688 -0.0148 -0.0367 45 1 8.4249 -1.2395 -0.6127 46 1 9.0602 -0.5318 1.9090 47 1 10.3387 -0.7695 4.9829 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732143663.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:11:29 Heat of formation + Delta-G solvation = -22.167497 kcal Electronic energy + Delta-G solvation = -28538.488197 eV Core-core repulsion = 24656.058549 eV Total energy + Delta-G solvation = -3882.429648 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.22329 -38.91918 -37.82680 -34.74204 -34.18655 -33.57390 -31.46821 -30.99168 -29.67736 -29.32856 -27.89961 -26.54631 -24.94425 -24.12393 -22.64895 -21.04594 -20.54295 -19.31729 -18.61401 -17.85549 -17.30965 -16.90865 -16.34129 -16.17233 -15.70616 -15.11896 -15.10450 -14.56295 -14.33717 -14.14604 -13.91328 -13.78160 -13.56457 -13.34863 -13.12757 -12.88136 -12.72177 -12.50079 -12.38130 -12.23334 -11.97337 -11.73689 -11.62082 -11.58663 -11.48447 -11.39625 -11.32144 -11.17909 -11.00755 -10.86393 -10.47098 -10.25249 -9.95853 -9.79741 -9.52226 -8.67811 -8.40111 -8.03319 -7.93336 -7.57484 -6.45369 -3.86655 1.56846 2.45721 2.64665 2.82846 3.16843 3.23610 3.27263 3.83615 3.93574 4.17967 4.26055 4.38069 4.53321 4.55265 4.72357 4.89304 4.92370 4.94729 4.99082 5.03680 5.07289 5.17762 5.19801 5.29986 5.32462 5.38229 5.45132 5.49665 5.51534 5.63797 5.67379 5.77839 5.82043 5.85057 5.89235 5.91653 6.06045 6.18881 6.24474 6.40448 6.99358 7.17197 7.51169 7.52511 8.01296 8.15712 8.56468 9.13419 9.49314 10.00212 10.71988 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011109 B = 0.003175 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2519.786366 B = 8817.039785 C =10469.680297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 S -0.236 6.236 3 C -0.043 4.043 4 H 0.092 0.908 5 C -0.149 4.149 6 C -0.122 4.122 7 C 0.528 3.472 8 O -0.524 6.524 9 N -0.621 5.621 10 C 0.056 3.944 11 C 0.072 3.928 12 H 0.156 0.844 13 C -0.139 4.139 14 C 0.111 3.889 15 H 0.124 0.876 16 C 0.025 3.975 17 N -0.493 5.493 18 C 0.030 3.970 19 C 0.443 3.557 20 O -0.581 6.581 21 N -0.561 5.561 22 C -0.300 4.300 23 H 0.103 0.897 24 C 0.024 3.976 25 N -0.900 5.900 26 Si 0.930 3.070 27 H -0.274 1.274 28 H -0.284 1.284 29 H -0.273 1.273 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.098 0.902 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.071 0.929 36 H 0.102 0.898 37 H 0.105 0.895 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.080 0.920 41 H 0.095 0.905 42 H 0.088 0.912 43 H 0.060 0.940 44 H 0.054 0.946 45 H 0.090 0.910 46 H 0.392 0.608 47 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.581 4.142 -8.105 18.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 S -0.010 6.010 3 C -0.172 4.172 4 H 0.110 0.890 5 C -0.208 4.208 6 C -0.163 4.163 7 C 0.316 3.684 8 O -0.400 6.400 9 N -0.357 5.357 10 C -0.068 4.068 11 C -0.035 4.035 12 H 0.173 0.827 13 C -0.178 4.178 14 C 0.007 3.993 15 H 0.142 0.858 16 C -0.104 4.104 17 N -0.216 5.216 18 C -0.102 4.102 19 C 0.229 3.771 20 O -0.466 6.466 21 N -0.197 5.197 22 C -0.430 4.430 23 H 0.121 0.879 24 C -0.178 4.178 25 N -0.541 5.541 26 Si 0.757 3.243 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.117 0.883 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.120 0.880 37 H 0.123 0.877 38 H 0.100 0.900 39 H 0.090 0.910 40 H 0.098 0.902 41 H 0.113 0.887 42 H 0.106 0.894 43 H 0.079 0.921 44 H 0.071 0.929 45 H 0.108 0.892 46 H 0.225 0.775 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.498 3.367 -8.880 18.176 hybrid contribution -1.255 0.991 1.467 2.170 sum -16.753 4.359 -7.413 18.832 Atomic orbital electron populations 1.23373 0.95244 1.06186 1.04487 1.87048 1.06237 1.10031 1.97715 1.22861 0.97672 0.95253 1.01393 0.88979 1.22114 1.01463 1.01001 0.96206 1.21517 0.94466 1.03743 0.96528 1.20115 0.80572 0.78837 0.88854 1.90736 1.51706 1.45452 1.52147 1.49329 1.05957 1.62174 1.18226 1.23406 0.87684 0.99754 0.95946 1.24900 0.94990 0.90779 0.92863 0.82683 1.24020 0.96884 0.98474 0.98378 1.24003 0.93237 0.94770 0.87250 0.85830 1.23746 0.90979 0.96230 0.99448 1.64730 1.39261 1.03704 1.13953 1.22224 0.98037 1.00208 0.89710 1.19636 0.87536 0.87026 0.82933 1.90455 1.52938 1.34717 1.68494 1.41862 1.32014 1.35394 1.10424 1.19640 1.10649 1.18288 0.94421 0.87896 1.25266 0.98752 0.96777 0.97027 1.69605 1.40370 1.29759 1.14352 0.85930 0.80884 0.79281 0.78198 1.19908 1.20984 1.19863 0.90833 0.90705 0.88349 0.91530 0.92239 0.90974 0.88015 0.87661 0.89971 0.91019 0.90174 0.88690 0.89374 0.92140 0.92874 0.89232 0.77484 0.91757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.08 10.45 101.05 1.06 -0.03 16 2 S -0.24 -2.91 20.24 -107.50 -2.18 -5.09 16 3 C -0.04 -0.44 2.44 -26.74 -0.07 -0.51 16 4 H 0.09 1.01 7.96 -51.92 -0.41 0.59 16 5 C -0.15 -1.20 9.10 37.16 0.34 -0.86 16 6 C -0.12 -1.33 4.46 -27.88 -0.12 -1.46 16 7 C 0.53 7.23 7.61 -10.98 -0.08 7.15 16 8 O -0.52 -8.55 15.15 5.56 0.08 -8.47 16 9 N -0.62 -8.15 2.95 -156.79 -0.46 -8.61 16 10 C 0.06 0.75 5.62 -1.68 -0.01 0.74 16 11 C 0.07 1.07 4.17 -62.33 -0.26 0.81 16 12 H 0.16 2.68 6.39 -51.93 -0.33 2.34 16 13 C -0.14 -1.63 6.81 -22.29 -0.15 -1.79 16 14 C 0.11 1.37 5.22 -62.55 -0.33 1.04 16 15 H 0.12 1.46 8.08 -51.93 -0.42 1.04 16 16 C 0.02 0.33 6.28 -1.45 -0.01 0.32 16 17 N -0.49 -7.84 5.16 -218.20 -1.13 -8.96 16 18 C 0.03 0.52 4.65 -4.98 -0.02 0.49 16 19 C 0.44 9.84 7.44 -10.98 -0.08 9.76 16 20 O -0.58 -14.44 13.59 5.55 0.08 -14.37 16 21 N -0.56 -13.61 5.29 -10.96 -0.06 -13.67 16 22 C -0.30 -8.05 9.68 -14.93 -0.14 -8.19 16 23 H 0.10 2.87 7.16 -52.49 -0.38 2.50 16 24 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 25 N -0.90 -23.91 13.05 55.50 0.72 -23.19 16 26 Si 0.93 20.48 29.55 -169.99 -5.02 15.46 16 27 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 28 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 29 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 30 H 0.07 0.53 7.14 -51.92 -0.37 0.16 16 31 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 32 H 0.10 0.77 8.14 -51.92 -0.42 0.35 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.43 6.92 -51.93 -0.36 0.07 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.08 1.23 5.21 -51.93 -0.27 0.96 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.09 1.06 8.14 -51.92 -0.42 0.64 16 42 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.06 0.85 7.62 -51.93 -0.40 0.46 16 44 H 0.05 0.87 5.65 -51.93 -0.29 0.58 16 45 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 46 H 0.39 9.25 7.90 -40.82 -0.32 8.93 16 47 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 383.63 15.07 5.78 5.78 Total: -1.00 -31.10 383.63 -9.50 -40.60 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: -7.34 Total: 12.51 kcal Atomic # 6 Polarization: 7.99 SS G_CDS: 0.02 Total: 8.01 kcal Atomic # 7 Polarization: -53.51 SS G_CDS: -0.92 Total: -54.43 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: 0.16 Total: -22.84 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Atomic # 16 Polarization: -2.91 SS G_CDS: -2.18 Total: -5.09 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.10 -9.50 -40.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732143663.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.435 kcal (2) G-P(sol) polarization free energy of solvation -31.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds