Wall clock time and date at job start Wed Apr 1 2020 00:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46918 * 2 1 4 4 N 1.46498 * 109.47060 * 120.00521 * 2 1 3 5 5 C 1.34771 * 119.99818 * 274.99763 * 4 2 1 6 6 O 1.21282 * 120.00430 * 359.97438 * 5 4 2 7 7 C 1.50707 * 119.99835 * 180.02562 * 5 4 2 8 8 S 1.81005 * 109.46910 * 180.02562 * 7 5 4 9 9 C 1.76197 * 99.99824 * 180.02562 * 8 7 5 10 10 H 1.08010 * 120.00226 * 359.97438 * 9 8 7 11 11 C 1.38795 * 120.00271 * 179.97438 * 9 8 7 12 12 N 1.31628 * 119.99875 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00387 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.46776 * 60.00302 * 13 11 9 15 15 H 1.48498 * 109.47208 * 179.97438 * 13 11 9 16 16 H 1.48492 * 109.47281 * 300.00470 * 13 11 9 17 17 C 1.53003 * 109.46884 * 240.00638 * 2 1 3 18 18 C 1.53506 * 114.17233 * 60.00139 * 17 2 1 19 19 N 1.47486 * 87.93221 * 139.67021 * 18 17 2 20 20 C 1.46893 * 110.99866 * 221.29388 * 19 18 17 21 21 C 1.50697 * 109.47311 * 170.00074 * 20 19 18 22 22 O 1.21287 * 119.99823 * 359.97438 * 21 20 19 23 23 N 1.34780 * 120.00517 * 180.02562 * 21 20 19 24 24 C 1.47060 * 136.05350 * 359.62817 * 23 21 20 25 25 C 1.53237 * 88.08335 * 207.20577 * 24 23 21 26 26 C 1.47066 * 136.06089 * 179.97438 * 23 21 20 27 27 C 1.47474 * 87.83372 * 332.98688 * 19 18 17 28 28 H 1.09001 * 109.46829 * 299.99778 * 1 2 3 29 29 H 1.09007 * 109.46543 * 59.99392 * 1 2 3 30 30 H 1.08996 * 109.47125 * 179.97438 * 1 2 3 31 31 H 0.96995 * 119.99882 * 95.00289 * 4 2 1 32 32 H 1.08996 * 109.46949 * 299.99821 * 7 5 4 33 33 H 1.08992 * 109.47138 * 60.00371 * 7 5 4 34 34 H 0.97001 * 120.00294 * 179.97438 * 12 11 9 35 35 H 1.09003 * 113.37928 * 286.91677 * 17 2 1 36 36 H 1.09000 * 113.48168 * 24.90555 * 18 17 2 37 37 H 1.08999 * 113.47579 * 254.43659 * 18 17 2 38 38 H 1.09003 * 109.47687 * 290.00009 * 20 19 18 39 39 H 1.09004 * 109.47553 * 50.00122 * 20 19 18 40 40 H 1.08996 * 113.47019 * 321.93575 * 24 23 21 41 41 H 1.08997 * 113.47275 * 92.37567 * 24 23 21 42 42 H 1.09002 * 114.32694 * 220.47562 * 25 24 23 43 43 H 1.08998 * 114.20021 * 87.72229 * 25 24 23 44 44 H 1.08999 * 113.46730 * 267.62390 * 26 23 21 45 45 H 1.09002 * 113.46458 * 38.06275 * 26 23 21 46 46 H 1.09008 * 113.47506 * 141.77500 * 27 19 18 47 47 H 1.09002 * 113.47878 * 272.17950 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0184 2.3570 6 8 1.8591 1.1584 2.4115 7 6 2.6500 -0.7289 3.5874 8 16 2.7100 0.4339 4.9732 9 6 3.3147 -0.6310 6.2401 10 1 3.5247 -1.6673 6.0198 11 6 3.5212 -0.1382 7.5211 12 7 3.2648 1.1246 7.7896 13 14 4.1615 -1.2673 8.8643 14 1 5.4881 -1.8046 8.4685 15 1 4.2951 -0.5037 10.1309 16 1 3.2111 -2.3911 9.0611 17 6 2.0400 -0.7211 -1.2494 18 6 1.5893 -0.0836 -2.5711 19 7 2.9423 -0.3449 -3.0966 20 6 3.4289 0.7934 -3.8873 21 6 4.8905 0.6003 -4.1993 22 8 5.4700 -0.3882 -3.8017 23 7 5.5541 1.5265 -4.9194 24 6 5.2209 2.8069 -5.5614 25 6 6.3524 2.5416 -6.5602 26 6 6.9284 1.6984 -5.4139 27 6 3.4347 -0.2732 -1.7084 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5140 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 2.2491 -1.6318 1.1524 32 1 1.9777 -1.5511 3.8324 33 1 3.6492 -1.1206 3.3978 34 1 3.4087 1.4690 8.6850 35 1 1.9097 -1.8026 -1.2081 36 1 1.3548 0.9773 -2.4838 37 1 0.8088 -0.6479 -3.0814 38 1 2.8642 0.8577 -4.8175 39 1 3.2974 1.7138 -3.3182 40 1 4.2324 2.8180 -6.0205 41 1 5.3994 3.6721 -4.9229 42 1 6.9462 3.4209 -6.8099 43 1 6.0511 1.9629 -7.4333 44 1 7.5659 2.2655 -4.7357 45 1 7.3890 0.7687 -5.7478 46 1 4.2182 -0.9982 -1.4875 47 1 3.6937 0.7370 -1.3912 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734108176.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:02:42 Heat of formation + Delta-G solvation = 9.169098 kcal Electronic energy + Delta-G solvation = -26644.102852 eV Core-core repulsion = 22763.032061 eV Total energy + Delta-G solvation = -3881.070791 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.15853 -40.32053 -39.02219 -37.87356 -35.16795 -32.41243 -32.06521 -30.94249 -29.49987 -28.44585 -26.68505 -26.20605 -25.46459 -25.27476 -22.88136 -21.78085 -20.44212 -19.78522 -19.34346 -17.83629 -17.54264 -16.88914 -16.71407 -16.44751 -16.02249 -15.73799 -15.33271 -14.89704 -14.78747 -14.56440 -14.14681 -13.97797 -13.57263 -13.26517 -13.16879 -13.13286 -13.08521 -12.87193 -12.68284 -12.60786 -12.36913 -12.05603 -11.94475 -11.77535 -11.30544 -11.18660 -11.03024 -11.02339 -10.95790 -10.76726 -10.71340 -10.05847 -9.80437 -9.39392 -9.27648 -9.15406 -9.04391 -8.82111 -8.22180 -6.47980 -6.19867 -3.90222 2.24077 2.36527 3.04162 3.12540 3.25142 3.28782 3.32417 3.59991 3.69037 3.78192 3.95657 4.22434 4.22726 4.39043 4.41356 4.60480 4.74422 4.79039 4.85487 4.87799 4.90974 4.95382 5.06992 5.10824 5.15187 5.18887 5.20272 5.26091 5.28790 5.31213 5.40717 5.56380 5.58160 5.65959 5.70978 5.79273 5.90641 5.92498 6.06767 6.17586 6.22158 6.57760 6.71028 7.28492 7.61206 7.75993 7.83878 8.36933 8.65155 9.25408 10.87503 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015239 B = 0.001918 C = 0.001797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.956592 B =14592.887539 C =15581.413700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.155 3.845 3 H 0.086 0.914 4 N -0.733 5.733 5 C 0.534 3.466 6 O -0.520 6.520 7 C -0.154 4.154 8 S -0.061 6.061 9 C -0.536 4.536 10 H 0.072 0.928 11 C 0.073 3.927 12 N -0.868 5.868 13 Si 0.919 3.081 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.274 1.274 17 C -0.121 4.121 18 C 0.009 3.991 19 N -0.453 5.453 20 C 0.007 3.993 21 C 0.543 3.457 22 O -0.517 6.517 23 N -0.656 5.656 24 C 0.098 3.902 25 C -0.156 4.156 26 C 0.104 3.896 27 C 0.011 3.989 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.398 0.602 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.269 0.731 35 H 0.109 0.891 36 H 0.074 0.926 37 H 0.092 0.908 38 H 0.105 0.895 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.094 0.906 44 H 0.085 0.915 45 H 0.078 0.922 46 H 0.093 0.907 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.097 1.486 -31.244 31.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.050 3.950 3 H 0.104 0.896 4 N -0.387 5.387 5 C 0.320 3.680 6 O -0.394 6.394 7 C -0.305 4.305 8 S 0.166 5.834 9 C -0.684 4.684 10 H 0.090 0.910 11 C -0.136 4.136 12 N -0.504 5.504 13 Si 0.745 3.255 14 H -0.199 1.199 15 H -0.208 1.208 16 H -0.199 1.199 17 C -0.141 4.141 18 C -0.120 4.120 19 N -0.176 5.176 20 C -0.125 4.125 21 C 0.332 3.668 22 O -0.391 6.391 23 N -0.394 5.394 24 C -0.025 4.025 25 C -0.194 4.194 26 C -0.019 4.019 27 C -0.118 4.118 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.232 0.768 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.078 0.922 35 H 0.127 0.873 36 H 0.092 0.908 37 H 0.110 0.890 38 H 0.123 0.877 39 H 0.090 0.910 40 H 0.097 0.903 41 H 0.105 0.895 42 H 0.110 0.890 43 H 0.113 0.887 44 H 0.103 0.897 45 H 0.096 0.904 46 H 0.111 0.889 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.047 2.314 -31.098 31.184 hybrid contribution 0.767 -1.620 1.177 2.145 sum 0.720 0.693 -29.921 29.938 Atomic orbital electron populations 1.22159 0.95115 1.02233 1.02560 1.20832 0.94153 0.96965 0.83086 0.89625 1.46051 1.69264 1.13981 1.09357 1.20296 0.76722 0.87202 0.83770 1.90688 1.48502 1.15777 1.84457 1.23540 1.03706 1.04847 0.98373 1.85357 1.86248 1.13023 0.98778 1.22836 1.50959 0.98174 0.96409 0.90976 1.24988 0.95110 0.95543 0.97943 1.70008 1.45536 1.13241 1.21569 0.86225 0.79338 0.80019 0.79934 1.19940 1.20824 1.19936 1.23030 0.96308 1.01464 0.93270 1.23872 0.93224 1.00581 0.94341 1.68917 1.04074 1.34482 1.10077 1.22536 0.93220 0.95186 1.01511 1.20074 0.88503 0.81821 0.76384 1.90743 1.69355 1.28476 1.50541 1.49730 1.13024 1.21808 1.54852 1.22968 1.00059 0.86524 0.92965 1.23343 0.97994 1.01043 0.96986 1.22932 0.85464 1.00000 0.93513 1.23881 0.97984 1.01806 0.88103 0.91594 0.91964 0.92365 0.76763 0.89230 0.89229 0.92160 0.87258 0.90767 0.88959 0.87743 0.91047 0.90337 0.89470 0.89012 0.88720 0.89706 0.90389 0.88888 0.91253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 9.29 37.16 0.35 -1.36 16 2 C 0.16 1.77 2.47 -67.93 -0.17 1.60 16 3 H 0.09 1.15 7.33 -51.93 -0.38 0.77 16 4 N -0.73 -9.79 5.08 -53.80 -0.27 -10.06 16 5 C 0.53 9.95 7.81 -10.98 -0.09 9.87 16 6 O -0.52 -11.69 15.52 5.56 0.09 -11.60 16 7 C -0.15 -3.15 6.16 36.01 0.22 -2.92 16 8 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 9 C -0.54 -15.42 9.50 30.94 0.29 -15.13 16 10 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 11 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 12 N -0.87 -26.37 13.22 55.49 0.73 -25.64 16 13 Si 0.92 21.64 29.55 -169.99 -5.02 16.61 16 14 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 15 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 16 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 17 C -0.12 -1.11 3.64 -90.09 -0.33 -1.44 16 18 C 0.01 0.07 6.36 -7.55 -0.05 0.02 16 19 N -0.45 -4.59 6.06 -246.10 -1.49 -6.08 16 20 C 0.01 0.06 5.14 -4.98 -0.03 0.03 16 21 C 0.54 6.05 7.92 -10.99 -0.09 5.96 16 22 O -0.52 -8.05 16.54 5.55 0.09 -7.95 16 23 N -0.66 -5.30 3.69 -185.45 -0.68 -5.99 16 24 C 0.10 0.39 8.40 -8.65 -0.07 0.31 16 25 C -0.16 -0.48 8.48 -26.34 -0.22 -0.70 16 26 C 0.10 0.63 8.61 -8.51 -0.07 0.56 16 27 C 0.01 0.12 6.28 -7.55 -0.05 0.07 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.06 0.52 7.48 -51.93 -0.39 0.13 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.40 4.29 8.60 -40.82 -0.35 3.94 16 32 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 33 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 34 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 35 H 0.11 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.07 0.51 7.73 -51.93 -0.40 0.11 16 37 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.52 7.56 -51.93 -0.39 0.13 16 40 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 41 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 42 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 43 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.09 1.18 8.13 -51.92 -0.42 0.76 16 47 H 0.07 0.79 7.50 -51.93 -0.39 0.40 16 LS Contribution 403.41 15.07 6.08 6.08 Total: -1.00 -38.21 403.41 -10.85 -49.06 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -7.77 Total: 0.55 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: -0.39 Total: -1.11 kcal Atomic # 7 Polarization: -46.05 SS G_CDS: -1.72 Total: -47.77 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: 0.18 Total: -19.56 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -38.21 -10.85 -49.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734108176.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.231 kcal (2) G-P(sol) polarization free energy of solvation -38.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds