Wall clock time and date at job start Wed Apr 1 2020 00:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50706 * 119.99602 * 2 1 4 4 N 1.46503 * 109.47053 * 125.00190 * 3 2 1 5 5 C 1.34770 * 120.00045 * 179.97438 * 4 3 2 6 6 O 1.21283 * 120.00050 * 359.97438 * 5 4 3 7 7 C 1.50695 * 120.00044 * 179.97438 * 5 4 3 8 8 H 1.09000 * 109.47474 * 60.00321 * 7 5 4 9 9 C 1.52997 * 109.47269 * 300.00200 * 7 5 4 10 10 N 1.46904 * 109.47469 * 180.02562 * 7 5 4 11 11 C 1.47959 * 110.99817 * 284.64091 * 10 7 5 12 12 C 1.53936 * 86.17798 * 222.41336 * 11 10 7 13 13 C 1.47955 * 111.00440 * 185.27791 * 10 7 5 14 14 H 1.09008 * 113.85709 * 23.25267 * 13 10 7 15 15 C 1.53004 * 113.75874 * 251.90365 * 13 10 7 16 16 N 1.46497 * 109.47077 * 198.01059 * 15 13 10 17 17 C 1.34770 * 120.00337 * 174.96258 * 16 15 13 18 18 O 1.21290 * 120.00052 * 359.97438 * 17 16 15 19 19 C 1.50697 * 120.00558 * 179.97438 * 17 16 15 20 20 S 1.81002 * 109.47340 * 180.02562 * 19 17 16 21 21 C 1.76202 * 99.99844 * 180.02562 * 20 19 17 22 22 H 1.08000 * 120.00484 * 359.97438 * 21 20 19 23 23 C 1.38797 * 119.99965 * 179.97438 * 21 20 19 24 24 N 1.31627 * 120.00083 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00047 * 179.97438 * 23 21 20 26 26 H 1.48494 * 109.47317 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.47193 * 120.00259 * 25 23 21 28 28 H 1.48504 * 109.47102 * 239.99817 * 25 23 21 29 29 H 1.07993 * 120.00471 * 359.97438 * 1 2 3 30 30 H 1.08004 * 119.99364 * 179.97438 * 1 2 3 31 31 H 1.07993 * 120.00471 * 180.02562 * 2 1 3 32 32 H 1.08998 * 109.47284 * 5.00278 * 3 2 1 33 33 H 1.09000 * 109.46808 * 245.00258 * 3 2 1 34 34 H 0.97003 * 119.99537 * 0.02562 * 4 3 2 35 35 H 1.08999 * 109.47275 * 54.37136 * 9 7 5 36 36 H 1.09001 * 109.47448 * 174.37167 * 9 7 5 37 37 H 1.09005 * 109.47075 * 294.37013 * 9 7 5 38 38 H 1.09002 * 113.75985 * 108.09948 * 11 10 7 39 39 H 1.08997 * 113.76222 * 336.72618 * 11 10 7 40 40 H 1.09000 * 113.73426 * 269.36189 * 12 11 10 41 41 H 1.09000 * 113.83002 * 138.09262 * 12 11 10 42 42 H 1.09001 * 109.47034 * 78.00957 * 15 13 10 43 43 H 1.08996 * 109.46942 * 318.00612 * 15 13 10 44 44 H 0.97006 * 120.00078 * 354.95905 * 16 15 13 45 45 H 1.08997 * 109.47382 * 300.00309 * 19 17 16 46 46 H 1.09002 * 109.46999 * 59.99767 * 19 17 16 47 47 H 0.97001 * 120.00842 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3320 1.1314 5 6 3.7789 2.4087 1.3329 6 8 3.7156 3.3553 0.5772 7 6 4.7354 2.4365 2.4970 8 1 5.4401 1.6098 2.4081 9 6 3.9520 2.3006 3.8042 10 7 5.4700 3.7087 2.4970 11 6 6.5101 3.7204 1.4448 12 6 7.4227 4.3735 2.4985 13 6 6.5081 3.7217 3.5512 14 1 6.8337 2.7288 3.8615 15 6 6.1766 4.6371 4.7315 16 7 7.3988 4.9205 5.4879 17 6 7.3684 5.7912 6.5161 18 8 6.3292 6.3406 6.8150 19 6 8.6254 6.0823 7.2946 20 16 8.2621 7.2810 8.6012 21 6 9.8593 7.4334 9.3294 22 1 10.6889 6.8650 8.9355 23 6 10.0514 8.2838 10.4093 24 7 9.0402 8.9762 10.8898 25 14 11.7445 8.4448 11.1819 26 1 12.7023 7.5671 10.4626 27 1 12.1996 9.8552 11.0876 28 1 11.6778 8.0407 12.6093 29 1 -0.5400 0.9352 0.0004 30 1 -0.5399 -0.9354 -0.0004 31 1 1.8500 -0.9352 -0.0004 32 1 1.3585 2.1317 0.0896 33 1 2.6212 1.4027 -0.9314 34 1 3.0451 0.5745 1.7351 35 1 3.3293 1.4069 3.7633 36 1 4.6486 2.2202 4.6386 37 1 3.3199 3.1779 3.9418 38 1 6.2757 4.3716 0.6027 39 1 6.8353 2.7264 1.1377 40 1 7.3840 5.4628 2.4978 41 1 8.4410 3.9846 2.5010 42 1 5.4531 4.1446 5.3812 43 1 5.7547 5.5708 4.3598 44 1 8.2301 4.4813 5.2487 45 1 8.9979 5.1604 7.7412 46 1 9.3810 6.4924 6.6245 47 1 9.1743 9.5703 11.6448 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733202732.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:53 Heat of formation + Delta-G solvation = -45.610455 kcal Electronic energy + Delta-G solvation = -26382.844797 eV Core-core repulsion = 22499.398586 eV Total energy + Delta-G solvation = -3883.446211 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.81593 -40.58832 -39.88993 -36.77170 -35.72711 -34.56600 -34.45699 -33.14256 -31.57886 -29.02744 -28.06894 -27.63299 -27.27428 -24.46930 -24.02276 -21.80850 -21.54546 -20.74812 -20.60801 -19.80517 -18.32323 -17.92565 -17.55934 -17.34158 -16.87806 -16.86310 -16.54934 -16.19250 -15.97089 -15.84733 -15.37447 -15.13240 -14.80157 -14.62309 -14.46377 -14.38540 -14.11313 -13.56388 -13.47987 -13.37875 -13.15117 -13.13739 -12.99806 -12.89945 -12.78958 -12.56448 -12.11935 -12.07666 -11.89589 -11.68767 -11.59288 -11.14139 -11.04516 -10.92318 -10.49217 -10.23908 -10.10287 -10.07325 -9.76102 -8.64534 -8.32798 -6.10742 1.14264 1.28571 1.42983 1.48549 1.59309 1.59775 1.64891 2.06100 2.28958 2.36617 2.98825 3.01611 3.35798 3.49386 3.59515 3.77222 3.85031 3.94207 4.01443 4.04920 4.11169 4.14257 4.22537 4.31334 4.35025 4.53291 4.54711 4.64273 4.69034 4.73456 4.74168 4.84494 4.85735 4.97694 4.98327 5.17387 5.23593 5.31922 5.34380 5.44233 5.46928 5.62376 5.75973 5.99406 6.22098 6.54070 6.54627 7.08708 7.23787 7.28806 8.76721 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.033125 B = 0.001607 C = 0.001569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.076019 B =17415.485784 C =17845.775189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.179 4.179 3 C 0.147 3.853 4 N -0.716 5.716 5 C 0.515 3.485 6 O -0.569 6.569 7 C 0.033 3.967 8 H 0.105 0.895 9 C -0.143 4.143 10 N -0.478 5.478 11 C 0.015 3.985 12 C -0.136 4.136 13 C 0.035 3.965 14 H 0.119 0.881 15 C 0.143 3.857 16 N -0.705 5.705 17 C 0.534 3.466 18 O -0.569 6.569 19 C -0.127 4.127 20 S -0.156 6.156 21 C -0.544 4.544 22 H 0.085 0.915 23 C 0.013 3.987 24 N -0.912 5.912 25 Si 0.999 3.001 26 H -0.255 1.255 27 H -0.275 1.275 28 H -0.274 1.274 29 H 0.095 0.905 30 H 0.120 0.880 31 H 0.134 0.866 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.416 0.584 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.047 0.953 38 H 0.072 0.928 39 H 0.089 0.911 40 H 0.076 0.924 41 H 0.104 0.896 42 H 0.060 0.940 43 H 0.048 0.952 44 H 0.418 0.582 45 H 0.113 0.887 46 H 0.111 0.889 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.772 -25.931 -23.335 35.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.197 4.197 3 C 0.023 3.977 4 N -0.370 5.370 5 C 0.302 3.698 6 O -0.447 6.447 7 C -0.079 4.079 8 H 0.123 0.877 9 C -0.201 4.201 10 N -0.203 5.203 11 C -0.114 4.114 12 C -0.174 4.174 13 C -0.075 4.075 14 H 0.136 0.864 15 C 0.019 3.981 16 N -0.360 5.360 17 C 0.320 3.680 18 O -0.447 6.447 19 C -0.278 4.278 20 S 0.071 5.929 21 C -0.692 4.692 22 H 0.103 0.897 23 C -0.192 4.192 24 N -0.549 5.549 25 Si 0.821 3.179 26 H -0.179 1.179 27 H -0.201 1.201 28 H -0.200 1.200 29 H 0.113 0.887 30 H 0.138 0.862 31 H 0.151 0.849 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.253 0.747 35 H 0.108 0.892 36 H 0.096 0.904 37 H 0.066 0.934 38 H 0.091 0.909 39 H 0.107 0.893 40 H 0.095 0.905 41 H 0.123 0.877 42 H 0.078 0.922 43 H 0.067 0.933 44 H 0.255 0.745 45 H 0.132 0.868 46 H 0.129 0.871 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.164 -23.772 -23.310 34.810 hybrid contribution 2.338 -1.059 0.306 2.585 sum -7.827 -24.831 -23.004 34.743 Atomic orbital electron populations 1.24177 0.95851 1.03132 0.96887 1.22947 0.96246 0.97403 1.03117 1.20373 0.91524 0.96460 0.89317 1.45898 1.40269 1.19810 1.30977 1.20843 0.81227 0.81917 0.85830 1.90709 1.68962 1.36652 1.48361 1.22295 0.96730 0.94417 0.94482 0.87731 1.21848 1.00660 1.02960 0.94587 1.68382 1.17079 1.30923 1.03890 1.23781 0.90642 1.01337 0.95601 1.23372 0.99234 1.01117 0.93658 1.23634 0.92200 0.99901 0.91735 0.86390 1.21001 0.86400 0.98803 0.91926 1.45488 1.13576 1.44955 1.31941 1.20080 0.89235 0.78444 0.80290 1.90708 1.34057 1.51589 1.68355 1.23354 0.98979 1.04484 1.01014 1.85647 1.17040 1.54437 1.35776 1.23249 0.95340 1.31054 1.19569 0.89739 1.26129 1.02566 0.94067 0.96409 1.70194 1.33241 1.26578 1.24895 0.84900 0.76745 0.78375 0.77885 1.17856 1.20099 1.19973 0.88654 0.86157 0.84868 0.92750 0.91627 0.74698 0.89168 0.90350 0.93422 0.90896 0.89310 0.90517 0.87738 0.92162 0.93305 0.74481 0.86838 0.87086 0.92051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.00 14.32 67.78 0.97 -0.03 16 2 C -0.18 -1.18 9.63 25.65 0.25 -0.93 16 3 C 0.15 1.76 6.11 85.63 0.52 2.28 16 4 N -0.72 -8.05 5.40 -466.79 -2.52 -10.58 16 5 C 0.52 9.33 7.01 87.66 0.61 9.94 16 6 O -0.57 -16.01 15.84 -3.04 -0.05 -16.06 16 7 C 0.03 0.44 2.08 44.17 0.09 0.53 16 8 H 0.11 0.76 7.69 -2.39 -0.02 0.74 16 9 C -0.14 -1.72 8.86 71.98 0.64 -1.08 16 10 N -0.48 -8.83 5.41 -863.08 -4.67 -13.50 16 11 C 0.01 0.23 7.07 86.41 0.61 0.84 16 12 C -0.14 -1.91 7.69 31.24 0.24 -1.67 16 13 C 0.03 0.51 2.39 45.02 0.11 0.62 16 14 H 0.12 1.02 7.86 -2.38 -0.02 1.01 16 15 C 0.14 3.30 5.64 86.38 0.49 3.79 16 16 N -0.71 -16.96 5.43 -463.07 -2.52 -19.48 16 17 C 0.53 19.55 7.85 87.66 0.69 20.24 16 18 O -0.57 -26.95 15.86 -3.06 -0.05 -27.00 16 19 C -0.13 -4.93 6.16 71.23 0.44 -4.49 16 20 S -0.16 -8.69 20.57 -56.49 -1.16 -9.85 16 21 C -0.54 -30.95 9.50 67.95 0.65 -30.30 16 22 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 23 C 0.01 0.73 5.49 84.86 0.47 1.20 16 24 N -0.91 -56.28 13.22 21.65 0.29 -55.99 16 25 Si 1.00 43.45 29.55 68.60 2.03 45.47 16 26 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 27 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 28 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 29 H 0.10 0.69 7.84 -2.91 -0.02 0.67 16 30 H 0.12 0.37 8.06 -2.91 -0.02 0.34 16 31 H 0.13 0.41 8.06 -2.91 -0.02 0.39 16 32 H 0.05 0.85 7.79 -2.39 -0.02 0.83 16 33 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.42 1.98 7.82 -92.71 -0.73 1.26 16 35 H 0.09 0.59 7.41 -2.39 -0.02 0.58 16 36 H 0.08 0.85 6.85 -2.39 -0.02 0.84 16 37 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 38 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.09 0.97 7.70 -2.39 -0.02 0.95 16 40 H 0.08 1.43 8.10 -2.39 -0.02 1.41 16 41 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.06 1.47 7.37 -2.39 -0.02 1.45 16 43 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.42 6.66 8.44 -92.70 -0.78 5.88 16 45 H 0.11 3.86 8.14 -2.40 -0.02 3.84 16 46 H 0.11 3.85 8.14 -2.39 -0.02 3.83 16 47 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -86.44 406.50 -2.42 -88.85 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: -0.53 Total: 17.19 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: 6.77 Total: 0.93 kcal Atomic # 7 Polarization: -90.12 SS G_CDS: -9.42 Total: -99.54 kcal Atomic # 8 Polarization: -42.96 SS G_CDS: -0.10 Total: -43.06 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Atomic # 16 Polarization: -8.69 SS G_CDS: -1.16 Total: -9.85 kcal Total: -86.44 -2.42 -88.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733202732.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.243 kcal (2) G-P(sol) polarization free energy of solvation -86.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds