Wall clock time and date at job start Wed Apr 1 2020 00:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46918 * 2 1 4 4 N 1.46498 * 109.47060 * 120.00521 * 2 1 3 5 5 C 1.34771 * 119.99818 * 274.99763 * 4 2 1 6 6 O 1.21282 * 120.00430 * 359.97438 * 5 4 2 7 7 C 1.50707 * 119.99835 * 180.02562 * 5 4 2 8 8 S 1.81005 * 109.46910 * 180.02562 * 7 5 4 9 9 C 1.76197 * 99.99824 * 180.02562 * 8 7 5 10 10 H 1.08010 * 120.00226 * 359.97438 * 9 8 7 11 11 C 1.38795 * 120.00271 * 179.97438 * 9 8 7 12 12 N 1.31628 * 119.99875 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00387 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.46776 * 60.00302 * 13 11 9 15 15 H 1.48498 * 109.47208 * 179.97438 * 13 11 9 16 16 H 1.48492 * 109.47281 * 300.00470 * 13 11 9 17 17 C 1.53003 * 109.46884 * 240.00638 * 2 1 3 18 18 C 1.53506 * 114.17233 * 60.00139 * 17 2 1 19 19 N 1.47486 * 87.93221 * 139.67021 * 18 17 2 20 20 C 1.46893 * 110.99866 * 221.29388 * 19 18 17 21 21 C 1.50697 * 109.47311 * 170.00074 * 20 19 18 22 22 O 1.21287 * 119.99823 * 359.97438 * 21 20 19 23 23 N 1.34780 * 120.00517 * 180.02562 * 21 20 19 24 24 C 1.47060 * 136.05350 * 359.62817 * 23 21 20 25 25 C 1.53237 * 88.08335 * 207.20577 * 24 23 21 26 26 C 1.47066 * 136.06089 * 179.97438 * 23 21 20 27 27 C 1.47474 * 87.83372 * 332.98688 * 19 18 17 28 28 H 1.09001 * 109.46829 * 299.99778 * 1 2 3 29 29 H 1.09007 * 109.46543 * 59.99392 * 1 2 3 30 30 H 1.08996 * 109.47125 * 179.97438 * 1 2 3 31 31 H 0.96995 * 119.99882 * 95.00289 * 4 2 1 32 32 H 1.08996 * 109.46949 * 299.99821 * 7 5 4 33 33 H 1.08992 * 109.47138 * 60.00371 * 7 5 4 34 34 H 0.97001 * 120.00294 * 179.97438 * 12 11 9 35 35 H 1.09003 * 113.37928 * 286.91677 * 17 2 1 36 36 H 1.09000 * 113.48168 * 24.90555 * 18 17 2 37 37 H 1.08999 * 113.47579 * 254.43659 * 18 17 2 38 38 H 1.09003 * 109.47687 * 290.00009 * 20 19 18 39 39 H 1.09004 * 109.47553 * 50.00122 * 20 19 18 40 40 H 1.08996 * 113.47019 * 321.93575 * 24 23 21 41 41 H 1.08997 * 113.47275 * 92.37567 * 24 23 21 42 42 H 1.09002 * 114.32694 * 220.47562 * 25 24 23 43 43 H 1.08998 * 114.20021 * 87.72229 * 25 24 23 44 44 H 1.08999 * 113.46730 * 267.62390 * 26 23 21 45 45 H 1.09002 * 113.46458 * 38.06275 * 26 23 21 46 46 H 1.09008 * 113.47506 * 141.77500 * 27 19 18 47 47 H 1.09002 * 113.47878 * 272.17950 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0184 2.3570 6 8 1.8591 1.1584 2.4115 7 6 2.6500 -0.7289 3.5874 8 16 2.7100 0.4339 4.9732 9 6 3.3147 -0.6310 6.2401 10 1 3.5247 -1.6673 6.0198 11 6 3.5212 -0.1382 7.5211 12 7 3.2648 1.1246 7.7896 13 14 4.1615 -1.2673 8.8643 14 1 5.4881 -1.8046 8.4685 15 1 4.2951 -0.5037 10.1309 16 1 3.2111 -2.3911 9.0611 17 6 2.0400 -0.7211 -1.2494 18 6 1.5893 -0.0836 -2.5711 19 7 2.9423 -0.3449 -3.0966 20 6 3.4289 0.7934 -3.8873 21 6 4.8905 0.6003 -4.1993 22 8 5.4700 -0.3882 -3.8017 23 7 5.5541 1.5265 -4.9194 24 6 5.2209 2.8069 -5.5614 25 6 6.3524 2.5416 -6.5602 26 6 6.9284 1.6984 -5.4139 27 6 3.4347 -0.2732 -1.7084 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5140 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 2.2491 -1.6318 1.1524 32 1 1.9777 -1.5511 3.8324 33 1 3.6492 -1.1206 3.3978 34 1 3.4087 1.4690 8.6850 35 1 1.9097 -1.8026 -1.2081 36 1 1.3548 0.9773 -2.4838 37 1 0.8088 -0.6479 -3.0814 38 1 2.8642 0.8577 -4.8175 39 1 3.2974 1.7138 -3.3182 40 1 4.2324 2.8180 -6.0205 41 1 5.3994 3.6721 -4.9229 42 1 6.9462 3.4209 -6.8099 43 1 6.0511 1.9629 -7.4333 44 1 7.5659 2.2655 -4.7357 45 1 7.3890 0.7687 -5.7478 46 1 4.2182 -0.9982 -1.4875 47 1 3.6937 0.7370 -1.3912 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734108176.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:02:41 Heat of formation + Delta-G solvation = -21.277950 kcal Electronic energy + Delta-G solvation = -26645.423135 eV Core-core repulsion = 22763.032061 eV Total energy + Delta-G solvation = -3882.391074 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.91559 -41.02661 -40.30270 -38.66290 -36.34451 -34.59368 -33.12855 -31.87231 -30.36100 -29.67863 -27.67661 -27.22647 -26.83863 -25.99189 -23.65095 -22.51982 -21.62116 -20.79245 -19.96448 -19.72092 -18.21372 -17.93047 -17.76153 -17.30675 -16.89666 -16.86958 -16.56561 -16.42788 -16.07174 -15.89091 -15.34959 -14.87684 -14.66846 -14.60338 -14.27331 -13.98247 -13.85658 -13.70006 -13.50557 -13.50056 -13.19863 -13.17327 -13.16002 -12.87673 -12.76958 -12.60316 -12.39835 -11.98424 -11.86783 -11.73593 -11.68939 -11.53996 -11.13872 -10.89920 -10.84081 -10.29432 -10.21451 -9.88898 -9.76527 -8.67227 -8.35390 -6.13383 1.26187 1.42956 1.45684 1.51588 1.55964 1.62616 1.75662 2.24942 2.29224 2.90797 2.98429 3.23348 3.32327 3.42481 3.53889 3.61724 3.93881 4.03815 4.12951 4.14540 4.19348 4.22465 4.26327 4.28348 4.37808 4.39822 4.46255 4.48281 4.50682 4.58899 4.63900 4.72115 4.78760 4.80818 4.84591 4.98187 4.98539 5.14974 5.17528 5.28769 5.34394 5.40667 5.56262 5.88423 6.18760 6.52442 6.67332 7.05694 7.08498 7.26300 8.73566 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015239 B = 0.001918 C = 0.001797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.956592 B =14592.887539 C =15581.413700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.156 3.844 3 H 0.065 0.935 4 N -0.709 5.709 5 C 0.536 3.464 6 O -0.564 6.564 7 C -0.132 4.132 8 S -0.149 6.149 9 C -0.549 4.549 10 H 0.081 0.919 11 C 0.013 3.987 12 N -0.910 5.910 13 Si 0.998 3.002 14 H -0.263 1.263 15 H -0.278 1.278 16 H -0.262 1.262 17 C -0.107 4.107 18 C 0.020 3.980 19 N -0.471 5.471 20 C 0.011 3.989 21 C 0.530 3.470 22 O -0.578 6.578 23 N -0.663 5.663 24 C 0.097 3.903 25 C -0.135 4.135 26 C 0.087 3.913 27 C 0.008 3.992 28 H 0.033 0.967 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.414 0.586 32 H 0.109 0.891 33 H 0.105 0.895 34 H 0.271 0.729 35 H 0.122 0.878 36 H 0.088 0.912 37 H 0.113 0.887 38 H 0.130 0.870 39 H 0.086 0.914 40 H 0.097 0.903 41 H 0.101 0.899 42 H 0.117 0.883 43 H 0.097 0.903 44 H 0.091 0.909 45 H 0.061 0.939 46 H 0.066 0.934 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.626 0.682 -33.224 33.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.051 3.949 3 H 0.083 0.917 4 N -0.363 5.363 5 C 0.322 3.678 6 O -0.443 6.443 7 C -0.283 4.283 8 S 0.079 5.921 9 C -0.696 4.696 10 H 0.100 0.900 11 C -0.191 4.191 12 N -0.547 5.547 13 Si 0.820 3.180 14 H -0.188 1.188 15 H -0.203 1.203 16 H -0.186 1.186 17 C -0.127 4.127 18 C -0.109 4.109 19 N -0.193 5.193 20 C -0.120 4.120 21 C 0.320 3.680 22 O -0.457 6.457 23 N -0.400 5.400 24 C -0.025 4.025 25 C -0.172 4.172 26 C -0.036 4.036 27 C -0.121 4.121 28 H 0.052 0.948 29 H 0.108 0.892 30 H 0.092 0.908 31 H 0.251 0.749 32 H 0.127 0.873 33 H 0.124 0.876 34 H 0.080 0.920 35 H 0.140 0.860 36 H 0.106 0.894 37 H 0.131 0.869 38 H 0.148 0.852 39 H 0.103 0.897 40 H 0.116 0.884 41 H 0.119 0.881 42 H 0.135 0.865 43 H 0.116 0.884 44 H 0.109 0.891 45 H 0.079 0.921 46 H 0.085 0.915 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.776 1.516 -33.159 33.203 hybrid contribution 1.033 -1.340 1.605 2.332 sum 0.257 0.177 -31.554 31.555 Atomic orbital electron populations 1.22108 0.93763 1.03203 1.02364 1.20972 0.95067 0.96048 0.82804 0.91659 1.45865 1.67432 1.14599 1.08396 1.19992 0.76643 0.86575 0.84585 1.90676 1.50818 1.17591 1.85187 1.23394 1.05346 1.03299 0.96255 1.85507 1.86627 1.17335 1.02670 1.23180 1.51026 0.98497 0.96938 0.90045 1.26124 0.95064 0.97234 1.00713 1.70173 1.46742 1.15455 1.22310 0.85010 0.79037 0.77778 0.76218 1.18809 1.20256 1.18614 1.22943 0.95028 1.01925 0.92780 1.23911 0.92571 1.01591 0.92786 1.68879 1.05226 1.35786 1.09432 1.22589 0.91804 0.95061 1.02541 1.20642 0.89644 0.81624 0.76063 1.90702 1.70716 1.31078 1.53241 1.49989 1.14050 1.22594 1.53371 1.23256 1.01496 0.84840 0.92896 1.23286 0.97160 1.01049 0.95731 1.23202 0.85100 1.00068 0.95189 1.23782 0.98177 1.00583 0.89541 0.94771 0.89193 0.90767 0.74881 0.87253 0.87643 0.91967 0.86044 0.89400 0.86864 0.85190 0.89668 0.88431 0.88134 0.86464 0.88435 0.89121 0.92071 0.91497 0.92273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.96 9.29 71.98 0.67 -2.30 16 2 C 0.16 3.35 2.47 44.99 0.11 3.47 16 3 H 0.07 1.73 7.33 -2.39 -0.02 1.71 16 4 N -0.71 -18.22 5.08 -442.53 -2.25 -20.47 16 5 C 0.54 20.05 7.81 87.66 0.68 20.73 16 6 O -0.56 -26.14 15.52 -3.04 -0.05 -26.19 16 7 C -0.13 -5.36 6.16 71.24 0.44 -4.92 16 8 S -0.15 -8.38 20.57 -56.49 -1.16 -9.54 16 9 C -0.55 -31.88 9.50 67.95 0.65 -31.24 16 10 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 11 C 0.01 0.78 5.49 84.86 0.47 1.24 16 12 N -0.91 -56.49 13.22 21.65 0.29 -56.21 16 13 Si 1.00 44.24 29.55 68.60 2.03 46.27 16 14 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 15 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 16 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 17 C -0.11 -1.77 3.64 -10.45 -0.04 -1.81 16 18 C 0.02 0.25 6.36 83.57 0.53 0.78 16 19 N -0.47 -8.89 6.06 -932.53 -5.65 -14.55 16 20 C 0.01 0.17 5.14 85.56 0.44 0.61 16 21 C 0.53 11.86 7.92 87.66 0.69 12.56 16 22 O -0.58 -18.95 16.54 -3.05 -0.05 -19.00 16 23 N -0.66 -10.30 3.69 -859.02 -3.17 -13.47 16 24 C 0.10 0.53 8.40 83.09 0.70 1.22 16 25 C -0.13 -0.51 8.48 30.85 0.26 -0.25 16 26 C 0.09 1.03 8.61 83.18 0.72 1.74 16 27 C 0.01 0.18 6.28 83.57 0.52 0.71 16 28 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.09 1.22 7.48 -2.38 -0.02 1.20 16 30 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.41 8.11 8.60 -92.71 -0.80 7.32 16 32 H 0.11 4.01 8.14 -2.40 -0.02 3.99 16 33 H 0.11 3.95 8.14 -2.40 -0.02 3.93 16 34 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 35 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.09 0.90 7.73 -2.39 -0.02 0.88 16 37 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.13 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.09 1.08 7.56 -2.38 -0.02 1.06 16 40 H 0.10 0.20 8.14 -2.39 -0.02 0.18 16 41 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 42 H 0.12 -0.08 8.14 -2.39 -0.02 -0.10 16 43 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 44 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.07 1.79 8.13 -2.38 -0.02 1.77 16 47 H 0.06 1.38 7.50 -2.39 -0.02 1.36 16 Total: -1.00 -88.46 403.41 -3.01 -91.47 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: 0.17 Total: 19.13 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: 6.84 Total: 2.56 kcal Atomic # 7 Polarization: -93.91 SS G_CDS: -10.79 Total: -104.69 kcal Atomic # 8 Polarization: -45.09 SS G_CDS: -0.10 Total: -45.19 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 16 Polarization: -8.38 SS G_CDS: -1.16 Total: -9.54 kcal Total: -88.46 -3.01 -91.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734108176.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.192 kcal (2) G-P(sol) polarization free energy of solvation -88.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds