Wall clock time and date at job start Wed Apr 1 2020 00:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50706 * 120.00004 * 2 1 4 4 N 1.46499 * 109.47135 * 124.99805 * 3 2 1 5 5 C 1.34779 * 119.99750 * 179.97438 * 4 3 2 6 6 O 1.21276 * 120.00177 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.99687 * 180.02562 * 5 4 3 8 8 H 1.08995 * 109.47374 * 60.00109 * 7 5 4 9 9 C 1.52998 * 109.47040 * 299.99824 * 7 5 4 10 10 N 1.46901 * 109.46850 * 180.02562 * 7 5 4 11 11 C 1.47954 * 111.00245 * 82.17624 * 10 7 5 12 12 C 1.53937 * 86.17958 * 137.58182 * 11 10 7 13 13 C 1.47962 * 111.00120 * 181.54081 * 10 7 5 14 14 H 1.09007 * 113.85593 * 336.74808 * 13 10 7 15 15 C 1.52993 * 113.76178 * 108.09584 * 13 10 7 16 16 N 1.46501 * 109.47388 * 301.06791 * 15 13 10 17 17 C 1.34776 * 120.00243 * 180.02562 * 16 15 13 18 18 O 1.21274 * 119.99938 * 359.97438 * 17 16 15 19 19 C 1.50701 * 119.99891 * 180.02562 * 17 16 15 20 20 S 1.81001 * 109.46805 * 180.02562 * 19 17 16 21 21 C 1.76200 * 99.99799 * 179.97438 * 20 19 17 22 22 H 1.08000 * 120.00354 * 359.97438 * 21 20 19 23 23 C 1.38800 * 119.99979 * 179.97438 * 21 20 19 24 24 N 1.31626 * 120.00032 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00116 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47415 * 59.99942 * 25 23 21 27 27 H 1.48494 * 109.47391 * 180.02562 * 25 23 21 28 28 H 1.48506 * 109.47169 * 300.00012 * 25 23 21 29 29 H 1.07999 * 119.99949 * 180.02562 * 1 2 3 30 30 H 1.07998 * 120.00108 * 0.02562 * 1 2 3 31 31 H 1.07998 * 120.00108 * 179.97438 * 2 1 3 32 32 H 1.08995 * 109.46976 * 4.99942 * 3 2 1 33 33 H 1.09000 * 109.46951 * 245.00002 * 3 2 1 34 34 H 0.97000 * 119.99918 * 0.02562 * 4 3 2 35 35 H 1.08997 * 109.47041 * 310.00353 * 9 7 5 36 36 H 1.09002 * 109.47049 * 70.00060 * 9 7 5 37 37 H 1.08997 * 109.47206 * 190.00307 * 9 7 5 38 38 H 1.09006 * 113.75870 * 23.26767 * 11 10 7 39 39 H 1.08992 * 113.86418 * 251.91284 * 11 10 7 40 40 H 1.09007 * 113.73312 * 221.92405 * 12 11 10 41 41 H 1.08995 * 113.83079 * 90.65724 * 12 11 10 42 42 H 1.08998 * 109.47405 * 181.06697 * 15 13 10 43 43 H 1.08997 * 109.47029 * 61.06809 * 15 13 10 44 44 H 0.97004 * 119.99598 * 359.97438 * 16 15 13 45 45 H 1.08997 * 109.47192 * 299.99857 * 19 17 16 46 46 H 1.09000 * 109.47362 * 60.00422 * 19 17 16 47 47 H 0.97001 * 120.00345 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3320 1.1314 5 6 3.7789 2.4087 1.3328 6 8 3.7151 3.3556 0.5777 7 6 4.7363 2.4361 2.4964 8 1 5.4409 1.6094 2.4067 9 6 3.9537 2.2995 3.8040 10 7 5.4707 3.7083 2.4964 11 6 4.6718 4.7817 3.1278 12 6 5.9795 5.2066 3.8198 13 6 6.4484 3.7562 3.6059 14 1 6.2078 3.0901 4.4346 15 6 7.9042 3.6398 3.1501 16 7 8.0916 2.3767 2.4319 17 6 9.3031 2.0571 1.9354 18 8 10.2381 2.8153 2.0828 19 6 9.4957 0.7580 1.1962 20 16 11.2184 0.6196 0.6583 21 6 11.1611 -0.9437 -0.1525 22 1 10.2343 -1.4967 -0.1943 23 6 12.3070 -1.4645 -0.7375 24 7 13.4364 -0.7903 -0.6869 25 14 12.2461 -3.1215 -1.5977 26 1 11.2680 -3.0644 -2.7135 27 1 13.5911 -3.4505 -2.1342 28 1 11.8309 -4.1674 -0.6286 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3586 2.1316 0.0896 33 1 2.6213 1.4026 -0.9314 34 1 3.0450 0.5745 1.7352 35 1 3.1328 3.0165 3.8127 36 1 3.5539 1.2886 3.8843 37 1 4.6167 2.4960 4.6465 38 1 3.9099 4.4153 3.8159 39 1 4.2885 5.5190 2.4226 40 1 5.8534 5.4769 4.8683 41 1 6.5563 5.9415 3.2582 42 1 8.5604 3.6638 4.0201 43 1 8.1458 4.4725 2.4897 44 1 7.3438 1.7701 2.3143 45 1 9.2534 -0.0749 1.8561 46 1 8.8400 0.7347 0.3257 47 1 14.2373 -1.1544 -1.0954 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733202731.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:51 Heat of formation + Delta-G solvation = -5.051218 kcal Electronic energy + Delta-G solvation = -27172.409451 eV Core-core repulsion = 23290.722021 eV Total energy + Delta-G solvation = -3881.687430 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.33792 -39.46766 -38.75859 -36.11280 -34.39257 -33.68226 -32.57043 -32.40176 -30.01366 -27.92733 -27.57465 -26.87698 -25.45068 -23.86109 -23.40210 -20.98944 -20.40279 -20.23496 -19.31544 -17.84385 -17.60086 -17.24610 -16.46801 -16.16976 -15.93130 -15.60604 -15.43442 -15.17046 -14.78269 -14.65253 -14.33668 -14.08886 -13.93313 -13.81569 -13.44396 -13.11199 -13.06059 -12.81417 -12.64082 -12.55600 -11.99896 -11.90271 -11.66146 -11.59461 -11.52759 -11.27117 -11.04704 -11.01916 -11.01463 -10.73845 -10.35103 -9.86958 -9.79539 -9.37231 -9.34813 -9.03800 -9.01237 -8.77349 -8.20063 -6.46249 -6.18721 -3.88899 1.57671 2.38469 2.81884 3.06145 3.18480 3.24891 3.28616 3.31564 3.52267 3.80925 4.14615 4.23099 4.27416 4.30741 4.35808 4.49778 4.56294 4.59949 4.76677 4.80636 4.90549 5.09128 5.10230 5.15998 5.16467 5.25608 5.32727 5.35758 5.40925 5.47458 5.53876 5.63039 5.68682 5.85329 5.92236 5.95812 5.96924 6.01384 6.02858 6.17456 6.20479 6.61579 6.70311 7.16244 7.61590 7.77068 7.96150 8.37568 8.69050 9.26199 10.88675 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008919 B = 0.002734 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3138.629854 B =10237.492408 C =12939.407251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.176 4.176 3 C 0.147 3.853 4 N -0.732 5.732 5 C 0.521 3.479 6 O -0.514 6.514 7 C 0.026 3.974 8 H 0.106 0.894 9 C -0.186 4.186 10 N -0.443 5.443 11 C -0.005 4.005 12 C -0.133 4.133 13 C 0.012 3.988 14 H 0.091 0.909 15 C 0.142 3.858 16 N -0.732 5.732 17 C 0.532 3.468 18 O -0.518 6.518 19 C -0.153 4.153 20 S -0.059 6.059 21 C -0.536 4.536 22 H 0.071 0.929 23 C 0.073 3.927 24 N -0.868 5.868 25 Si 0.918 3.082 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.117 0.883 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.400 0.600 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.093 0.907 40 H 0.076 0.924 41 H 0.097 0.903 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.392 0.608 45 H 0.087 0.913 46 H 0.088 0.912 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.034 4.789 11.014 30.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.194 4.194 3 C 0.024 3.976 4 N -0.385 5.385 5 C 0.306 3.694 6 O -0.387 6.387 7 C -0.087 4.087 8 H 0.124 0.876 9 C -0.244 4.244 10 N -0.166 5.166 11 C -0.133 4.133 12 C -0.172 4.172 13 C -0.097 4.097 14 H 0.108 0.892 15 C 0.018 3.982 16 N -0.386 5.386 17 C 0.318 3.682 18 O -0.393 6.393 19 C -0.304 4.304 20 S 0.168 5.832 21 C -0.684 4.684 22 H 0.089 0.911 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.200 1.200 27 H -0.208 1.208 28 H -0.200 1.200 29 H 0.122 0.878 30 H 0.118 0.882 31 H 0.135 0.865 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.234 0.766 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.111 0.889 40 H 0.095 0.905 41 H 0.115 0.885 42 H 0.089 0.911 43 H 0.092 0.908 44 H 0.225 0.775 45 H 0.106 0.894 46 H 0.107 0.893 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -26.084 6.850 9.947 28.744 hybrid contribution -1.880 -3.056 0.171 3.592 sum -27.963 3.794 10.118 29.978 Atomic orbital electron populations 1.23978 0.95770 1.02416 0.98315 1.23034 0.96254 0.98213 1.01911 1.20394 0.91739 0.95436 0.90022 1.45987 1.41391 1.20154 1.31010 1.20337 0.80549 0.82400 0.86091 1.90730 1.66713 1.35140 1.46157 1.22177 0.96162 0.96937 0.93392 0.87628 1.22497 1.01448 1.03311 0.97159 1.68713 1.08677 1.02056 1.37132 1.24085 0.96053 0.95306 0.97850 1.23330 0.96762 0.95743 1.01339 1.23935 0.93842 0.98338 0.93590 0.89182 1.21191 0.92908 0.87430 0.96698 1.45876 1.11644 1.21989 1.59134 1.20267 0.81956 0.87772 0.78236 1.90697 1.40279 1.51371 1.56915 1.23524 1.08065 0.96587 1.02197 1.85395 1.00081 1.26774 1.70957 1.22827 0.98790 1.05287 1.41490 0.91052 1.24987 0.94552 0.98273 0.95769 1.70007 1.00058 1.37813 1.42408 0.86231 0.77465 0.82290 0.79548 1.19950 1.20814 1.19982 0.87831 0.88223 0.86520 0.91173 0.90457 0.76577 0.91020 0.91066 0.90569 0.90137 0.88879 0.90497 0.88461 0.91051 0.90831 0.77450 0.89447 0.89341 0.92144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.79 14.32 29.02 0.42 -0.38 16 2 C -0.18 -0.97 9.63 -36.02 -0.35 -1.32 16 3 C 0.15 1.11 6.11 -5.19 -0.03 1.08 16 4 N -0.73 -5.40 5.45 -61.47 -0.34 -5.74 16 5 C 0.52 5.36 7.06 -10.98 -0.08 5.28 16 6 O -0.51 -7.58 16.16 5.56 0.09 -7.49 16 7 C 0.03 0.21 2.71 -68.86 -0.19 0.02 16 8 H 0.11 0.79 6.40 -51.93 -0.33 0.45 16 9 C -0.19 -0.93 7.67 37.16 0.29 -0.64 16 10 N -0.44 -4.38 5.43 -224.15 -1.22 -5.60 16 11 C 0.00 -0.04 7.26 -2.77 -0.02 -0.06 16 12 C -0.13 -0.98 7.84 -25.80 -0.20 -1.18 16 13 C 0.01 0.10 3.18 -66.66 -0.21 -0.11 16 14 H 0.09 0.60 5.95 -51.92 -0.31 0.29 16 15 C 0.14 1.72 5.80 -4.04 -0.02 1.70 16 16 N -0.73 -10.36 5.50 -60.30 -0.33 -10.69 16 17 C 0.53 10.35 7.85 -10.99 -0.09 10.26 16 18 O -0.52 -12.18 15.86 5.56 0.09 -12.09 16 19 C -0.15 -3.19 6.16 36.01 0.22 -2.97 16 20 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 21 C -0.54 -15.47 9.50 30.94 0.29 -15.17 16 22 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 23 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 24 N -0.87 -26.46 13.22 55.49 0.73 -25.73 16 25 Si 0.92 21.59 29.55 -169.99 -5.02 16.56 16 26 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 27 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 28 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 29 H 0.10 0.38 8.06 -52.49 -0.42 -0.04 16 30 H 0.10 0.44 7.84 -52.49 -0.41 0.03 16 31 H 0.12 0.57 8.06 -52.49 -0.42 0.14 16 32 H 0.07 0.56 7.79 -51.93 -0.40 0.15 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.40 1.89 8.10 -40.82 -0.33 1.56 16 35 H 0.07 0.38 6.36 -51.93 -0.33 0.05 16 36 H 0.07 0.24 7.86 -51.93 -0.41 -0.17 16 37 H 0.08 0.34 5.91 -51.93 -0.31 0.03 16 38 H 0.08 0.51 5.00 -51.93 -0.26 0.25 16 39 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.10 0.79 7.94 -51.93 -0.41 0.38 16 42 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.07 1.02 7.91 -51.93 -0.41 0.61 16 44 H 0.39 4.57 6.51 -40.82 -0.27 4.31 16 45 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 46 H 0.09 1.75 8.14 -51.92 -0.42 1.32 16 47 H 0.27 7.62 8.31 -40.82 -0.34 7.29 16 LS Contribution 398.31 15.07 6.00 6.00 Total: -1.00 -37.97 398.31 -9.38 -47.35 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -7.11 Total: 2.71 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: -0.07 Total: -1.45 kcal Atomic # 7 Polarization: -46.61 SS G_CDS: -1.15 Total: -47.76 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: 0.18 Total: -19.57 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -37.97 -9.38 -47.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733202731.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.299 kcal (2) G-P(sol) polarization free energy of solvation -37.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds