Wall clock time and date at job start Wed Apr 1 2020 00:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47673 * 2 1 4 4 N 1.46496 * 109.47500 * 239.99026 * 2 1 3 5 5 C 1.34776 * 120.00023 * 85.00552 * 4 2 1 6 6 O 1.21280 * 119.99654 * 359.97438 * 5 4 2 7 7 C 1.50697 * 120.00067 * 180.02562 * 5 4 2 8 8 S 1.81002 * 109.47208 * 180.02562 * 7 5 4 9 9 C 1.76188 * 100.00345 * 179.97438 * 8 7 5 10 10 H 1.08008 * 120.00084 * 359.97438 * 9 8 7 11 11 C 1.38797 * 120.00395 * 180.02562 * 9 8 7 12 12 N 1.31632 * 120.00046 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 120.00236 * 179.97438 * 11 9 8 14 14 H 1.48495 * 109.46941 * 359.97438 * 13 11 9 15 15 H 1.48503 * 109.47062 * 119.99964 * 13 11 9 16 16 H 1.48502 * 109.46806 * 239.99649 * 13 11 9 17 17 C 1.53010 * 109.46844 * 119.99338 * 2 1 3 18 18 C 1.53935 * 113.73373 * 281.87373 * 17 2 1 19 19 N 1.48180 * 86.10289 * 221.95507 * 18 17 2 20 20 C 1.46902 * 111.07265 * 137.51689 * 19 18 17 21 21 C 1.50698 * 109.46685 * 90.56575 * 20 19 18 22 22 O 1.21285 * 120.00649 * 0.02562 * 21 20 19 23 23 N 1.34782 * 119.99814 * 179.97438 * 21 20 19 24 24 C 1.47063 * 136.05941 * 359.63922 * 23 21 20 25 25 C 1.53236 * 88.08224 * 207.19895 * 24 23 21 26 26 C 1.47065 * 136.05428 * 180.02562 * 23 21 20 27 27 C 1.47959 * 90.79907 * 24.59880 * 19 18 17 28 28 H 1.09001 * 109.46531 * 60.09472 * 1 2 3 29 29 H 1.08997 * 109.47192 * 180.08871 * 1 2 3 30 30 H 1.09000 * 109.47266 * 300.09595 * 1 2 3 31 31 H 0.97003 * 119.99977 * 265.00500 * 4 2 1 32 32 H 1.08998 * 109.47176 * 299.99652 * 7 5 4 33 33 H 1.09000 * 109.47215 * 59.99788 * 7 5 4 34 34 H 0.96991 * 120.00396 * 180.02562 * 12 11 9 35 35 H 1.09002 * 112.93761 * 53.43982 * 17 2 1 36 36 H 1.09003 * 113.75932 * 336.23937 * 18 17 2 37 37 H 1.09005 * 113.75841 * 107.59646 * 18 17 2 38 38 H 1.08998 * 109.47438 * 210.56674 * 20 19 18 39 39 H 1.08995 * 109.47220 * 330.57309 * 20 19 18 40 40 H 1.08996 * 113.46592 * 321.93203 * 24 23 21 41 41 H 1.09000 * 113.47033 * 92.37013 * 24 23 21 42 42 H 1.09003 * 114.32489 * 220.46488 * 25 24 23 43 43 H 1.08994 * 114.20111 * 87.72960 * 25 24 23 44 44 H 1.08999 * 113.47035 * 267.62668 * 26 23 21 45 45 H 1.08996 * 113.47255 * 38.07038 * 26 23 21 46 46 H 1.08996 * 113.76355 * 221.08028 * 27 19 18 47 47 H 1.09001 * 113.86085 * 89.73246 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6908 -1.1960 5 6 2.1473 -0.0186 -2.3570 6 8 1.8584 1.1580 -2.4117 7 6 2.6491 -0.7293 -3.5875 8 16 2.7111 0.4337 -4.9730 9 6 3.3142 -0.6316 -6.2401 10 1 3.5234 -1.6681 -6.0200 11 6 3.5215 -0.1386 -7.5209 12 7 3.2670 1.1247 -7.7891 13 14 4.1616 -1.2680 -8.8642 14 1 4.3674 -2.6299 -8.3094 15 1 3.1747 -1.3282 -9.9723 16 1 5.4521 -0.7433 -9.3787 17 6 2.0400 -0.7212 1.2494 18 6 1.9731 0.1329 2.5284 19 7 3.3107 -0.4200 2.8463 20 6 4.2036 0.6240 3.3666 21 6 4.0859 0.6832 4.8678 22 8 3.3327 -0.0703 5.4473 23 7 4.8185 1.5730 5.5666 24 6 5.8110 2.6103 5.2478 25 6 6.4026 2.4011 6.6458 26 6 4.9820 1.9290 6.9841 27 6 3.5699 -0.6728 1.4117 28 1 -0.3632 0.5124 -0.8909 29 1 -0.3633 -1.0276 0.0016 30 1 -0.3634 0.5153 0.8891 31 1 2.2491 -1.6320 -1.1523 32 1 3.6482 -1.1218 -3.3982 33 1 1.9762 -1.5511 -3.8323 34 1 3.4115 1.4691 -8.6843 35 1 1.6178 -1.7193 1.3658 36 1 1.9750 1.2065 2.3402 37 1 1.1922 -0.1769 3.2230 38 1 5.2326 0.3922 3.0916 39 1 3.9223 1.5876 2.9418 40 1 6.4907 2.3282 4.4437 41 1 5.3749 3.5989 5.1044 42 1 6.7001 3.3208 7.1496 43 1 7.1582 1.6174 6.6985 44 1 4.3227 2.7342 7.3083 45 1 4.9584 1.0690 7.6532 46 1 4.0627 -1.6250 1.2156 47 1 4.0402 0.1636 0.8945 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734108177.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:02:44 Heat of formation + Delta-G solvation = -22.746195 kcal Electronic energy + Delta-G solvation = -26562.677428 eV Core-core repulsion = 22680.222686 eV Total energy + Delta-G solvation = -3882.454742 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.73717 -41.00873 -40.19904 -38.62737 -36.30300 -34.57670 -33.06783 -31.84824 -30.30384 -29.69688 -27.66157 -27.10459 -27.03281 -26.06139 -23.53288 -22.46444 -21.58271 -20.80111 -19.95737 -19.71662 -18.19566 -17.87635 -17.69189 -17.32918 -16.87739 -16.80380 -16.60437 -16.36492 -16.08094 -15.87418 -15.36014 -14.83473 -14.65265 -14.58147 -14.24207 -14.04268 -13.84428 -13.76713 -13.48874 -13.48230 -13.25855 -13.14783 -13.03260 -12.90969 -12.59820 -12.54030 -12.37314 -12.01852 -11.88779 -11.69193 -11.67615 -11.65235 -11.15190 -10.88055 -10.85574 -10.25378 -10.15912 -9.79365 -9.74676 -8.64883 -8.34197 -6.11512 1.28417 1.41637 1.48138 1.55272 1.59129 1.65884 1.75953 2.24949 2.30042 2.83618 3.00098 3.30403 3.37296 3.43448 3.51368 3.66533 3.95861 3.98161 4.13018 4.14119 4.20102 4.24075 4.26969 4.31638 4.36760 4.41208 4.46328 4.49965 4.54380 4.59928 4.65682 4.70750 4.76881 4.79753 4.86402 4.98473 4.99221 5.17231 5.21201 5.29735 5.33355 5.43190 5.54743 5.87672 6.20891 6.56302 6.69038 7.07584 7.12947 7.29821 8.75181 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018385 B = 0.001810 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.585547 B =15466.141531 C =16243.299900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.156 3.844 3 H 0.068 0.932 4 N -0.706 5.706 5 C 0.537 3.463 6 O -0.565 6.565 7 C -0.130 4.130 8 S -0.151 6.151 9 C -0.545 4.545 10 H 0.082 0.918 11 C 0.013 3.987 12 N -0.911 5.911 13 Si 0.998 3.002 14 H -0.257 1.257 15 H -0.275 1.275 16 H -0.274 1.274 17 C -0.106 4.106 18 C 0.018 3.982 19 N -0.480 5.480 20 C 0.011 3.989 21 C 0.536 3.464 22 O -0.574 6.574 23 N -0.664 5.664 24 C 0.095 3.905 25 C -0.137 4.137 26 C 0.091 3.909 27 C 0.013 3.987 28 H 0.034 0.966 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.416 0.584 32 H 0.110 0.890 33 H 0.107 0.893 34 H 0.271 0.729 35 H 0.120 0.880 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.117 0.883 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.103 0.897 42 H 0.118 0.882 43 H 0.094 0.906 44 H 0.095 0.905 45 H 0.062 0.938 46 H 0.104 0.896 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.484 -0.766 29.151 29.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.051 3.949 3 H 0.086 0.914 4 N -0.360 5.360 5 C 0.323 3.677 6 O -0.443 6.443 7 C -0.282 4.282 8 S 0.076 5.924 9 C -0.693 4.693 10 H 0.101 0.899 11 C -0.191 4.191 12 N -0.548 5.548 13 Si 0.820 3.180 14 H -0.180 1.180 15 H -0.200 1.200 16 H -0.199 1.199 17 C -0.125 4.125 18 C -0.111 4.111 19 N -0.203 5.203 20 C -0.121 4.121 21 C 0.326 3.674 22 O -0.453 6.453 23 N -0.401 5.401 24 C -0.027 4.027 25 C -0.175 4.175 26 C -0.032 4.032 27 C -0.115 4.115 28 H 0.054 0.946 29 H 0.091 0.909 30 H 0.098 0.902 31 H 0.253 0.747 32 H 0.128 0.872 33 H 0.126 0.874 34 H 0.080 0.920 35 H 0.138 0.862 36 H 0.095 0.905 37 H 0.107 0.893 38 H 0.134 0.866 39 H 0.104 0.896 40 H 0.108 0.892 41 H 0.121 0.879 42 H 0.136 0.864 43 H 0.112 0.888 44 H 0.114 0.886 45 H 0.080 0.920 46 H 0.122 0.878 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.556 0.230 29.636 29.985 hybrid contribution 0.484 -1.247 -1.374 1.917 sum 5.041 -1.017 28.263 28.727 Atomic orbital electron populations 1.22120 0.94675 1.02989 1.01975 1.20959 0.94560 0.96280 0.83083 0.91409 1.45779 1.67400 1.14604 1.08186 1.19998 0.76621 0.86536 0.84532 1.90687 1.50749 1.17777 1.85136 1.23383 1.05555 1.03147 0.96073 1.85550 1.86714 1.17258 1.02832 1.23246 1.50679 0.98494 0.96906 0.89945 1.26111 0.95129 0.97173 1.00734 1.70184 1.46951 1.15442 1.22209 0.84920 0.77829 0.78264 0.77026 1.18049 1.20018 1.19930 1.23168 0.96011 1.01120 0.92191 1.24041 0.93147 0.98209 0.95679 1.68404 1.02514 1.32953 1.16402 1.22537 1.01278 0.97060 0.91185 1.20535 0.78060 0.79008 0.89829 1.90678 1.39387 1.43031 1.72174 1.49990 1.43401 1.35661 1.11032 1.23249 0.88415 0.91428 0.99580 1.23283 0.94769 1.03816 0.95605 1.23175 0.97271 0.99795 0.82917 1.24019 0.96508 1.03345 0.87628 0.94631 0.90903 0.90181 0.74732 0.87157 0.87432 0.92025 0.86226 0.90515 0.89338 0.86552 0.89556 0.89209 0.87868 0.86387 0.88777 0.88649 0.91975 0.87811 0.90780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.27 9.44 71.98 0.68 -2.59 16 2 C 0.16 3.24 2.29 45.00 0.10 3.34 16 3 H 0.07 1.72 7.48 -2.39 -0.02 1.70 16 4 N -0.71 -16.45 4.94 -442.53 -2.19 -18.64 16 5 C 0.54 18.87 7.81 87.66 0.68 19.55 16 6 O -0.57 -25.23 15.53 -3.03 -0.05 -25.28 16 7 C -0.13 -5.00 6.16 71.23 0.44 -4.56 16 8 S -0.15 -8.25 20.57 -56.49 -1.16 -9.41 16 9 C -0.55 -30.85 9.50 67.95 0.65 -30.20 16 10 H 0.08 4.33 7.80 -2.91 -0.02 4.31 16 11 C 0.01 0.75 5.49 84.86 0.47 1.21 16 12 N -0.91 -55.61 13.22 21.65 0.29 -55.33 16 13 Si 1.00 43.28 29.55 68.60 2.03 45.31 16 14 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 15 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 16 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 17 C -0.11 -1.67 3.35 -10.15 -0.03 -1.70 16 18 C 0.02 0.32 7.42 86.37 0.64 0.97 16 19 N -0.48 -9.26 5.65 -911.78 -5.15 -14.41 16 20 C 0.01 0.18 5.11 85.56 0.44 0.62 16 21 C 0.54 11.67 8.12 87.66 0.71 12.39 16 22 O -0.57 -17.96 17.21 -3.04 -0.05 -18.01 16 23 N -0.66 -9.97 3.69 -859.08 -3.17 -13.14 16 24 C 0.09 0.58 8.40 83.09 0.70 1.27 16 25 C -0.14 -0.54 8.48 30.83 0.26 -0.28 16 26 C 0.09 0.95 8.61 83.17 0.72 1.67 16 27 C 0.01 0.21 7.38 86.41 0.64 0.85 16 28 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.08 1.37 8.08 -2.39 -0.02 1.35 16 31 H 0.42 6.96 8.60 -92.71 -0.80 6.16 16 32 H 0.11 3.77 8.14 -2.40 -0.02 3.75 16 33 H 0.11 3.74 8.14 -2.39 -0.02 3.72 16 34 H 0.27 15.29 8.31 -92.72 -0.77 14.52 16 35 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.08 1.27 7.38 -2.39 -0.02 1.25 16 37 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 38 H 0.12 1.55 8.08 -2.39 -0.02 1.53 16 39 H 0.09 1.20 7.39 -2.39 -0.02 1.18 16 40 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 41 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 42 H 0.12 -0.10 8.14 -2.39 -0.02 -0.12 16 43 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 44 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 46 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 47 H 0.07 1.22 7.88 -2.39 -0.02 1.20 16 Total: -1.00 -85.42 406.11 -2.20 -87.63 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: 0.17 Total: 18.73 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: 7.09 Total: 2.54 kcal Atomic # 7 Polarization: -91.29 SS G_CDS: -10.22 Total: -101.51 kcal Atomic # 8 Polarization: -43.19 SS G_CDS: -0.10 Total: -43.29 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Atomic # 16 Polarization: -8.25 SS G_CDS: -1.16 Total: -9.41 kcal Total: -85.42 -2.20 -87.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734108177.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.882 kcal (2) G-P(sol) polarization free energy of solvation -85.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds