Wall clock time and date at job start Wed Apr 1 2020 00:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81397 * 103.00096 * 2 1 4 4 H 1.09007 * 109.46852 * 304.99208 * 3 2 1 5 5 C 1.52995 * 109.47539 * 64.99427 * 3 2 1 6 6 C 1.52997 * 109.47117 * 185.00091 * 3 2 1 7 7 C 1.50704 * 109.47695 * 64.99540 * 6 3 2 8 8 O 1.21280 * 119.99234 * 359.97438 * 7 6 3 9 9 N 1.34773 * 120.00042 * 180.02562 * 7 6 3 10 10 C 1.47857 * 126.93174 * 0.02903 * 9 7 6 11 11 C 1.56014 * 105.11575 * 181.91405 * 10 9 7 12 12 H 1.09004 * 116.90714 * 159.22166 * 11 10 9 13 13 C 1.57083 * 99.59796 * 32.80282 * 11 10 9 14 14 C 1.49282 * 126.92273 * 179.97438 * 9 7 6 15 15 H 1.09004 * 116.75969 * 16.48652 * 14 9 7 16 16 C 1.56012 * 104.13004 * 246.91098 * 14 9 7 17 17 N 1.48288 * 105.06789 * 288.80164 * 16 14 9 18 18 C 1.46894 * 110.99796 * 122.54529 * 17 16 14 19 19 C 1.50707 * 109.46999 * 183.75424 * 18 17 16 20 20 O 1.21289 * 119.99505 * 0.02562 * 19 18 17 21 21 N 1.34773 * 120.00093 * 179.97438 * 19 18 17 22 22 C 1.37100 * 119.99954 * 180.02562 * 21 19 18 23 23 H 1.07994 * 119.99595 * 359.97438 * 22 21 19 24 24 C 1.38951 * 119.99819 * 180.02562 * 22 21 19 25 25 N 1.31415 * 120.00134 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99805 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47224 * 59.99585 * 26 24 22 28 28 H 1.48504 * 109.47132 * 179.97438 * 26 24 22 29 29 H 1.48499 * 109.46954 * 299.99691 * 26 24 22 30 30 H 1.08998 * 109.47335 * 300.00908 * 1 2 3 31 31 H 1.09004 * 109.46529 * 60.00436 * 1 2 3 32 32 H 1.09003 * 109.47140 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47331 * 180.02562 * 5 3 2 34 34 H 1.08991 * 109.47364 * 300.00373 * 5 3 2 35 35 H 1.08999 * 109.46592 * 60.00523 * 5 3 2 36 36 H 1.09007 * 109.47147 * 304.99462 * 6 3 2 37 37 H 1.09003 * 109.47382 * 185.00059 * 6 3 2 38 38 H 1.09001 * 110.31543 * 62.99689 * 10 9 7 39 39 H 1.09001 * 110.31021 * 300.82047 * 10 9 7 40 40 H 1.09001 * 112.36121 * 64.33773 * 13 11 10 41 41 H 1.09007 * 112.35747 * 191.74961 * 13 11 10 42 42 H 1.08995 * 110.32194 * 169.89700 * 16 14 9 43 43 H 1.09003 * 110.32166 * 47.70080 * 16 14 9 44 44 H 1.09000 * 109.47384 * 303.75764 * 18 17 16 45 45 H 1.09007 * 109.47646 * 63.75880 * 18 17 16 46 46 H 0.96998 * 119.99853 * 0.02562 * 21 19 18 47 47 H 0.97000 * 119.99948 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7296 2.2541 -0.8420 5 6 1.7428 2.4017 1.3072 6 6 3.7370 1.9411 -0.1257 7 6 4.1921 1.4268 -1.4672 8 8 3.3842 0.9663 -2.2458 9 7 5.4968 1.4778 -1.8012 10 6 6.6054 2.0023 -0.9753 11 6 7.8782 1.8621 -1.8666 12 1 8.7318 2.4896 -1.6098 13 6 7.2352 2.0969 -3.2804 14 6 6.1141 1.0149 -3.0791 15 1 5.4392 0.8520 -3.9195 16 6 6.9958 -0.2013 -2.6576 17 7 8.1323 0.3877 -1.9090 18 6 8.2158 -0.1714 -0.5532 19 6 9.3217 0.5153 0.2061 20 8 9.9756 1.3852 -0.3295 21 7 9.5834 0.1636 1.4806 22 6 10.5892 0.7887 2.1715 23 1 11.1719 1.5626 1.6943 24 6 10.8593 0.4257 3.4853 25 7 10.1504 -0.5164 4.0657 26 14 12.2301 1.2769 4.4264 27 1 11.9454 2.7321 4.5075 28 1 12.3141 0.7122 5.7973 29 1 13.5202 1.0634 3.7227 30 1 -0.3634 0.5140 0.8899 31 1 -0.3632 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.9876 3.4638 1.3070 34 1 0.6636 2.2780 1.3968 35 1 2.2354 1.9151 2.1490 36 1 4.2339 1.3804 0.6660 37 1 3.9903 2.9976 -0.0366 38 1 6.7128 1.4106 -0.0662 39 1 6.4302 3.0493 -0.7278 40 1 6.8272 3.1018 -3.3887 41 1 7.9158 1.8424 -4.0929 42 1 7.3568 -0.7307 -3.5392 43 1 6.4287 -0.8756 -2.0159 44 1 7.2688 -0.0148 -0.0367 45 1 8.4249 -1.2395 -0.6127 46 1 9.0602 -0.5318 1.9090 47 1 10.3387 -0.7695 4.9829 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732143663.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:11:29 Heat of formation + Delta-G solvation = -43.133090 kcal Electronic energy + Delta-G solvation = -28539.397333 eV Core-core repulsion = 24656.058549 eV Total energy + Delta-G solvation = -3883.338784 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.36723 -40.21453 -39.42575 -36.00302 -35.57579 -34.92383 -33.28733 -32.29666 -30.78458 -30.08289 -28.75147 -28.03768 -26.22731 -25.67437 -23.52720 -22.02665 -21.79853 -20.95822 -19.97106 -19.54268 -18.37560 -17.89326 -17.75758 -17.34414 -17.00097 -16.45124 -16.31217 -16.13089 -15.62835 -15.39348 -15.23951 -14.84502 -14.62300 -14.39479 -14.17435 -14.04036 -13.79479 -13.61292 -13.49047 -13.32337 -13.17374 -12.98975 -12.96733 -12.81698 -12.60677 -12.46239 -12.41369 -12.39831 -12.28293 -12.17322 -12.10712 -11.99282 -11.43595 -10.95688 -10.71668 -10.20305 -9.98244 -9.78314 -9.20172 -8.51232 -8.43613 -5.92126 0.76937 1.41554 1.44210 1.54513 1.58787 1.66681 1.82771 2.05965 2.29831 2.72935 3.22053 3.25896 3.28716 3.46666 3.55566 3.61130 3.77735 3.97881 4.00118 4.12732 4.14725 4.28962 4.30585 4.33229 4.37294 4.40859 4.46170 4.54428 4.55454 4.62087 4.71575 4.72640 4.79536 4.83279 4.91494 4.93812 4.99057 5.16905 5.18724 5.22608 5.44066 5.78426 5.85211 6.07590 6.46473 6.61851 7.10324 7.15087 7.57925 8.12274 8.73485 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011109 B = 0.003175 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2519.786366 B = 8817.039785 C =10469.680297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 S -0.314 6.314 3 C -0.027 4.027 4 H 0.087 0.913 5 C -0.143 4.143 6 C -0.120 4.120 7 C 0.525 3.475 8 O -0.552 6.552 9 N -0.619 5.619 10 C 0.065 3.935 11 C 0.061 3.939 12 H 0.129 0.871 13 C -0.120 4.120 14 C 0.112 3.888 15 H 0.135 0.865 16 C 0.029 3.971 17 N -0.507 5.507 18 C 0.043 3.957 19 C 0.448 3.552 20 O -0.607 6.607 21 N -0.573 5.573 22 C -0.328 4.328 23 H 0.084 0.916 24 C -0.013 4.013 25 N -0.922 5.922 26 Si 0.991 3.009 27 H -0.269 1.269 28 H -0.274 1.274 29 H -0.273 1.273 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.105 0.895 33 H 0.083 0.917 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.097 0.903 37 H 0.129 0.871 38 H 0.065 0.935 39 H 0.089 0.911 40 H 0.096 0.904 41 H 0.104 0.896 42 H 0.105 0.895 43 H 0.052 0.948 44 H 0.066 0.934 45 H 0.099 0.901 46 H 0.393 0.607 47 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.656 5.090 -8.273 20.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.275 4.275 2 S -0.088 6.088 3 C -0.156 4.156 4 H 0.106 0.894 5 C -0.202 4.202 6 C -0.160 4.160 7 C 0.315 3.685 8 O -0.430 6.430 9 N -0.355 5.355 10 C -0.059 4.059 11 C -0.047 4.047 12 H 0.146 0.854 13 C -0.159 4.159 14 C 0.010 3.990 15 H 0.152 0.848 16 C -0.099 4.099 17 N -0.231 5.231 18 C -0.088 4.088 19 C 0.235 3.765 20 O -0.493 6.493 21 N -0.210 5.210 22 C -0.458 4.458 23 H 0.102 0.898 24 C -0.213 4.213 25 N -0.563 5.563 26 Si 0.815 3.185 27 H -0.194 1.194 28 H -0.199 1.199 29 H -0.198 1.198 30 H 0.109 0.891 31 H 0.097 0.903 32 H 0.124 0.876 33 H 0.102 0.898 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.115 0.885 37 H 0.147 0.853 38 H 0.083 0.917 39 H 0.107 0.893 40 H 0.114 0.886 41 H 0.122 0.878 42 H 0.123 0.877 43 H 0.070 0.930 44 H 0.083 0.917 45 H 0.117 0.883 46 H 0.227 0.773 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -16.583 4.312 -9.057 19.381 hybrid contribution -0.947 0.693 1.433 1.852 sum -17.530 5.005 -7.624 19.761 Atomic orbital electron populations 1.23375 0.91581 1.07044 1.05512 1.87271 1.10507 1.13158 1.97902 1.22838 0.97124 0.93168 1.02476 0.89436 1.22080 1.02007 1.01632 0.94478 1.21585 0.94912 1.04871 0.94679 1.20554 0.80309 0.78243 0.89429 1.90721 1.52341 1.46732 1.53245 1.49366 1.05799 1.61918 1.18380 1.23235 0.87281 1.00417 0.94944 1.24750 0.94724 0.89806 0.95414 0.85370 1.23950 0.96229 0.99144 0.96538 1.24081 0.93311 0.94379 0.87278 0.84773 1.23766 0.90267 0.96484 0.99410 1.64740 1.40945 1.04573 1.12856 1.22054 0.96426 1.00033 0.90331 1.20420 0.87660 0.86116 0.82301 1.90444 1.54119 1.35811 1.68962 1.41927 1.32069 1.35775 1.11209 1.19629 1.11868 1.18925 0.95366 0.89848 1.26019 1.00684 0.97217 0.97342 1.69678 1.41393 1.30485 1.14722 0.85016 0.77964 0.78434 0.77119 1.19405 1.19911 1.19831 0.89084 0.90290 0.87625 0.89791 0.91205 0.91527 0.88504 0.85290 0.91693 0.89326 0.88590 0.87788 0.87691 0.92993 0.91689 0.88320 0.77322 0.91423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.71 10.45 113.37 1.19 -0.52 16 2 S -0.31 -7.62 20.24 -56.49 -1.14 -8.77 16 3 C -0.03 -0.53 2.44 30.59 0.07 -0.45 16 4 H 0.09 1.79 7.96 -2.39 -0.02 1.77 16 5 C -0.14 -2.01 9.10 71.98 0.66 -1.35 16 6 C -0.12 -2.47 4.46 29.85 0.13 -2.34 16 7 C 0.53 13.79 7.61 87.66 0.67 14.46 16 8 O -0.55 -17.59 15.15 -3.03 -0.05 -17.64 16 9 N -0.62 -15.39 2.95 -768.35 -2.26 -17.65 16 10 C 0.07 1.69 5.62 87.16 0.49 2.18 16 11 C 0.06 1.76 4.17 46.85 0.20 1.95 16 12 H 0.13 4.48 6.39 -2.39 -0.02 4.47 16 13 C -0.12 -2.59 6.81 33.47 0.23 -2.36 16 14 C 0.11 2.57 5.22 46.94 0.25 2.82 16 15 H 0.13 2.87 8.08 -2.38 -0.02 2.86 16 16 C 0.03 0.74 6.28 87.08 0.55 1.28 16 17 N -0.51 -15.77 5.16 -844.24 -4.35 -20.13 16 18 C 0.04 1.49 4.65 85.56 0.40 1.89 16 19 C 0.45 20.23 7.44 87.66 0.65 20.88 16 20 O -0.61 -30.85 13.59 -3.06 -0.04 -30.89 16 21 N -0.57 -28.43 5.29 -306.99 -1.62 -30.05 16 22 C -0.33 -17.95 9.68 84.04 0.81 -17.14 16 23 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 24 C -0.01 -0.67 5.50 84.93 0.47 -0.21 16 25 N -0.92 -49.08 13.05 21.66 0.28 -48.80 16 26 Si 0.99 41.88 29.55 68.60 2.03 43.90 16 27 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 28 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 29 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 30 H 0.09 1.12 7.14 -2.39 -0.02 1.11 16 31 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.11 1.51 8.14 -2.39 -0.02 1.50 16 33 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.07 0.84 6.92 -2.39 -0.02 0.82 16 35 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.10 2.13 8.14 -2.38 -0.02 2.11 16 37 H 0.13 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.07 1.93 5.21 -2.39 -0.01 1.91 16 39 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.10 1.79 8.14 -2.39 -0.02 1.78 16 41 H 0.10 2.08 8.14 -2.38 -0.02 2.06 16 42 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 43 H 0.05 1.41 7.62 -2.39 -0.02 1.39 16 44 H 0.07 2.13 5.65 -2.39 -0.01 2.12 16 45 H 0.10 3.25 8.14 -2.38 -0.02 3.23 16 46 H 0.39 18.98 7.90 -92.71 -0.73 18.25 16 47 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 Total: -1.00 -67.68 383.63 -0.16 -67.84 By element: Atomic # 1 Polarization: 40.85 SS G_CDS: 0.25 Total: 41.10 kcal Atomic # 6 Polarization: 14.33 SS G_CDS: 6.75 Total: 21.08 kcal Atomic # 7 Polarization: -108.67 SS G_CDS: -7.96 Total: -116.63 kcal Atomic # 8 Polarization: -48.45 SS G_CDS: -0.09 Total: -48.53 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.90 kcal Atomic # 16 Polarization: -7.62 SS G_CDS: -1.14 Total: -8.77 kcal Total: -67.68 -0.16 -67.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732143663.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.708 kcal (2) G-P(sol) polarization free energy of solvation -67.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds