Wall clock time and date at job start Wed Apr 1 2020 00:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81401 * 103.00287 * 2 1 4 4 H 1.08997 * 109.46766 * 55.00087 * 3 2 1 5 5 C 1.53005 * 109.47120 * 294.99910 * 3 2 1 6 6 C 1.53000 * 109.47403 * 174.99895 * 3 2 1 7 7 C 1.50701 * 109.47151 * 295.00465 * 6 3 2 8 8 O 1.21278 * 120.00279 * 359.97438 * 7 6 3 9 9 N 1.34780 * 119.99679 * 180.02562 * 7 6 3 10 10 C 1.47855 * 126.92860 * 359.96308 * 9 7 6 11 11 C 1.56031 * 105.11313 * 181.96168 * 10 9 7 12 12 H 1.08994 * 116.90740 * 159.22836 * 11 10 9 13 13 C 1.57082 * 99.59388 * 32.80752 * 11 10 9 14 14 C 1.49283 * 126.92047 * 179.97438 * 9 7 6 15 15 H 1.09000 * 116.75928 * 16.44205 * 14 9 7 16 16 C 1.56010 * 104.12712 * 246.86087 * 14 9 7 17 17 N 1.48287 * 105.07041 * 288.80055 * 16 14 9 18 18 C 1.46899 * 110.99706 * 122.54524 * 17 16 14 19 19 C 1.50700 * 109.47222 * 76.51006 * 18 17 16 20 20 O 1.21288 * 120.00045 * 0.02562 * 19 18 17 21 21 N 1.34779 * 120.00158 * 179.97438 * 19 18 17 22 22 C 1.37091 * 120.00149 * 180.02562 * 21 19 18 23 23 H 1.07999 * 119.99922 * 0.02562 * 22 21 19 24 24 C 1.38955 * 120.00025 * 180.02562 * 22 21 19 25 25 N 1.31406 * 119.99837 * 359.97438 * 24 22 21 26 26 Si 1.86794 * 120.00060 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47354 * 359.97438 * 26 24 22 28 28 H 1.48498 * 109.47449 * 119.99668 * 26 24 22 29 29 H 1.48493 * 109.47199 * 240.00126 * 26 24 22 30 30 H 1.08998 * 109.46718 * 300.00240 * 1 2 3 31 31 H 1.09001 * 109.46772 * 59.99937 * 1 2 3 32 32 H 1.08992 * 109.47183 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.46968 * 179.97438 * 5 3 2 34 34 H 1.09005 * 109.46945 * 300.00105 * 5 3 2 35 35 H 1.08999 * 109.46461 * 59.99747 * 5 3 2 36 36 H 1.08997 * 109.47662 * 174.99706 * 6 3 2 37 37 H 1.09000 * 109.46872 * 55.00071 * 6 3 2 38 38 H 1.09005 * 110.31531 * 63.05673 * 10 9 7 39 39 H 1.08997 * 110.32176 * 300.86826 * 10 9 7 40 40 H 1.09004 * 112.36087 * 64.34018 * 13 11 10 41 41 H 1.09008 * 112.35513 * 191.74806 * 13 11 10 42 42 H 1.09004 * 110.31767 * 169.90062 * 16 14 9 43 43 H 1.08993 * 110.31887 * 47.70080 * 16 14 9 44 44 H 1.09005 * 109.47028 * 196.50900 * 18 17 16 45 45 H 1.08998 * 109.47343 * 316.50989 * 18 17 16 46 46 H 0.97003 * 119.99908 * 0.02562 * 21 19 18 47 47 H 0.97006 * 120.00056 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7296 2.2541 0.8418 5 6 1.7429 2.4016 -1.3074 6 6 3.7370 1.9412 0.1257 7 6 4.1920 1.4269 1.4672 8 8 3.3841 0.9672 2.2462 9 7 5.4966 1.4788 1.8016 10 6 6.6050 2.0043 0.9762 11 6 7.8918 1.7724 1.8277 12 1 8.8415 1.7596 1.2930 13 6 7.4832 0.4461 2.5636 14 6 6.1137 1.0170 3.0801 15 1 5.5141 0.3529 3.7027 16 6 6.6153 2.3301 3.7569 17 7 7.7750 2.7653 2.9417 18 6 7.5706 4.1224 2.4179 19 6 7.8020 5.1257 3.5183 20 8 8.1077 4.7475 4.6294 21 7 7.6703 6.4434 3.2675 22 6 7.8814 7.3562 4.2684 23 1 8.1536 7.0194 5.2577 24 6 7.7451 8.7147 4.0099 25 7 7.4144 9.1244 2.8060 26 14 8.0320 9.9583 5.3738 27 1 8.3901 9.2455 6.6264 28 1 9.1395 10.8693 4.9882 29 1 6.7939 10.7487 5.5914 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.9877 3.4637 -1.3072 34 1 2.2355 1.9149 -2.1492 35 1 0.6637 2.2778 -1.3969 36 1 3.9904 2.9975 0.0366 37 1 4.2339 1.3804 -0.6659 38 1 6.4638 3.0683 0.7861 39 1 6.6697 1.4564 0.0362 40 1 7.3515 -0.3874 1.8736 41 1 8.1628 0.1981 3.3790 42 1 6.9265 2.1322 4.7827 43 1 5.8329 3.0886 3.7375 44 1 8.2719 4.3073 1.6042 45 1 6.5502 4.2189 2.0471 46 1 7.4262 6.7459 2.3788 47 1 7.3196 10.0728 2.6254 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732143664.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:11:32 Heat of formation + Delta-G solvation = -25.334870 kcal Electronic energy + Delta-G solvation = -28219.257487 eV Core-core repulsion = 24336.690491 eV Total energy + Delta-G solvation = -3882.566996 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.26156 -38.91505 -37.84680 -34.79224 -34.17431 -33.57167 -31.46119 -30.99258 -29.80779 -29.37943 -27.95062 -26.55880 -25.03465 -24.13999 -22.71560 -21.13532 -20.55330 -19.50225 -18.53456 -17.82918 -17.35550 -16.91964 -16.70490 -16.04897 -15.55486 -15.32357 -14.87529 -14.73475 -14.43237 -14.17178 -13.86467 -13.79025 -13.55702 -13.43563 -13.20812 -12.99869 -12.71715 -12.48301 -12.43602 -12.20627 -12.08216 -12.01636 -11.68477 -11.65449 -11.52892 -11.49336 -11.31206 -11.16636 -11.11655 -10.84800 -10.34620 -10.22539 -10.03008 -9.85362 -9.51196 -8.82378 -8.43425 -7.96934 -7.91056 -7.65212 -6.42066 -3.82434 1.50837 2.38925 2.61047 2.75861 3.16017 3.26575 3.33825 3.80172 3.90885 4.12183 4.20853 4.30640 4.34033 4.47564 4.69350 4.83322 4.86884 4.90475 4.92769 4.94576 5.03128 5.12302 5.19223 5.22867 5.24478 5.28796 5.37203 5.46229 5.46293 5.58770 5.64690 5.66208 5.74749 5.76488 5.77821 5.78739 5.96370 6.07073 6.26722 6.32367 6.95632 7.11813 7.45918 7.55312 8.06410 8.11936 8.61991 9.18726 9.54512 10.06787 10.75931 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012986 B = 0.002732 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2155.575234 B =10246.925523 C =11608.164584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 S -0.242 6.242 3 C -0.044 4.044 4 H 0.094 0.906 5 C -0.148 4.148 6 C -0.120 4.120 7 C 0.527 3.473 8 O -0.519 6.519 9 N -0.622 5.622 10 C 0.060 3.940 11 C 0.052 3.948 12 H 0.135 0.865 13 C -0.132 4.132 14 C 0.109 3.891 15 H 0.126 0.874 16 C 0.042 3.958 17 N -0.488 5.488 18 C 0.035 3.965 19 C 0.445 3.555 20 O -0.574 6.574 21 N -0.567 5.567 22 C -0.296 4.296 23 H 0.103 0.897 24 C 0.021 3.979 25 N -0.903 5.903 26 Si 0.928 3.072 27 H -0.268 1.268 28 H -0.281 1.281 29 H -0.282 1.282 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.098 0.902 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.106 0.894 37 H 0.099 0.901 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.081 0.919 41 H 0.097 0.903 42 H 0.093 0.907 43 H 0.060 0.940 44 H 0.089 0.911 45 H 0.052 0.948 46 H 0.391 0.609 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.173 -16.455 -12.192 22.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 S -0.016 6.016 3 C -0.173 4.173 4 H 0.113 0.887 5 C -0.207 4.207 6 C -0.161 4.161 7 C 0.315 3.685 8 O -0.394 6.394 9 N -0.358 5.358 10 C -0.065 4.065 11 C -0.056 4.056 12 H 0.153 0.847 13 C -0.171 4.171 14 C 0.005 3.995 15 H 0.143 0.857 16 C -0.086 4.086 17 N -0.211 5.211 18 C -0.096 4.096 19 C 0.230 3.770 20 O -0.457 6.457 21 N -0.205 5.205 22 C -0.425 4.425 23 H 0.121 0.879 24 C -0.180 4.180 25 N -0.545 5.545 26 Si 0.755 3.245 27 H -0.192 1.192 28 H -0.207 1.207 29 H -0.208 1.208 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.116 0.884 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.124 0.876 37 H 0.118 0.882 38 H 0.098 0.902 39 H 0.089 0.911 40 H 0.100 0.900 41 H 0.116 0.884 42 H 0.111 0.889 43 H 0.078 0.922 44 H 0.107 0.893 45 H 0.069 0.931 46 H 0.224 0.776 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.405 -17.595 -10.774 21.920 hybrid contribution -1.614 2.171 -0.591 2.768 sum -9.019 -15.425 -11.364 21.175 Atomic orbital electron populations 1.23371 0.94951 1.06176 1.04675 1.86854 1.06624 1.10343 1.97746 1.22882 0.97706 0.95054 1.01638 0.88749 1.22108 1.01528 1.01152 0.95915 1.21504 0.94512 1.03741 0.96294 1.20115 0.80596 0.78858 0.88888 1.90756 1.51509 1.45144 1.52016 1.49263 1.05895 1.62257 1.18363 1.23330 0.87991 0.99948 0.95197 1.24765 0.96270 0.92761 0.91811 0.84706 1.23934 0.96132 0.96178 1.00827 1.24129 0.92786 0.96465 0.86071 0.85654 1.23623 0.91535 0.94875 0.98582 1.64611 1.39535 1.00151 1.16846 1.22137 1.00232 0.89595 0.97677 1.19726 0.84696 0.83089 0.89502 1.90525 1.51987 1.79255 1.23948 1.41860 1.61337 1.04193 1.13068 1.19734 1.43705 0.86047 0.93063 0.87923 1.25242 0.97384 0.97938 0.97443 1.69614 1.48387 1.16367 1.20145 0.85815 0.77846 0.80005 0.80791 1.19224 1.20746 1.20812 0.90532 0.90802 0.88366 0.91328 0.91218 0.92191 0.87575 0.88234 0.90216 0.91056 0.90013 0.88438 0.88903 0.92176 0.89315 0.93052 0.77641 0.91989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.01 10.45 101.05 1.06 0.05 16 2 S -0.24 -2.71 20.24 -107.50 -2.18 -4.89 16 3 C -0.04 -0.43 2.44 -26.73 -0.07 -0.50 16 4 H 0.09 1.08 7.95 -51.93 -0.41 0.66 16 5 C -0.15 -1.08 9.10 37.16 0.34 -0.75 16 6 C -0.12 -1.17 4.46 -27.88 -0.12 -1.30 16 7 C 0.53 6.99 7.61 -10.98 -0.08 6.90 16 8 O -0.52 -8.61 15.16 5.56 0.08 -8.53 16 9 N -0.62 -7.59 2.95 -156.78 -0.46 -8.06 16 10 C 0.06 0.60 5.63 -1.68 -0.01 0.59 16 11 C 0.05 0.57 5.21 -62.32 -0.32 0.24 16 12 H 0.14 1.19 8.14 -51.93 -0.42 0.76 16 13 C -0.13 -1.34 6.81 -22.29 -0.15 -1.50 16 14 C 0.11 1.37 5.22 -62.55 -0.33 1.04 16 15 H 0.13 1.59 8.08 -51.93 -0.42 1.17 16 16 C 0.04 0.66 5.44 -1.45 -0.01 0.66 16 17 N -0.49 -7.54 4.84 -218.19 -1.06 -8.60 16 18 C 0.04 0.59 4.13 -4.98 -0.02 0.57 16 19 C 0.44 10.36 7.63 -10.98 -0.08 10.28 16 20 O -0.57 -15.52 15.47 5.55 0.09 -15.43 16 21 N -0.57 -14.22 5.29 -10.96 -0.06 -14.28 16 22 C -0.30 -8.22 9.68 -14.93 -0.14 -8.37 16 23 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 24 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 25 N -0.90 -24.41 13.05 55.50 0.72 -23.68 16 26 Si 0.93 21.07 29.55 -169.99 -5.02 16.05 16 27 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 28 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 29 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.49 7.14 -51.92 -0.37 0.12 16 32 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.41 6.92 -51.93 -0.36 0.05 16 36 H 0.11 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.08 0.83 5.54 -51.93 -0.29 0.54 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.10 0.99 8.14 -51.92 -0.42 0.56 16 42 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 43 H 0.06 1.08 7.42 -51.93 -0.39 0.70 16 44 H 0.09 1.30 8.03 -51.93 -0.42 0.89 16 45 H 0.05 0.81 6.11 -51.93 -0.32 0.50 16 46 H 0.39 9.31 7.90 -40.82 -0.32 8.99 16 47 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 387.30 15.07 5.84 5.84 Total: -1.00 -33.95 387.30 -9.54 -43.49 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -7.45 Total: 9.69 kcal Atomic # 6 Polarization: 8.44 SS G_CDS: -0.04 Total: 8.39 kcal Atomic # 7 Polarization: -53.76 SS G_CDS: -0.85 Total: -54.62 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: 0.17 Total: -23.96 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: -2.71 SS G_CDS: -2.18 Total: -4.89 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.95 -9.54 -43.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732143664.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.159 kcal (2) G-P(sol) polarization free energy of solvation -33.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds