Wall clock time and date at job start Wed Apr 1 2020 00:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81401 * 103.00287 * 2 1 4 4 H 1.08997 * 109.46766 * 55.00087 * 3 2 1 5 5 C 1.53005 * 109.47120 * 294.99910 * 3 2 1 6 6 C 1.53000 * 109.47403 * 174.99895 * 3 2 1 7 7 C 1.50701 * 109.47151 * 295.00465 * 6 3 2 8 8 O 1.21278 * 120.00279 * 359.97438 * 7 6 3 9 9 N 1.34780 * 119.99679 * 180.02562 * 7 6 3 10 10 C 1.47855 * 126.92860 * 359.96308 * 9 7 6 11 11 C 1.56031 * 105.11313 * 181.96168 * 10 9 7 12 12 H 1.08994 * 116.90740 * 159.22836 * 11 10 9 13 13 C 1.57082 * 99.59388 * 32.80752 * 11 10 9 14 14 C 1.49283 * 126.92047 * 179.97438 * 9 7 6 15 15 H 1.09000 * 116.75928 * 16.44205 * 14 9 7 16 16 C 1.56010 * 104.12712 * 246.86087 * 14 9 7 17 17 N 1.48287 * 105.07041 * 288.80055 * 16 14 9 18 18 C 1.46899 * 110.99706 * 122.54524 * 17 16 14 19 19 C 1.50700 * 109.47222 * 76.51006 * 18 17 16 20 20 O 1.21288 * 120.00045 * 0.02562 * 19 18 17 21 21 N 1.34779 * 120.00158 * 179.97438 * 19 18 17 22 22 C 1.37091 * 120.00149 * 180.02562 * 21 19 18 23 23 H 1.07999 * 119.99922 * 0.02562 * 22 21 19 24 24 C 1.38955 * 120.00025 * 180.02562 * 22 21 19 25 25 N 1.31406 * 119.99837 * 359.97438 * 24 22 21 26 26 Si 1.86794 * 120.00060 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47354 * 359.97438 * 26 24 22 28 28 H 1.48498 * 109.47449 * 119.99668 * 26 24 22 29 29 H 1.48493 * 109.47199 * 240.00126 * 26 24 22 30 30 H 1.08998 * 109.46718 * 300.00240 * 1 2 3 31 31 H 1.09001 * 109.46772 * 59.99937 * 1 2 3 32 32 H 1.08992 * 109.47183 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.46968 * 179.97438 * 5 3 2 34 34 H 1.09005 * 109.46945 * 300.00105 * 5 3 2 35 35 H 1.08999 * 109.46461 * 59.99747 * 5 3 2 36 36 H 1.08997 * 109.47662 * 174.99706 * 6 3 2 37 37 H 1.09000 * 109.46872 * 55.00071 * 6 3 2 38 38 H 1.09005 * 110.31531 * 63.05673 * 10 9 7 39 39 H 1.08997 * 110.32176 * 300.86826 * 10 9 7 40 40 H 1.09004 * 112.36087 * 64.34018 * 13 11 10 41 41 H 1.09008 * 112.35513 * 191.74806 * 13 11 10 42 42 H 1.09004 * 110.31767 * 169.90062 * 16 14 9 43 43 H 1.08993 * 110.31887 * 47.70080 * 16 14 9 44 44 H 1.09005 * 109.47028 * 196.50900 * 18 17 16 45 45 H 1.08998 * 109.47343 * 316.50989 * 18 17 16 46 46 H 0.97003 * 119.99908 * 0.02562 * 21 19 18 47 47 H 0.97006 * 120.00056 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7296 2.2541 0.8418 5 6 1.7429 2.4016 -1.3074 6 6 3.7370 1.9412 0.1257 7 6 4.1920 1.4269 1.4672 8 8 3.3841 0.9672 2.2462 9 7 5.4966 1.4788 1.8016 10 6 6.6050 2.0043 0.9762 11 6 7.8918 1.7724 1.8277 12 1 8.8415 1.7596 1.2930 13 6 7.4832 0.4461 2.5636 14 6 6.1137 1.0170 3.0801 15 1 5.5141 0.3529 3.7027 16 6 6.6153 2.3301 3.7569 17 7 7.7750 2.7653 2.9417 18 6 7.5706 4.1224 2.4179 19 6 7.8020 5.1257 3.5183 20 8 8.1077 4.7475 4.6294 21 7 7.6703 6.4434 3.2675 22 6 7.8814 7.3562 4.2684 23 1 8.1536 7.0194 5.2577 24 6 7.7451 8.7147 4.0099 25 7 7.4144 9.1244 2.8060 26 14 8.0320 9.9583 5.3738 27 1 8.3901 9.2455 6.6264 28 1 9.1395 10.8693 4.9882 29 1 6.7939 10.7487 5.5914 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.9877 3.4637 -1.3072 34 1 2.2355 1.9149 -2.1492 35 1 0.6637 2.2778 -1.3969 36 1 3.9904 2.9975 0.0366 37 1 4.2339 1.3804 -0.6659 38 1 6.4638 3.0683 0.7861 39 1 6.6697 1.4564 0.0362 40 1 7.3515 -0.3874 1.8736 41 1 8.1628 0.1981 3.3790 42 1 6.9265 2.1322 4.7827 43 1 5.8329 3.0886 3.7375 44 1 8.2719 4.3073 1.6042 45 1 6.5502 4.2189 2.0471 46 1 7.4262 6.7459 2.3788 47 1 7.3196 10.0728 2.6254 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732143664.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:11:31 Heat of formation + Delta-G solvation = -49.545221 kcal Electronic energy + Delta-G solvation = -28220.307327 eV Core-core repulsion = 24336.690491 eV Total energy + Delta-G solvation = -3883.616835 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.29449 -40.16392 -39.49937 -36.01554 -35.56385 -34.92130 -33.29155 -32.27841 -30.80605 -30.07748 -28.73173 -28.04646 -26.21958 -25.69669 -23.55518 -22.10857 -21.58093 -21.09098 -20.02475 -19.46721 -18.33077 -18.07503 -17.63291 -17.35041 -16.76324 -16.53687 -16.38503 -15.97490 -15.78873 -15.46735 -15.13353 -14.87228 -14.52638 -14.46849 -14.17323 -13.95039 -13.67447 -13.60547 -13.57621 -13.52791 -13.16702 -13.06644 -12.97322 -12.92230 -12.54895 -12.41580 -12.39349 -12.37236 -12.16996 -12.15051 -12.10083 -12.06359 -11.50507 -10.95175 -10.74250 -10.35889 -9.99916 -9.76558 -9.14808 -8.49030 -8.46882 -5.94786 0.77241 1.35279 1.40517 1.54212 1.62985 1.65535 1.85657 2.06964 2.27395 2.68007 3.19376 3.24390 3.33851 3.51504 3.57423 3.62199 3.71246 3.96787 4.10414 4.14520 4.19840 4.26989 4.28750 4.32321 4.34135 4.45969 4.52531 4.52808 4.56717 4.61738 4.72090 4.72878 4.84304 4.86394 4.93327 4.95421 4.97361 5.06213 5.20087 5.24142 5.40965 5.78245 5.86066 6.07490 6.51720 6.61627 7.14121 7.14233 7.57694 8.14617 8.70733 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012986 B = 0.002732 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2155.575234 B =10246.925523 C =11608.164584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 S -0.298 6.298 3 C -0.035 4.035 4 H 0.071 0.929 5 C -0.141 4.141 6 C -0.113 4.113 7 C 0.519 3.481 8 O -0.563 6.563 9 N -0.623 5.623 10 C 0.060 3.940 11 C 0.058 3.942 12 H 0.167 0.833 13 C -0.117 4.117 14 C 0.107 3.893 15 H 0.117 0.883 16 C 0.047 3.953 17 N -0.510 5.510 18 C 0.053 3.947 19 C 0.439 3.561 20 O -0.618 6.618 21 N -0.576 5.576 22 C -0.330 4.330 23 H 0.075 0.925 24 C -0.012 4.012 25 N -0.919 5.919 26 Si 0.989 3.011 27 H -0.276 1.276 28 H -0.269 1.269 29 H -0.272 1.272 30 H 0.070 0.930 31 H 0.092 0.908 32 H 0.108 0.892 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.080 0.920 39 H 0.108 0.892 40 H 0.106 0.894 41 H 0.097 0.903 42 H 0.068 0.932 43 H 0.026 0.974 44 H 0.121 0.879 45 H 0.065 0.935 46 H 0.396 0.604 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.788 -16.624 -14.977 23.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 S -0.072 6.072 3 C -0.164 4.164 4 H 0.089 0.911 5 C -0.200 4.200 6 C -0.154 4.154 7 C 0.308 3.692 8 O -0.442 6.442 9 N -0.358 5.358 10 C -0.063 4.063 11 C -0.049 4.049 12 H 0.184 0.816 13 C -0.155 4.155 14 C 0.003 3.997 15 H 0.135 0.865 16 C -0.082 4.082 17 N -0.234 5.234 18 C -0.079 4.079 19 C 0.226 3.774 20 O -0.504 6.504 21 N -0.214 5.214 22 C -0.460 4.460 23 H 0.093 0.907 24 C -0.212 4.212 25 N -0.561 5.561 26 Si 0.813 3.187 27 H -0.201 1.201 28 H -0.194 1.194 29 H -0.197 1.197 30 H 0.090 0.910 31 H 0.111 0.889 32 H 0.126 0.874 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.141 0.859 37 H 0.139 0.861 38 H 0.098 0.902 39 H 0.126 0.874 40 H 0.124 0.876 41 H 0.115 0.885 42 H 0.087 0.913 43 H 0.045 0.955 44 H 0.139 0.861 45 H 0.083 0.917 46 H 0.230 0.770 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.005 -17.761 -13.611 23.448 hybrid contribution -1.745 2.180 0.330 2.812 sum -8.749 -15.581 -13.282 22.265 Atomic orbital electron populations 1.23390 0.92172 1.07072 1.05311 1.86964 1.09916 1.12511 1.97854 1.22878 0.97753 0.93543 1.02221 0.91052 1.22068 1.01912 1.01473 0.94509 1.21562 0.94478 1.04740 0.94587 1.20782 0.80440 0.78191 0.89754 1.90733 1.52695 1.47148 1.53589 1.49360 1.06329 1.61842 1.18247 1.23473 0.86388 1.00460 0.95978 1.25046 0.98100 0.91046 0.90667 0.81562 1.23895 0.93881 0.96593 1.01101 1.24028 0.94325 0.94883 0.86427 0.86507 1.23422 0.90898 0.95638 0.98217 1.64506 1.39194 1.00434 1.19226 1.21954 1.01823 0.88591 0.95498 1.20930 0.82471 0.83429 0.90531 1.90493 1.53463 1.79995 1.26420 1.41921 1.61948 1.04768 1.12768 1.19634 1.45948 0.87460 0.92941 0.90728 1.25971 0.96542 0.98951 0.99710 1.69662 1.48064 1.17155 1.21172 0.84926 0.78331 0.77673 0.77757 1.20074 1.19366 1.19724 0.91049 0.88937 0.87383 0.90315 0.90236 0.91690 0.85903 0.86117 0.90198 0.87377 0.87552 0.88459 0.91330 0.95517 0.86114 0.91704 0.77021 0.91334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.71 10.45 113.37 1.19 -0.52 16 2 S -0.30 -6.51 20.24 -56.49 -1.14 -7.65 16 3 C -0.03 -0.65 2.44 30.60 0.07 -0.58 16 4 H 0.07 1.65 7.95 -2.39 -0.02 1.63 16 5 C -0.14 -1.74 9.10 71.98 0.66 -1.08 16 6 C -0.11 -1.99 4.46 29.85 0.13 -1.86 16 7 C 0.52 13.36 7.61 87.66 0.67 14.02 16 8 O -0.56 -19.18 15.16 -3.02 -0.05 -19.22 16 9 N -0.62 -14.27 2.95 -768.32 -2.26 -16.54 16 10 C 0.06 0.99 5.63 87.17 0.49 1.48 16 11 C 0.06 1.06 5.21 46.86 0.24 1.31 16 12 H 0.17 2.07 8.14 -2.39 -0.02 2.05 16 13 C -0.12 -2.08 6.81 33.47 0.23 -1.85 16 14 C 0.11 2.67 5.22 46.94 0.25 2.91 16 15 H 0.12 3.09 8.08 -2.39 -0.02 3.07 16 16 C 0.05 1.53 5.44 87.08 0.47 2.01 16 17 N -0.51 -15.24 4.84 -844.22 -4.09 -19.33 16 18 C 0.05 1.71 4.13 85.56 0.35 2.07 16 19 C 0.44 20.86 7.63 87.66 0.67 21.52 16 20 O -0.62 -34.78 15.47 -3.06 -0.05 -34.82 16 21 N -0.58 -29.44 5.29 -306.99 -1.62 -31.06 16 22 C -0.33 -18.87 9.68 84.04 0.81 -18.05 16 23 H 0.07 4.60 7.16 -2.91 -0.02 4.58 16 24 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 25 N -0.92 -49.20 13.05 21.66 0.28 -48.92 16 26 Si 0.99 43.24 29.55 68.60 2.03 45.26 16 27 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 28 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 29 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 30 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.09 1.06 7.14 -2.39 -0.02 1.04 16 32 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 35 H 0.06 0.74 6.92 -2.39 -0.02 0.72 16 36 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.08 1.36 5.54 -2.38 -0.01 1.34 16 39 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.11 1.46 8.14 -2.38 -0.02 1.44 16 41 H 0.10 1.78 8.14 -2.38 -0.02 1.77 16 42 H 0.07 2.48 8.14 -2.38 -0.02 2.46 16 43 H 0.03 1.01 7.42 -2.39 -0.02 1.00 16 44 H 0.12 3.18 8.03 -2.38 -0.02 3.16 16 45 H 0.07 1.96 6.11 -2.39 -0.01 1.95 16 46 H 0.40 18.97 7.90 -92.71 -0.73 18.24 16 47 H 0.28 13.84 8.31 -92.70 -0.77 13.07 16 Total: -1.00 -77.74 387.30 0.05 -77.70 By element: Atomic # 1 Polarization: 33.15 SS G_CDS: 0.25 Total: 33.39 kcal Atomic # 6 Polarization: 14.49 SS G_CDS: 6.70 Total: 21.19 kcal Atomic # 7 Polarization: -108.15 SS G_CDS: -7.69 Total: -115.85 kcal Atomic # 8 Polarization: -53.95 SS G_CDS: -0.09 Total: -54.05 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 16 Polarization: -6.51 SS G_CDS: -1.14 Total: -7.65 kcal Total: -77.74 0.05 -77.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732143664.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.152 kcal (2) G-P(sol) polarization free energy of solvation -77.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds