Wall clock time and date at job start Wed Apr 1 2020 00:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50700 * 119.99934 * 2 1 4 4 N 1.46500 * 109.46871 * 124.99984 * 3 2 1 5 5 C 1.34775 * 120.00083 * 180.02562 * 4 3 2 6 6 O 1.21280 * 120.00199 * 0.02562 * 5 4 3 7 7 C 1.50705 * 120.00048 * 179.72752 * 5 4 3 8 8 H 1.09001 * 109.46934 * 319.20497 * 7 5 4 9 9 C 1.52997 * 109.47096 * 79.20999 * 7 5 4 10 10 N 1.46900 * 109.47125 * 199.20666 * 7 5 4 11 11 C 1.47484 * 111.00366 * 298.00162 * 10 7 5 12 12 C 1.53506 * 87.93088 * 221.29568 * 11 10 7 13 13 C 1.47482 * 111.00134 * 202.02742 * 10 7 5 14 14 H 1.08999 * 113.47152 * 23.93845 * 13 10 7 15 15 C 1.52996 * 113.47373 * 253.46875 * 13 10 7 16 16 N 1.46499 * 109.47065 * 57.12064 * 15 13 10 17 17 C 1.34785 * 120.00047 * 181.17371 * 16 15 13 18 18 O 1.21274 * 119.99600 * 359.97438 * 17 16 15 19 19 C 1.50698 * 119.99778 * 179.97438 * 17 16 15 20 20 S 1.80996 * 109.46922 * 179.97438 * 19 17 16 21 21 C 1.76194 * 100.00261 * 179.97438 * 20 19 17 22 22 H 1.08002 * 119.99905 * 0.02562 * 21 20 19 23 23 C 1.38800 * 120.00142 * 179.97438 * 21 20 19 24 24 N 1.31633 * 120.00166 * 0.02562 * 23 21 20 25 25 Si 1.86807 * 119.99998 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47007 * 0.02562 * 25 23 21 27 27 H 1.48495 * 109.46992 * 120.00243 * 25 23 21 28 28 H 1.48502 * 109.47029 * 240.00221 * 25 23 21 29 29 H 1.08000 * 120.00349 * 179.97438 * 1 2 3 30 30 H 1.08002 * 120.00290 * 359.97438 * 1 2 3 31 31 H 1.08002 * 120.00290 * 180.02562 * 2 1 3 32 32 H 1.08998 * 109.46999 * 5.00470 * 3 2 1 33 33 H 1.08996 * 109.47367 * 245.00186 * 3 2 1 34 34 H 0.97008 * 120.00470 * 0.02562 * 4 3 2 35 35 H 1.09003 * 109.47236 * 309.17875 * 9 7 5 36 36 H 1.08998 * 109.47739 * 69.17982 * 9 7 5 37 37 H 1.09005 * 109.46936 * 189.17939 * 9 7 5 38 38 H 1.09007 * 113.46928 * 336.06144 * 11 10 7 39 39 H 1.09004 * 113.47724 * 106.52430 * 11 10 7 40 40 H 1.09004 * 114.17245 * 139.67220 * 12 11 10 41 41 H 1.09005 * 114.17181 * 272.18371 * 12 11 10 42 42 H 1.09005 * 109.46821 * 177.11217 * 15 13 10 43 43 H 1.08998 * 109.47765 * 297.11538 * 15 13 10 44 44 H 0.96997 * 120.00433 * 1.17576 * 16 15 13 45 45 H 1.09005 * 109.47147 * 299.99666 * 19 17 16 46 46 H 1.09000 * 109.47582 * 60.00240 * 19 17 16 47 47 H 0.96995 * 119.99875 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 3.7782 2.4089 1.3335 6 8 3.7137 3.3563 0.5790 7 6 4.7307 2.4390 2.5010 8 1 4.2436 2.0134 3.3784 9 6 5.9782 1.6203 2.1626 10 7 5.1179 3.8280 2.7815 11 6 5.8237 4.4226 1.6311 12 6 6.7941 5.0673 2.6307 13 6 6.3930 3.8824 3.5205 14 1 7.0165 3.0001 3.3759 15 6 6.2274 4.2561 4.9949 16 7 5.3227 3.3025 5.6417 17 6 5.0087 3.4486 6.9443 18 8 5.4756 4.3692 7.5809 19 6 4.0776 2.4680 7.6094 20 16 3.8551 2.9297 9.3453 21 6 2.7552 1.6542 9.8627 22 1 2.4321 0.9013 9.1588 23 6 2.3046 1.6162 11.1750 24 7 2.6987 2.5334 12.0329 25 14 1.1390 0.2635 11.7236 26 1 0.8510 -0.6365 10.5780 27 1 1.7672 -0.5168 12.8197 28 1 -0.1274 0.8681 12.2093 29 1 -0.5401 -0.9353 -0.0004 30 1 -0.5401 0.9353 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3585 2.1316 0.0896 33 1 2.6212 1.4027 -0.9313 34 1 3.0450 0.5743 1.7352 35 1 5.6798 0.6376 1.7976 36 1 6.5527 2.1349 1.3925 37 1 6.5908 1.5052 3.0569 38 1 6.2953 3.6845 0.9823 39 1 5.2232 5.1466 1.0802 40 1 7.8366 5.0538 2.3127 41 1 6.4704 6.0390 3.0036 42 1 7.1990 4.2271 5.4883 43 1 5.8112 5.2606 5.0707 44 1 4.9496 2.5660 5.1326 45 1 3.1126 2.4823 7.1028 46 1 4.5034 1.4663 7.5520 47 1 2.3836 2.5071 12.9499 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733202730.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:49 Heat of formation + Delta-G solvation = -2.042077 kcal Electronic energy + Delta-G solvation = -27209.435488 eV Core-core repulsion = 23327.878544 eV Total energy + Delta-G solvation = -3881.556944 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.59486 -39.51257 -38.76279 -36.17161 -34.29551 -33.72833 -32.65760 -32.41803 -30.04810 -28.08679 -27.33070 -27.01008 -25.46552 -23.91336 -23.17175 -21.06268 -20.40518 -20.31372 -19.32375 -17.86021 -17.57630 -17.32644 -16.42089 -16.28814 -15.99811 -15.71136 -15.23860 -14.96591 -14.80211 -14.78932 -14.36089 -14.20902 -13.90766 -13.68201 -13.47626 -13.11816 -13.08458 -12.78009 -12.62622 -12.56088 -12.17712 -11.90713 -11.65883 -11.60179 -11.51389 -11.24088 -11.06874 -11.00820 -10.97987 -10.73751 -10.30251 -9.84913 -9.78752 -9.44619 -9.35132 -9.08509 -9.06671 -8.77912 -8.20761 -6.47973 -6.20720 -3.90773 1.57192 2.26675 2.82396 3.05264 3.17057 3.21760 3.28324 3.32519 3.59349 3.83454 4.11473 4.21187 4.27617 4.33381 4.36079 4.51858 4.58584 4.66068 4.77654 4.83071 4.97031 5.06014 5.13568 5.14389 5.24407 5.25275 5.27689 5.36011 5.43963 5.48976 5.58879 5.65589 5.76708 5.87088 5.90904 5.92840 5.98306 6.02485 6.03530 6.15138 6.18349 6.65269 6.69862 7.08172 7.60511 7.76387 7.84609 8.36213 8.68023 9.24590 10.86782 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008949 B = 0.002713 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3128.220199 B =10318.483797 C =13040.106336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.182 4.182 3 C 0.148 3.852 4 N -0.728 5.728 5 C 0.524 3.476 6 O -0.525 6.525 7 C 0.023 3.977 8 H 0.107 0.893 9 C -0.188 4.188 10 N -0.442 5.442 11 C 0.012 3.988 12 C -0.140 4.140 13 C 0.002 3.998 14 H 0.099 0.901 15 C 0.140 3.860 16 N -0.732 5.732 17 C 0.531 3.469 18 O -0.518 6.518 19 C -0.153 4.153 20 S -0.060 6.060 21 C -0.535 4.535 22 H 0.072 0.928 23 C 0.073 3.927 24 N -0.867 5.867 25 Si 0.918 3.082 26 H -0.272 1.272 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.104 0.896 30 H 0.101 0.899 31 H 0.116 0.884 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.403 0.597 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.094 0.906 40 H 0.079 0.921 41 H 0.098 0.902 42 H 0.070 0.930 43 H 0.073 0.927 44 H 0.392 0.608 45 H 0.088 0.912 46 H 0.087 0.913 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.704 -5.430 -27.766 28.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.200 4.200 3 C 0.025 3.975 4 N -0.381 5.381 5 C 0.309 3.691 6 O -0.400 6.400 7 C -0.089 4.089 8 H 0.125 0.875 9 C -0.247 4.247 10 N -0.165 5.165 11 C -0.116 4.116 12 C -0.178 4.178 13 C -0.108 4.108 14 H 0.116 0.884 15 C 0.016 3.984 16 N -0.387 5.387 17 C 0.317 3.683 18 O -0.392 6.392 19 C -0.304 4.304 20 S 0.167 5.833 21 C -0.683 4.683 22 H 0.091 0.909 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.197 1.197 27 H -0.206 1.206 28 H -0.206 1.206 29 H 0.123 0.877 30 H 0.119 0.881 31 H 0.133 0.867 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.237 0.763 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.099 0.901 38 H 0.090 0.910 39 H 0.112 0.888 40 H 0.097 0.903 41 H 0.116 0.884 42 H 0.088 0.912 43 H 0.091 0.909 44 H 0.226 0.774 45 H 0.106 0.894 46 H 0.106 0.894 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.795 -2.821 -26.809 27.380 hybrid contribution -0.981 -3.361 -0.667 3.564 sum 3.814 -6.181 -27.476 28.420 Atomic orbital electron populations 1.24027 0.95811 1.02622 0.97392 1.22978 0.96289 0.97981 1.02740 1.20394 0.91774 0.95757 0.89550 1.45979 1.40991 1.20092 1.31051 1.20360 0.80661 0.82105 0.85934 1.90708 1.67633 1.34695 1.46988 1.22220 0.95974 0.93254 0.97474 0.87494 1.22517 0.97941 1.00810 1.03398 1.69257 1.24338 1.11955 1.10967 1.23686 0.94987 0.99028 0.93887 1.23243 0.99821 0.98310 0.96451 1.24082 0.91954 0.99988 0.94731 0.88390 1.21245 0.94114 0.93876 0.89199 1.45893 1.50395 1.31473 1.10908 1.20275 0.81147 0.85819 0.81074 1.90699 1.52600 1.32569 1.63372 1.23524 1.00580 1.00821 1.05447 1.85414 1.61546 1.39414 0.96925 1.22906 1.32505 1.14207 0.98665 0.90942 1.24995 0.96483 0.96627 0.95521 1.70029 1.42649 1.33036 1.04549 0.86122 0.79998 0.80786 0.78606 1.19658 1.20586 1.20562 0.87737 0.88055 0.86653 0.90951 0.90753 0.76313 0.91072 0.90859 0.90085 0.91032 0.88798 0.90277 0.88387 0.91226 0.90887 0.77448 0.89354 0.89434 0.92247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.84 14.32 29.02 0.42 -0.42 16 2 C -0.18 -0.97 9.63 -36.02 -0.35 -1.31 16 3 C 0.15 1.04 6.11 -5.19 -0.03 1.01 16 4 N -0.73 -5.20 5.55 -61.47 -0.34 -5.54 16 5 C 0.52 5.06 6.97 -10.98 -0.08 4.99 16 6 O -0.53 -6.88 14.38 5.56 0.08 -6.80 16 7 C 0.02 0.19 2.79 -68.86 -0.19 0.00 16 8 H 0.11 0.79 6.77 -51.93 -0.35 0.44 16 9 C -0.19 -1.07 7.85 37.16 0.29 -0.78 16 10 N -0.44 -4.41 6.05 -229.88 -1.39 -5.80 16 11 C 0.01 0.11 5.54 -7.54 -0.04 0.07 16 12 C -0.14 -1.10 8.00 -26.20 -0.21 -1.31 16 13 C 0.00 0.02 3.00 -71.43 -0.21 -0.20 16 14 H 0.10 0.68 4.95 -51.93 -0.26 0.43 16 15 C 0.14 1.68 5.79 -4.04 -0.02 1.66 16 16 N -0.73 -10.05 5.48 -60.30 -0.33 -10.38 16 17 C 0.53 10.11 7.85 -10.98 -0.09 10.02 16 18 O -0.52 -12.02 15.86 5.56 0.09 -11.93 16 19 C -0.15 -3.12 6.16 36.00 0.22 -2.89 16 20 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 21 C -0.53 -15.25 9.50 30.94 0.29 -14.96 16 22 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 23 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 24 N -0.87 -26.25 13.22 55.49 0.73 -25.51 16 25 Si 0.92 21.37 29.55 -169.99 -5.02 16.35 16 26 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 27 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 28 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 29 H 0.10 0.43 8.06 -52.49 -0.42 0.01 16 30 H 0.10 0.53 7.84 -52.49 -0.41 0.12 16 31 H 0.12 0.48 8.06 -52.49 -0.42 0.05 16 32 H 0.07 0.60 7.79 -51.93 -0.40 0.19 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.40 1.95 8.46 -40.82 -0.35 1.61 16 35 H 0.07 0.32 8.12 -51.93 -0.42 -0.11 16 36 H 0.07 0.44 5.70 -51.93 -0.30 0.14 16 37 H 0.08 0.42 6.35 -51.93 -0.33 0.09 16 38 H 0.07 0.59 5.64 -51.93 -0.29 0.29 16 39 H 0.09 1.03 7.67 -51.93 -0.40 0.63 16 40 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.10 0.83 7.97 -51.93 -0.41 0.42 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.07 1.00 7.92 -51.93 -0.41 0.59 16 44 H 0.39 4.34 6.54 -40.82 -0.27 4.08 16 45 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 46 H 0.09 1.62 8.14 -51.92 -0.42 1.19 16 47 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 395.62 15.07 5.96 5.96 Total: -1.00 -36.98 395.62 -9.63 -46.61 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -7.10 Total: 3.01 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: -0.10 Total: -2.14 kcal Atomic # 7 Polarization: -45.90 SS G_CDS: -1.33 Total: -47.23 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: 0.17 Total: -18.73 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.98 -9.63 -46.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733202730.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.572 kcal (2) G-P(sol) polarization free energy of solvation -36.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds