Wall clock time and date at job start Wed Apr 1 2020 00:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50706 * 120.00004 * 2 1 4 4 N 1.46499 * 109.47135 * 124.99805 * 3 2 1 5 5 C 1.34779 * 119.99750 * 179.97438 * 4 3 2 6 6 O 1.21276 * 120.00177 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.99687 * 180.02562 * 5 4 3 8 8 H 1.08995 * 109.47374 * 60.00109 * 7 5 4 9 9 C 1.52998 * 109.47040 * 299.99824 * 7 5 4 10 10 N 1.46901 * 109.46850 * 180.02562 * 7 5 4 11 11 C 1.47954 * 111.00245 * 82.17624 * 10 7 5 12 12 C 1.53937 * 86.17958 * 137.58182 * 11 10 7 13 13 C 1.47962 * 111.00120 * 181.54081 * 10 7 5 14 14 H 1.09007 * 113.85593 * 336.74808 * 13 10 7 15 15 C 1.52993 * 113.76178 * 108.09584 * 13 10 7 16 16 N 1.46501 * 109.47388 * 301.06791 * 15 13 10 17 17 C 1.34776 * 120.00243 * 180.02562 * 16 15 13 18 18 O 1.21274 * 119.99938 * 359.97438 * 17 16 15 19 19 C 1.50701 * 119.99891 * 180.02562 * 17 16 15 20 20 S 1.81001 * 109.46805 * 180.02562 * 19 17 16 21 21 C 1.76200 * 99.99799 * 179.97438 * 20 19 17 22 22 H 1.08000 * 120.00354 * 359.97438 * 21 20 19 23 23 C 1.38800 * 119.99979 * 179.97438 * 21 20 19 24 24 N 1.31626 * 120.00032 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00116 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47415 * 59.99942 * 25 23 21 27 27 H 1.48494 * 109.47391 * 180.02562 * 25 23 21 28 28 H 1.48506 * 109.47169 * 300.00012 * 25 23 21 29 29 H 1.07999 * 119.99949 * 180.02562 * 1 2 3 30 30 H 1.07998 * 120.00108 * 0.02562 * 1 2 3 31 31 H 1.07998 * 120.00108 * 179.97438 * 2 1 3 32 32 H 1.08995 * 109.46976 * 4.99942 * 3 2 1 33 33 H 1.09000 * 109.46951 * 245.00002 * 3 2 1 34 34 H 0.97000 * 119.99918 * 0.02562 * 4 3 2 35 35 H 1.08997 * 109.47041 * 310.00353 * 9 7 5 36 36 H 1.09002 * 109.47049 * 70.00060 * 9 7 5 37 37 H 1.08997 * 109.47206 * 190.00307 * 9 7 5 38 38 H 1.09006 * 113.75870 * 23.26767 * 11 10 7 39 39 H 1.08992 * 113.86418 * 251.91284 * 11 10 7 40 40 H 1.09007 * 113.73312 * 221.92405 * 12 11 10 41 41 H 1.08995 * 113.83079 * 90.65724 * 12 11 10 42 42 H 1.08998 * 109.47405 * 181.06697 * 15 13 10 43 43 H 1.08997 * 109.47029 * 61.06809 * 15 13 10 44 44 H 0.97004 * 119.99598 * 359.97438 * 16 15 13 45 45 H 1.08997 * 109.47192 * 299.99857 * 19 17 16 46 46 H 1.09000 * 109.47362 * 60.00422 * 19 17 16 47 47 H 0.97001 * 120.00345 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3320 1.1314 5 6 3.7789 2.4087 1.3328 6 8 3.7151 3.3556 0.5777 7 6 4.7363 2.4361 2.4964 8 1 5.4409 1.6094 2.4067 9 6 3.9537 2.2995 3.8040 10 7 5.4707 3.7083 2.4964 11 6 4.6718 4.7817 3.1278 12 6 5.9795 5.2066 3.8198 13 6 6.4484 3.7562 3.6059 14 1 6.2078 3.0901 4.4346 15 6 7.9042 3.6398 3.1501 16 7 8.0916 2.3767 2.4319 17 6 9.3031 2.0571 1.9354 18 8 10.2381 2.8153 2.0828 19 6 9.4957 0.7580 1.1962 20 16 11.2184 0.6196 0.6583 21 6 11.1611 -0.9437 -0.1525 22 1 10.2343 -1.4967 -0.1943 23 6 12.3070 -1.4645 -0.7375 24 7 13.4364 -0.7903 -0.6869 25 14 12.2461 -3.1215 -1.5977 26 1 11.2680 -3.0644 -2.7135 27 1 13.5911 -3.4505 -2.1342 28 1 11.8309 -4.1674 -0.6286 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3586 2.1316 0.0896 33 1 2.6213 1.4026 -0.9314 34 1 3.0450 0.5745 1.7352 35 1 3.1328 3.0165 3.8127 36 1 3.5539 1.2886 3.8843 37 1 4.6167 2.4960 4.6465 38 1 3.9099 4.4153 3.8159 39 1 4.2885 5.5190 2.4226 40 1 5.8534 5.4769 4.8683 41 1 6.5563 5.9415 3.2582 42 1 8.5604 3.6638 4.0201 43 1 8.1458 4.4725 2.4897 44 1 7.3438 1.7701 2.3143 45 1 9.2534 -0.0749 1.8561 46 1 8.8400 0.7347 0.3257 47 1 14.2373 -1.1544 -1.0954 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733202731.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:50 Heat of formation + Delta-G solvation = -35.851013 kcal Electronic energy + Delta-G solvation = -27173.745031 eV Core-core repulsion = 23290.722021 eV Total energy + Delta-G solvation = -3883.023010 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.04515 -40.55188 -39.94144 -36.75944 -35.66741 -34.58392 -34.37065 -33.14019 -31.46855 -28.82227 -28.40338 -27.62599 -27.44198 -24.45514 -24.28287 -21.84436 -21.61310 -20.79359 -20.16434 -19.67786 -18.26229 -18.01298 -17.76608 -17.32337 -16.88390 -16.85716 -16.57166 -16.25725 -16.05084 -15.84137 -15.46658 -15.20723 -14.76690 -14.64461 -14.48404 -14.36799 -14.09702 -13.85870 -13.46798 -13.33533 -13.19442 -13.17221 -12.86207 -12.71830 -12.62172 -12.40844 -12.09654 -12.04714 -11.90047 -11.82770 -11.70292 -11.12821 -10.99563 -10.91568 -10.50070 -10.28457 -10.09317 -10.05111 -9.64508 -8.67005 -8.34203 -6.12720 1.14995 1.26359 1.44018 1.46510 1.56169 1.62262 1.62483 2.16033 2.27138 2.31342 2.92405 2.99642 3.32173 3.53002 3.66094 3.73355 3.84312 3.90281 3.97713 4.07115 4.09995 4.12880 4.22690 4.27619 4.35818 4.47697 4.49910 4.54419 4.65788 4.72245 4.80429 4.90593 4.90943 4.98412 5.00567 5.08708 5.29007 5.31407 5.35379 5.41241 5.49311 5.62912 5.75390 5.99982 6.19611 6.47713 6.56123 7.06529 7.23798 7.26360 8.74877 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008919 B = 0.002734 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3138.629854 B =10237.492408 C =12939.407251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.183 4.183 3 C 0.147 3.853 4 N -0.716 5.716 5 C 0.515 3.485 6 O -0.569 6.569 7 C 0.026 3.974 8 H 0.114 0.886 9 C -0.179 4.179 10 N -0.480 5.480 11 C -0.001 4.001 12 C -0.125 4.125 13 C 0.024 3.976 14 H 0.122 0.878 15 C 0.139 3.861 16 N -0.706 5.706 17 C 0.532 3.468 18 O -0.566 6.566 19 C -0.129 4.129 20 S -0.150 6.150 21 C -0.547 4.547 22 H 0.083 0.917 23 C 0.013 3.987 24 N -0.911 5.911 25 Si 0.999 3.001 26 H -0.263 1.263 27 H -0.279 1.279 28 H -0.259 1.259 29 H 0.119 0.881 30 H 0.100 0.900 31 H 0.127 0.873 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.416 0.584 35 H 0.069 0.931 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.105 0.895 39 H 0.069 0.931 40 H 0.105 0.895 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.050 0.950 44 H 0.407 0.593 45 H 0.113 0.887 46 H 0.102 0.898 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.728 2.499 12.589 33.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.201 4.201 3 C 0.023 3.977 4 N -0.370 5.370 5 C 0.302 3.698 6 O -0.447 6.447 7 C -0.086 4.086 8 H 0.132 0.868 9 C -0.237 4.237 10 N -0.203 5.203 11 C -0.129 4.129 12 C -0.164 4.164 13 C -0.085 4.085 14 H 0.139 0.861 15 C 0.015 3.985 16 N -0.359 5.359 17 C 0.317 3.683 18 O -0.445 6.445 19 C -0.280 4.280 20 S 0.077 5.923 21 C -0.695 4.695 22 H 0.101 0.899 23 C -0.192 4.192 24 N -0.548 5.548 25 Si 0.821 3.179 26 H -0.188 1.188 27 H -0.204 1.204 28 H -0.184 1.184 29 H 0.138 0.862 30 H 0.119 0.881 31 H 0.145 0.855 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.252 0.748 35 H 0.088 0.912 36 H 0.111 0.889 37 H 0.109 0.891 38 H 0.122 0.878 39 H 0.088 0.912 40 H 0.123 0.877 41 H 0.100 0.900 42 H 0.094 0.906 43 H 0.068 0.932 44 H 0.244 0.756 45 H 0.131 0.869 46 H 0.120 0.880 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -28.855 4.522 11.561 31.412 hybrid contribution -1.190 -2.274 -0.310 2.586 sum -30.045 2.248 11.252 32.161 Atomic orbital electron populations 1.24161 0.95540 1.03256 0.96621 1.22939 0.96442 0.97327 1.03387 1.20352 0.91510 0.96581 0.89215 1.45912 1.40341 1.19904 1.30863 1.20878 0.80737 0.82077 0.86137 1.90708 1.68565 1.37217 1.48176 1.22248 0.96040 0.96356 0.93977 0.86830 1.22476 1.01204 1.04663 0.95398 1.68638 1.09896 1.03400 1.38340 1.24082 0.96728 0.94487 0.97621 1.23288 0.95742 0.94627 1.02702 1.23914 0.90905 0.99854 0.93803 0.86098 1.21371 0.95900 0.85269 0.95958 1.45647 1.10193 1.22743 1.57351 1.20066 0.82965 0.86918 0.78307 1.90684 1.42207 1.52543 1.59040 1.23360 1.02825 0.98545 1.03281 1.85588 1.07005 1.27829 1.71897 1.23169 0.99530 1.05204 1.41595 0.89916 1.26150 0.93908 1.02795 0.96361 1.70180 1.00969 1.40070 1.43566 0.84993 0.77776 0.76675 0.78478 1.18814 1.20388 1.18380 0.86243 0.88137 0.85513 0.91967 0.92577 0.74750 0.91218 0.88925 0.89149 0.87780 0.91244 0.87656 0.89996 0.90626 0.93166 0.75613 0.86893 0.87997 0.91978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 14.32 67.78 0.97 -0.22 16 2 C -0.18 -1.73 9.63 25.65 0.25 -1.48 16 3 C 0.15 2.16 6.11 85.64 0.52 2.69 16 4 N -0.72 -9.65 5.45 -466.78 -2.54 -12.19 16 5 C 0.52 10.18 7.06 87.66 0.62 10.80 16 6 O -0.57 -17.22 16.16 -3.02 -0.05 -17.27 16 7 C 0.03 0.36 2.71 44.17 0.12 0.48 16 8 H 0.11 1.34 6.40 -2.39 -0.02 1.32 16 9 C -0.18 -1.10 7.67 71.98 0.55 -0.55 16 10 N -0.48 -8.80 5.43 -863.09 -4.69 -13.49 16 11 C 0.00 -0.02 7.26 86.41 0.63 0.61 16 12 C -0.13 -1.60 7.84 31.24 0.25 -1.35 16 13 C 0.02 0.35 3.18 45.01 0.14 0.50 16 14 H 0.12 1.05 5.95 -2.38 -0.01 1.04 16 15 C 0.14 3.22 5.80 86.38 0.50 3.72 16 16 N -0.71 -18.97 5.50 -463.08 -2.55 -21.52 16 17 C 0.53 20.55 7.85 87.66 0.69 21.24 16 18 O -0.57 -27.28 15.86 -3.01 -0.05 -27.33 16 19 C -0.13 -5.28 6.16 71.24 0.44 -4.85 16 20 S -0.15 -8.54 20.57 -56.49 -1.16 -9.70 16 21 C -0.55 -31.65 9.50 67.95 0.65 -31.01 16 22 H 0.08 4.42 7.80 -2.91 -0.02 4.39 16 23 C 0.01 0.72 5.49 84.86 0.47 1.19 16 24 N -0.91 -56.68 13.22 21.65 0.29 -56.39 16 25 Si 1.00 43.85 29.55 68.60 2.03 45.88 16 26 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 27 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 28 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 29 H 0.12 0.55 8.06 -2.91 -0.02 0.53 16 30 H 0.10 0.74 7.84 -2.91 -0.02 0.72 16 31 H 0.13 0.95 8.06 -2.91 -0.02 0.93 16 32 H 0.06 1.01 7.79 -2.39 -0.02 0.99 16 33 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.42 2.89 8.10 -92.71 -0.75 2.14 16 35 H 0.07 0.49 6.36 -2.39 -0.02 0.48 16 36 H 0.09 0.20 7.86 -2.39 -0.02 0.19 16 37 H 0.09 0.34 5.91 -2.39 -0.01 0.33 16 38 H 0.10 1.02 5.00 -2.38 -0.01 1.01 16 39 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.11 0.77 8.14 -2.38 -0.02 0.75 16 41 H 0.08 1.31 7.94 -2.39 -0.02 1.29 16 42 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.05 1.42 7.91 -2.39 -0.02 1.40 16 44 H 0.41 8.48 6.51 -92.71 -0.60 7.88 16 45 H 0.11 4.04 8.14 -2.40 -0.02 4.02 16 46 H 0.10 3.90 8.14 -2.39 -0.02 3.88 16 47 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -87.16 398.31 -2.30 -89.45 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: -0.36 Total: 20.79 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: 6.79 Total: 1.76 kcal Atomic # 7 Polarization: -94.09 SS G_CDS: -9.49 Total: -103.58 kcal Atomic # 8 Polarization: -44.50 SS G_CDS: -0.10 Total: -44.60 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 16 Polarization: -8.54 SS G_CDS: -1.16 Total: -9.70 kcal Total: -87.16 -2.30 -89.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733202731.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.600 kcal (2) G-P(sol) polarization free energy of solvation -87.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds