Wall clock time and date at job start Wed Apr 1 2020 00:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50700 * 119.99934 * 2 1 4 4 N 1.46500 * 109.46871 * 124.99984 * 3 2 1 5 5 C 1.34775 * 120.00083 * 180.02562 * 4 3 2 6 6 O 1.21280 * 120.00199 * 0.02562 * 5 4 3 7 7 C 1.50705 * 120.00048 * 179.72752 * 5 4 3 8 8 H 1.09001 * 109.46934 * 319.20497 * 7 5 4 9 9 C 1.52997 * 109.47096 * 79.20999 * 7 5 4 10 10 N 1.46900 * 109.47125 * 199.20666 * 7 5 4 11 11 C 1.47484 * 111.00366 * 298.00162 * 10 7 5 12 12 C 1.53506 * 87.93088 * 221.29568 * 11 10 7 13 13 C 1.47482 * 111.00134 * 202.02742 * 10 7 5 14 14 H 1.08999 * 113.47152 * 23.93845 * 13 10 7 15 15 C 1.52996 * 113.47373 * 253.46875 * 13 10 7 16 16 N 1.46499 * 109.47065 * 57.12064 * 15 13 10 17 17 C 1.34785 * 120.00047 * 181.17371 * 16 15 13 18 18 O 1.21274 * 119.99600 * 359.97438 * 17 16 15 19 19 C 1.50698 * 119.99778 * 179.97438 * 17 16 15 20 20 S 1.80996 * 109.46922 * 179.97438 * 19 17 16 21 21 C 1.76194 * 100.00261 * 179.97438 * 20 19 17 22 22 H 1.08002 * 119.99905 * 0.02562 * 21 20 19 23 23 C 1.38800 * 120.00142 * 179.97438 * 21 20 19 24 24 N 1.31633 * 120.00166 * 0.02562 * 23 21 20 25 25 Si 1.86807 * 119.99998 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47007 * 0.02562 * 25 23 21 27 27 H 1.48495 * 109.46992 * 120.00243 * 25 23 21 28 28 H 1.48502 * 109.47029 * 240.00221 * 25 23 21 29 29 H 1.08000 * 120.00349 * 179.97438 * 1 2 3 30 30 H 1.08002 * 120.00290 * 359.97438 * 1 2 3 31 31 H 1.08002 * 120.00290 * 180.02562 * 2 1 3 32 32 H 1.08998 * 109.46999 * 5.00470 * 3 2 1 33 33 H 1.08996 * 109.47367 * 245.00186 * 3 2 1 34 34 H 0.97008 * 120.00470 * 0.02562 * 4 3 2 35 35 H 1.09003 * 109.47236 * 309.17875 * 9 7 5 36 36 H 1.08998 * 109.47739 * 69.17982 * 9 7 5 37 37 H 1.09005 * 109.46936 * 189.17939 * 9 7 5 38 38 H 1.09007 * 113.46928 * 336.06144 * 11 10 7 39 39 H 1.09004 * 113.47724 * 106.52430 * 11 10 7 40 40 H 1.09004 * 114.17245 * 139.67220 * 12 11 10 41 41 H 1.09005 * 114.17181 * 272.18371 * 12 11 10 42 42 H 1.09005 * 109.46821 * 177.11217 * 15 13 10 43 43 H 1.08998 * 109.47765 * 297.11538 * 15 13 10 44 44 H 0.96997 * 120.00433 * 1.17576 * 16 15 13 45 45 H 1.09005 * 109.47147 * 299.99666 * 19 17 16 46 46 H 1.09000 * 109.47582 * 60.00240 * 19 17 16 47 47 H 0.96995 * 119.99875 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 3.7782 2.4089 1.3335 6 8 3.7137 3.3563 0.5790 7 6 4.7307 2.4390 2.5010 8 1 4.2436 2.0134 3.3784 9 6 5.9782 1.6203 2.1626 10 7 5.1179 3.8280 2.7815 11 6 5.8237 4.4226 1.6311 12 6 6.7941 5.0673 2.6307 13 6 6.3930 3.8824 3.5205 14 1 7.0165 3.0001 3.3759 15 6 6.2274 4.2561 4.9949 16 7 5.3227 3.3025 5.6417 17 6 5.0087 3.4486 6.9443 18 8 5.4756 4.3692 7.5809 19 6 4.0776 2.4680 7.6094 20 16 3.8551 2.9297 9.3453 21 6 2.7552 1.6542 9.8627 22 1 2.4321 0.9013 9.1588 23 6 2.3046 1.6162 11.1750 24 7 2.6987 2.5334 12.0329 25 14 1.1390 0.2635 11.7236 26 1 0.8510 -0.6365 10.5780 27 1 1.7672 -0.5168 12.8197 28 1 -0.1274 0.8681 12.2093 29 1 -0.5401 -0.9353 -0.0004 30 1 -0.5401 0.9353 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3585 2.1316 0.0896 33 1 2.6212 1.4027 -0.9313 34 1 3.0450 0.5743 1.7352 35 1 5.6798 0.6376 1.7976 36 1 6.5527 2.1349 1.3925 37 1 6.5908 1.5052 3.0569 38 1 6.2953 3.6845 0.9823 39 1 5.2232 5.1466 1.0802 40 1 7.8366 5.0538 2.3127 41 1 6.4704 6.0390 3.0036 42 1 7.1990 4.2271 5.4883 43 1 5.8112 5.2606 5.0707 44 1 4.9496 2.5660 5.1326 45 1 3.1126 2.4823 7.1028 46 1 4.5034 1.4663 7.5520 47 1 2.3836 2.5071 12.9499 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733202730.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:48 Heat of formation + Delta-G solvation = -32.236011 kcal Electronic energy + Delta-G solvation = -27210.744795 eV Core-core repulsion = 23327.878544 eV Total energy + Delta-G solvation = -3882.866251 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.31551 -40.54798 -39.93838 -36.78660 -35.58252 -34.57039 -34.37437 -33.21970 -31.47767 -28.98208 -28.22751 -27.61876 -27.55492 -24.56271 -24.01977 -21.82008 -21.66081 -20.88044 -20.17170 -19.68763 -18.22394 -18.11455 -17.71960 -17.29956 -16.88462 -16.86823 -16.58591 -16.41700 -15.87141 -15.65541 -15.50999 -15.10152 -15.05807 -14.62282 -14.44728 -14.21950 -14.09659 -13.92040 -13.46011 -13.33230 -13.17798 -13.14640 -12.90335 -12.88038 -12.59123 -12.39322 -12.13972 -12.08219 -11.91057 -11.79739 -11.65486 -11.14761 -10.97736 -10.81838 -10.47806 -10.25225 -10.08055 -10.06303 -9.75584 -8.65278 -8.33430 -6.11369 1.13487 1.28314 1.42563 1.48589 1.55524 1.59234 1.65061 2.21217 2.27185 2.31187 2.98943 3.00858 3.34041 3.47715 3.66207 3.73318 3.83554 3.93605 3.98011 4.06000 4.12193 4.14131 4.22542 4.30506 4.33442 4.50763 4.52252 4.52765 4.65484 4.71897 4.83606 4.85208 4.92963 4.97243 5.02220 5.09904 5.26102 5.31079 5.33548 5.43313 5.48784 5.61684 5.74720 5.99529 6.21350 6.49879 6.51185 7.07917 7.18943 7.26898 8.76103 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008949 B = 0.002713 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3128.220199 B =10318.483797 C =13040.106336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.180 4.180 3 C 0.148 3.852 4 N -0.716 5.716 5 C 0.518 3.482 6 O -0.567 6.567 7 C 0.023 3.977 8 H 0.116 0.884 9 C -0.183 4.183 10 N -0.471 5.471 11 C 0.017 3.983 12 C -0.132 4.132 13 C 0.014 3.986 14 H 0.126 0.874 15 C 0.139 3.861 16 N -0.705 5.705 17 C 0.532 3.468 18 O -0.567 6.567 19 C -0.129 4.129 20 S -0.153 6.153 21 C -0.544 4.544 22 H 0.084 0.916 23 C 0.012 3.988 24 N -0.912 5.912 25 Si 1.000 3.000 26 H -0.255 1.255 27 H -0.274 1.274 28 H -0.276 1.276 29 H 0.119 0.881 30 H 0.095 0.905 31 H 0.133 0.867 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.416 0.584 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.093 0.907 38 H 0.084 0.916 39 H 0.067 0.933 40 H 0.104 0.896 41 H 0.086 0.914 42 H 0.073 0.927 43 H 0.052 0.948 44 H 0.408 0.592 45 H 0.105 0.895 46 H 0.113 0.887 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.785 -8.443 -29.214 30.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.198 4.198 3 C 0.025 3.975 4 N -0.369 5.369 5 C 0.305 3.695 6 O -0.446 6.446 7 C -0.090 4.090 8 H 0.134 0.866 9 C -0.241 4.241 10 N -0.195 5.195 11 C -0.111 4.111 12 C -0.170 4.170 13 C -0.095 4.095 14 H 0.143 0.857 15 C 0.014 3.986 16 N -0.359 5.359 17 C 0.317 3.683 18 O -0.446 6.446 19 C -0.280 4.280 20 S 0.074 5.926 21 C -0.692 4.692 22 H 0.102 0.898 23 C -0.193 4.193 24 N -0.549 5.549 25 Si 0.821 3.179 26 H -0.178 1.178 27 H -0.199 1.199 28 H -0.201 1.201 29 H 0.137 0.863 30 H 0.114 0.886 31 H 0.151 0.849 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.252 0.748 35 H 0.105 0.895 36 H 0.090 0.910 37 H 0.111 0.889 38 H 0.102 0.898 39 H 0.086 0.914 40 H 0.123 0.877 41 H 0.105 0.895 42 H 0.092 0.908 43 H 0.070 0.930 44 H 0.245 0.755 45 H 0.124 0.876 46 H 0.131 0.869 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.872 -5.889 -28.309 29.323 hybrid contribution -1.014 -2.390 -0.362 2.621 sum 3.859 -8.278 -28.672 30.091 Atomic orbital electron populations 1.24177 0.95950 1.03100 0.96965 1.22969 0.96244 0.97586 1.03042 1.20369 0.91504 0.96300 0.89361 1.45922 1.40038 1.19902 1.31027 1.20744 0.80882 0.81935 0.85967 1.90696 1.69008 1.36287 1.48574 1.22294 0.96848 0.92801 0.97018 0.86635 1.22501 0.96645 1.01063 1.03937 1.69199 1.25129 1.13503 1.11625 1.23591 0.94818 0.98896 0.93800 1.23228 1.00965 0.97416 0.95421 1.24074 0.91995 1.01382 0.92017 0.85679 1.21395 0.93415 0.92445 0.91306 1.45644 1.49424 1.31770 1.09048 1.20083 0.80798 0.84929 0.82461 1.90689 1.54555 1.34421 1.64890 1.23363 1.02168 1.02219 1.00233 1.85622 1.62207 1.41131 1.03613 1.23235 1.32436 1.14179 0.99327 0.89809 1.26147 0.98282 0.99315 0.95524 1.70196 1.44281 1.35349 1.05056 0.84895 0.77151 0.77310 0.78515 1.17842 1.19910 1.20107 0.86317 0.88631 0.84890 0.92750 0.91223 0.74757 0.89459 0.90965 0.88876 0.89826 0.91411 0.87737 0.89533 0.90850 0.92994 0.75486 0.87638 0.86903 0.92032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 14.32 67.79 0.97 -0.50 16 2 C -0.18 -1.61 9.63 25.65 0.25 -1.36 16 3 C 0.15 1.97 6.11 85.63 0.52 2.50 16 4 N -0.72 -9.11 5.55 -466.79 -2.59 -11.70 16 5 C 0.52 9.42 6.97 87.66 0.61 10.03 16 6 O -0.57 -14.93 14.38 -3.03 -0.04 -14.98 16 7 C 0.02 0.31 2.79 44.17 0.12 0.44 16 8 H 0.12 1.36 6.77 -2.39 -0.02 1.34 16 9 C -0.18 -1.43 7.85 71.98 0.56 -0.86 16 10 N -0.47 -8.67 6.05 -881.21 -5.33 -14.00 16 11 C 0.02 0.30 5.54 83.58 0.46 0.76 16 12 C -0.13 -1.85 8.00 30.94 0.25 -1.61 16 13 C 0.01 0.21 3.00 42.19 0.13 0.34 16 14 H 0.13 1.24 4.95 -2.39 -0.01 1.23 16 15 C 0.14 3.12 5.79 86.38 0.50 3.62 16 16 N -0.71 -17.98 5.48 -463.06 -2.54 -20.52 16 17 C 0.53 19.83 7.85 87.66 0.69 20.51 16 18 O -0.57 -26.74 15.86 -3.01 -0.05 -26.79 16 19 C -0.13 -5.08 6.16 71.24 0.44 -4.64 16 20 S -0.15 -8.52 20.57 -56.49 -1.16 -9.69 16 21 C -0.54 -30.91 9.50 67.95 0.65 -30.27 16 22 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 23 C 0.01 0.67 5.49 84.86 0.47 1.14 16 24 N -0.91 -56.15 13.22 21.65 0.29 -55.87 16 25 Si 1.00 43.28 29.55 68.60 2.03 45.31 16 26 H -0.25 -10.21 7.11 99.48 0.71 -9.50 16 27 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 28 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 29 H 0.12 0.73 8.06 -2.91 -0.02 0.71 16 30 H 0.10 0.95 7.84 -2.91 -0.02 0.92 16 31 H 0.13 0.73 8.06 -2.91 -0.02 0.71 16 32 H 0.05 0.92 7.79 -2.39 -0.02 0.90 16 33 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.42 2.98 8.46 -92.70 -0.78 2.20 16 35 H 0.09 0.43 8.12 -2.39 -0.02 0.41 16 36 H 0.07 0.62 5.70 -2.39 -0.01 0.60 16 37 H 0.09 0.53 6.35 -2.38 -0.02 0.52 16 38 H 0.08 1.22 5.64 -2.38 -0.01 1.21 16 39 H 0.07 1.53 7.67 -2.39 -0.02 1.51 16 40 H 0.10 0.96 8.14 -2.38 -0.02 0.94 16 41 H 0.09 1.43 7.97 -2.38 -0.02 1.41 16 42 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 43 H 0.05 1.42 7.92 -2.39 -0.02 1.41 16 44 H 0.41 7.78 6.54 -92.71 -0.61 7.18 16 45 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 46 H 0.11 3.89 8.14 -2.40 -0.02 3.87 16 47 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -83.69 395.62 -3.17 -86.86 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: -0.39 Total: 21.26 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: 6.61 Total: 0.10 kcal Atomic # 7 Polarization: -91.91 SS G_CDS: -10.17 Total: -102.08 kcal Atomic # 8 Polarization: -41.67 SS G_CDS: -0.09 Total: -41.76 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Atomic # 16 Polarization: -8.52 SS G_CDS: -1.16 Total: -9.69 kcal Total: -83.69 -3.17 -86.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733202730.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.626 kcal (2) G-P(sol) polarization free energy of solvation -83.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds