Wall clock time and date at job start Wed Apr 1 2020 00:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50693 * 120.00125 * 2 1 4 4 N 1.46503 * 109.47057 * 125.00138 * 3 2 1 5 5 C 1.34775 * 120.00225 * 179.97438 * 4 3 2 6 6 O 1.21279 * 119.99812 * 0.02562 * 5 4 3 7 7 C 1.50699 * 120.00054 * 179.72714 * 5 4 3 8 8 H 1.09006 * 109.46921 * 300.27626 * 7 5 4 9 9 C 1.52997 * 109.47207 * 60.27866 * 7 5 4 10 10 N 1.46900 * 109.47359 * 180.28065 * 7 5 4 11 11 C 1.47474 * 111.00304 * 77.16572 * 10 7 5 12 12 C 1.53505 * 87.93437 * 138.70650 * 11 10 7 13 13 C 1.47473 * 111.00473 * 173.14276 * 10 7 5 14 14 H 1.09002 * 113.47394 * 336.05675 * 13 10 7 15 15 C 1.52996 * 113.47978 * 106.52415 * 13 10 7 16 16 N 1.46501 * 109.47274 * 184.37875 * 15 13 10 17 17 C 1.34775 * 120.00167 * 175.07719 * 16 15 13 18 18 O 1.21279 * 119.99984 * 0.02562 * 17 16 15 19 19 C 1.50702 * 119.99837 * 179.97438 * 17 16 15 20 20 S 1.81009 * 109.46908 * 180.02562 * 19 17 16 21 21 C 1.76197 * 99.99886 * 180.02562 * 20 19 17 22 22 H 1.08004 * 119.99972 * 359.97438 * 21 20 19 23 23 C 1.38799 * 119.99804 * 179.97438 * 21 20 19 24 24 N 1.31626 * 119.99729 * 179.97438 * 23 21 20 25 25 Si 1.86795 * 119.99920 * 0.02562 * 23 21 20 26 26 H 1.48494 * 109.47427 * 89.99772 * 25 23 21 27 27 H 1.48513 * 109.46804 * 209.99544 * 25 23 21 28 28 H 1.48500 * 109.47207 * 329.99230 * 25 23 21 29 29 H 1.07999 * 119.99830 * 359.97438 * 1 2 3 30 30 H 1.07997 * 120.00196 * 179.97438 * 1 2 3 31 31 H 1.07999 * 119.99830 * 180.02562 * 2 1 3 32 32 H 1.09010 * 109.47482 * 5.00913 * 3 2 1 33 33 H 1.08994 * 109.47782 * 245.00252 * 3 2 1 34 34 H 0.97002 * 119.99591 * 0.02562 * 4 3 2 35 35 H 1.09001 * 109.46692 * 305.36292 * 9 7 5 36 36 H 1.08998 * 109.46970 * 65.35793 * 9 7 5 37 37 H 1.09001 * 109.47214 * 185.36701 * 9 7 5 38 38 H 1.09000 * 113.48190 * 253.47804 * 11 10 7 39 39 H 1.09004 * 113.47762 * 23.93679 * 11 10 7 40 40 H 1.09005 * 114.17570 * 220.32996 * 12 11 10 41 41 H 1.09001 * 114.34659 * 87.63798 * 12 11 10 42 42 H 1.08995 * 109.47405 * 304.37580 * 15 13 10 43 43 H 1.08999 * 109.47192 * 64.37918 * 15 13 10 44 44 H 0.97001 * 119.99677 * 355.07870 * 16 15 13 45 45 H 1.09001 * 109.47405 * 300.00079 * 19 17 16 46 46 H 1.08995 * 109.47294 * 60.00658 * 19 17 16 47 47 H 0.97005 * 120.00290 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3318 1.1314 5 6 3.7791 2.4084 1.3329 6 8 3.7153 3.3553 0.5778 7 6 4.7316 2.4384 2.5003 8 1 4.1706 2.3394 3.4297 9 6 5.7246 1.2809 2.3782 10 7 5.4627 3.7126 2.5032 11 6 4.6180 4.8055 3.0196 12 6 5.8454 5.3172 3.7865 13 6 6.2845 3.8477 3.7203 14 1 5.9238 3.2487 4.5565 15 6 7.7829 3.6701 3.4669 16 7 8.5027 3.7169 4.7420 17 6 9.8295 3.4829 4.7759 18 8 10.4277 3.2339 3.7507 19 6 10.5700 3.5316 6.0875 20 16 12.3225 3.1778 5.8045 21 6 12.9290 3.2967 7.4545 22 1 12.2522 3.5304 8.2631 23 6 14.2765 3.0901 7.7151 24 7 14.7297 3.1795 8.9477 25 14 15.4472 2.6868 6.3164 26 1 16.0031 3.9453 5.7576 27 1 16.5552 1.8400 6.8270 28 1 14.7140 1.9542 5.2529 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3586 2.1317 0.0897 33 1 2.6213 1.4026 -0.9313 34 1 3.0451 0.5742 1.7351 35 1 5.1786 0.3426 2.2803 36 1 6.3506 1.4305 1.4985 37 1 6.3520 1.2449 3.2689 38 1 4.2730 5.4908 2.2453 39 1 3.8125 4.4622 3.6688 40 1 5.6264 5.6727 4.7934 41 1 6.4787 5.9983 3.2179 42 1 7.9585 2.7079 2.9858 43 1 8.1393 4.4708 2.8189 44 1 8.0243 3.9163 5.5620 45 1 10.4664 4.5239 6.5267 46 1 10.1542 2.7881 6.7674 47 1 15.6715 3.0355 9.1298 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733202733.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:56 Heat of formation + Delta-G solvation = -12.889941 kcal Electronic energy + Delta-G solvation = -26474.362348 eV Core-core repulsion = 22592.335005 eV Total energy + Delta-G solvation = -3882.027343 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.27807 -39.63352 -38.93810 -36.23708 -34.57542 -33.88815 -32.69961 -32.43550 -30.30169 -28.02235 -27.49467 -26.74322 -25.60358 -23.78149 -23.19372 -21.07391 -20.65219 -20.26784 -19.94795 -17.96841 -17.66953 -17.08463 -16.39880 -16.28985 -16.13150 -15.97965 -15.25522 -15.01424 -14.91285 -14.80534 -14.39740 -14.22389 -13.74965 -13.69714 -13.64370 -13.24356 -12.99815 -12.84344 -12.78950 -12.51191 -12.44891 -12.28352 -11.82019 -11.76336 -11.52644 -11.35830 -11.25835 -11.00181 -10.80327 -10.58014 -10.45269 -9.98856 -9.84977 -9.52354 -9.49261 -9.27317 -9.00978 -8.93501 -8.49145 -6.91151 -6.28656 -4.00257 1.46446 2.26168 2.65074 2.82504 2.99916 3.23750 3.34210 3.51329 3.54623 3.83042 4.05650 4.15649 4.21783 4.33851 4.40613 4.46418 4.51996 4.56546 4.71406 4.77659 4.82363 4.88615 4.97916 5.10584 5.18559 5.19781 5.24346 5.29647 5.34311 5.41247 5.48397 5.58919 5.67035 5.78507 5.81188 5.84611 5.84698 5.91463 5.99075 6.02053 6.08820 6.46110 6.63360 7.04243 7.61728 7.83421 7.94343 8.41631 8.51159 9.17703 10.80542 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.024919 B = 0.001724 C = 0.001669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.366557 B =16233.213130 C =16768.346848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.178 4.178 3 C 0.148 3.852 4 N -0.732 5.732 5 C 0.521 3.479 6 O -0.518 6.518 7 C 0.029 3.971 8 H 0.074 0.926 9 C -0.146 4.146 10 N -0.437 5.437 11 C 0.004 3.996 12 C -0.140 4.140 13 C 0.017 3.983 14 H 0.085 0.915 15 C 0.138 3.862 16 N -0.736 5.736 17 C 0.531 3.469 18 O -0.518 6.518 19 C -0.124 4.124 20 S -0.142 6.142 21 C -0.522 4.522 22 H 0.088 0.912 23 C 0.096 3.904 24 N -0.881 5.881 25 Si 0.857 3.143 26 H -0.267 1.267 27 H -0.274 1.274 28 H -0.235 1.235 29 H 0.100 0.900 30 H 0.104 0.896 31 H 0.116 0.884 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.401 0.599 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.093 0.907 39 H 0.066 0.934 40 H 0.080 0.920 41 H 0.099 0.901 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.398 0.602 45 H 0.097 0.903 46 H 0.097 0.903 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.097 -4.097 -12.502 33.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.196 4.196 3 C 0.025 3.975 4 N -0.385 5.385 5 C 0.306 3.694 6 O -0.391 6.391 7 C -0.083 4.083 8 H 0.092 0.908 9 C -0.204 4.204 10 N -0.160 5.160 11 C -0.124 4.124 12 C -0.178 4.178 13 C -0.092 4.092 14 H 0.103 0.897 15 C 0.014 3.986 16 N -0.391 5.391 17 C 0.316 3.684 18 O -0.392 6.392 19 C -0.274 4.274 20 S 0.085 5.915 21 C -0.669 4.669 22 H 0.106 0.894 23 C -0.113 4.113 24 N -0.517 5.517 25 Si 0.681 3.319 26 H -0.192 1.192 27 H -0.200 1.200 28 H -0.159 1.159 29 H 0.118 0.882 30 H 0.122 0.878 31 H 0.134 0.866 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.235 0.765 35 H 0.084 0.916 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.112 0.888 39 H 0.084 0.916 40 H 0.099 0.901 41 H 0.118 0.882 42 H 0.090 0.910 43 H 0.092 0.908 44 H 0.232 0.768 45 H 0.115 0.885 46 H 0.115 0.885 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -29.703 -3.811 -15.363 33.657 hybrid contribution -0.792 -0.476 2.304 2.483 sum -30.495 -4.287 -13.059 33.449 Atomic orbital electron populations 1.24001 0.95779 1.02505 0.97988 1.23013 0.96258 0.98122 1.02210 1.20393 0.91728 0.95526 0.89902 1.45993 1.41249 1.20221 1.31079 1.20403 0.80339 0.82291 0.86384 1.90724 1.66896 1.35108 1.46415 1.22260 0.95328 0.94325 0.96417 0.90811 1.21853 0.98933 0.95236 1.04374 1.68875 1.12830 1.01553 1.32780 1.23705 0.95467 0.94862 0.98391 1.23291 0.97527 0.95681 1.01303 1.23669 0.94990 0.97596 0.92978 0.89699 1.21115 0.88344 1.03160 0.86017 1.45876 1.08628 1.74436 1.10154 1.20253 0.81366 0.75772 0.90960 1.90711 1.66974 1.46404 1.35128 1.23276 1.01250 1.05755 0.97152 1.84814 0.99107 1.92752 1.14871 1.22323 0.97607 1.55735 0.91269 0.89404 1.24706 0.97337 0.93466 0.95756 1.69939 1.15512 1.47471 1.18803 0.86737 0.81678 0.80123 0.83326 1.19193 1.19958 1.15919 0.88159 0.87779 0.86585 0.91120 0.90549 0.76499 0.91612 0.90628 0.90910 0.88835 0.91595 0.90116 0.88201 0.91002 0.90817 0.76833 0.88483 0.88522 0.91956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.58 14.32 29.01 0.42 -0.17 16 2 C -0.18 -0.72 9.63 -36.03 -0.35 -1.07 16 3 C 0.15 0.90 6.11 -5.20 -0.03 0.86 16 4 N -0.73 -4.55 5.41 -61.47 -0.33 -4.88 16 5 C 0.52 4.81 7.02 -10.99 -0.08 4.73 16 6 O -0.52 -6.91 15.93 5.56 0.09 -6.83 16 7 C 0.03 0.22 2.08 -68.87 -0.14 0.08 16 8 H 0.07 0.42 7.56 -51.93 -0.39 0.03 16 9 C -0.15 -1.03 8.50 37.16 0.32 -0.71 16 10 N -0.44 -4.10 5.53 -229.94 -1.27 -5.38 16 11 C 0.00 0.04 6.92 -7.56 -0.05 -0.02 16 12 C -0.14 -1.04 8.00 -26.20 -0.21 -1.25 16 13 C 0.02 0.14 2.22 -71.45 -0.16 -0.02 16 14 H 0.09 0.56 7.82 -51.93 -0.41 0.15 16 15 C 0.14 1.56 5.65 -4.04 -0.02 1.54 16 16 N -0.74 -8.91 5.55 -60.30 -0.33 -9.24 16 17 C 0.53 9.25 7.85 -10.99 -0.09 9.17 16 18 O -0.52 -11.21 15.86 5.56 0.09 -11.12 16 19 C -0.12 -2.34 6.16 36.01 0.22 -2.12 16 20 S -0.14 -3.58 18.55 -107.50 -1.99 -5.58 16 21 C -0.52 -14.97 10.04 30.94 0.31 -14.66 16 22 H 0.09 2.62 8.03 -52.48 -0.42 2.20 16 23 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 24 N -0.88 -26.49 13.97 55.49 0.78 -25.72 16 25 Si 0.86 21.79 27.74 -169.99 -4.71 17.07 16 26 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 27 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 28 H -0.24 -5.98 6.74 56.52 0.38 -5.60 16 29 H 0.10 0.33 7.84 -52.49 -0.41 -0.08 16 30 H 0.10 0.25 8.06 -52.49 -0.42 -0.17 16 31 H 0.12 0.37 8.06 -52.49 -0.42 -0.06 16 32 H 0.07 0.48 7.79 -51.92 -0.40 0.07 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.40 1.48 7.83 -40.82 -0.32 1.16 16 35 H 0.06 0.31 7.43 -51.93 -0.39 -0.07 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.53 6.93 -51.93 -0.36 0.17 16 38 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.07 0.44 7.65 -51.93 -0.40 0.04 16 40 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.10 0.84 7.94 -51.93 -0.41 0.43 16 42 H 0.07 0.91 6.98 -51.93 -0.36 0.54 16 43 H 0.07 0.95 7.89 -51.93 -0.41 0.54 16 44 H 0.40 3.57 8.48 -40.82 -0.35 3.22 16 45 H 0.10 1.71 8.14 -51.91 -0.42 1.28 16 46 H 0.10 1.68 8.14 -51.92 -0.42 1.26 16 47 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 402.94 15.07 6.07 6.07 Total: -1.00 -36.76 402.94 -9.15 -45.91 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -7.57 Total: 0.61 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: 0.04 Total: -0.93 kcal Atomic # 7 Polarization: -44.05 SS G_CDS: -1.16 Total: -45.21 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: 0.18 Total: -17.95 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.71 Total: 17.07 kcal Atomic # 16 Polarization: -3.58 SS G_CDS: -1.99 Total: -5.58 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -36.76 -9.15 -45.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733202733.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.025 kcal (2) G-P(sol) polarization free energy of solvation -36.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds