Wall clock time and date at job start Wed Apr 1 2020 00:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34776 * 120.00076 * 2 1 4 4 O 1.21279 * 120.00107 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00077 * 180.02562 * 3 2 1 6 6 H 1.09003 * 109.47221 * 59.99966 * 5 3 2 7 7 C 1.53004 * 109.47241 * 299.99995 * 5 3 2 8 8 N 1.46902 * 109.47132 * 179.97438 * 5 3 2 9 9 C 1.48556 * 111.00056 * 289.97574 * 8 5 3 10 10 C 1.54375 * 104.59614 * 200.96116 * 9 8 5 11 11 H 1.08999 * 117.60437 * 244.72004 * 10 9 8 12 12 C 1.53003 * 118.13257 * 89.19299 * 10 9 8 13 13 H 1.09001 * 117.44089 * 14.42499 * 12 10 9 14 14 C 1.52999 * 117.44432 * 159.13080 * 12 10 9 15 15 N 1.46501 * 109.46909 * 185.00171 * 14 12 10 16 16 C 1.34775 * 120.00117 * 179.97438 * 15 14 12 17 17 O 1.21283 * 120.00026 * 0.02562 * 16 15 14 18 18 C 1.50700 * 120.00425 * 179.97438 * 16 15 14 19 19 S 1.80993 * 109.47252 * 180.02562 * 18 16 15 20 20 C 1.76205 * 99.99900 * 180.02562 * 19 18 16 21 21 H 1.07997 * 120.00182 * 359.97438 * 20 19 18 22 22 C 1.38799 * 119.99833 * 180.02562 * 20 19 18 23 23 N 1.31629 * 119.99974 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 120.00134 * 359.97438 * 22 20 19 25 25 H 1.48497 * 109.47500 * 90.00005 * 24 22 20 26 26 H 1.48505 * 109.47015 * 209.99921 * 24 22 20 27 27 H 1.48498 * 109.47202 * 329.99638 * 24 22 20 28 28 C 1.54267 * 105.06252 * 23.84895 * 10 9 8 29 29 H 1.08999 * 121.79142 * 223.88903 * 28 10 9 30 30 C 1.48559 * 110.99997 * 174.55291 * 8 5 3 31 31 H 1.09003 * 109.47086 * 299.99915 * 1 2 3 32 32 H 1.08993 * 109.47597 * 60.00009 * 1 2 3 33 33 H 1.09009 * 109.47156 * 180.02562 * 1 2 3 34 34 H 0.97007 * 119.99927 * 180.02562 * 2 1 3 35 35 H 1.08997 * 109.47148 * 54.18656 * 7 5 3 36 36 H 1.09001 * 109.47289 * 174.18889 * 7 5 3 37 37 H 1.09003 * 109.46982 * 294.19114 * 7 5 3 38 38 H 1.08996 * 110.41180 * 82.17886 * 9 8 5 39 39 H 1.09001 * 110.41241 * 319.73819 * 9 8 5 40 40 H 1.08998 * 109.47542 * 305.00412 * 14 12 10 41 41 H 1.08998 * 109.46966 * 65.00675 * 14 12 10 42 42 H 0.97001 * 120.00024 * 0.02562 * 15 14 12 43 43 H 1.08998 * 109.47114 * 300.00712 * 18 16 15 44 44 H 1.09003 * 109.46858 * 60.00113 * 18 16 15 45 45 H 0.96996 * 120.00389 * 179.97438 * 23 22 20 46 46 H 1.08995 * 110.41707 * 277.82251 * 30 8 5 47 47 H 1.09003 * 110.41247 * 40.14790 * 30 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6458 1.1672 -0.0006 6 1 4.0088 0.6535 -0.8908 7 6 4.1563 0.4456 1.2483 8 7 4.1355 2.5522 -0.0011 9 6 3.8658 3.2118 -1.3046 10 6 4.8640 4.3881 -1.3593 11 1 4.4544 5.3982 -1.3634 12 6 6.2474 4.1330 -1.9609 13 1 6.3841 3.2169 -2.5355 14 6 7.0343 5.3467 -2.4594 15 7 8.2701 4.8961 -3.1043 16 6 9.1270 5.7977 -3.6232 17 8 8.8752 6.9822 -3.5558 18 6 10.3986 5.3343 -4.2861 19 16 11.3294 6.7701 -4.8760 20 6 12.7238 5.9600 -5.5860 21 1 12.7935 4.8826 -5.5602 22 6 13.7333 6.7067 -6.1776 23 7 14.7752 6.1016 -6.7076 24 14 13.6132 8.5703 -6.2217 25 1 14.2483 9.1363 -5.0045 26 1 14.3112 9.0829 -7.4281 27 1 12.1847 8.9734 -6.2677 28 6 6.0146 3.9817 -0.4155 29 1 6.4521 4.6854 0.2927 30 6 5.6147 2.5939 0.1300 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3634 -1.0277 0.0005 34 1 1.9500 -0.8401 -0.0004 35 1 3.7106 -0.5476 1.3019 36 1 5.2414 0.3547 1.1974 37 1 3.8808 1.0158 2.1355 38 1 2.8408 3.5810 -1.3389 39 1 4.0490 2.5193 -2.1262 40 1 6.4307 5.9009 -3.1781 41 1 7.2791 5.9923 -1.6161 42 1 8.4714 3.9487 -3.1585 43 1 11.0023 4.7807 -3.5670 44 1 10.1541 4.6879 -5.1291 45 1 15.4805 6.6233 -7.1213 46 1 5.9066 2.4980 1.1757 47 1 6.0716 1.8035 -0.4655 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734153877.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:19 Heat of formation + Delta-G solvation = -28.814451 kcal Electronic energy + Delta-G solvation = -26241.153252 eV Core-core repulsion = 22358.435370 eV Total energy + Delta-G solvation = -3882.717882 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.93338 -39.68586 -39.02626 -35.97886 -35.09755 -34.13426 -32.43729 -31.35521 -29.69358 -28.97881 -27.33595 -26.72641 -25.59488 -24.43312 -22.32284 -21.09961 -20.63838 -20.43212 -20.09583 -17.94746 -17.78231 -17.10757 -16.48839 -16.22048 -15.99174 -15.51419 -15.42094 -15.00941 -14.95256 -14.54517 -14.50797 -13.87409 -13.81503 -13.53544 -13.42488 -13.18401 -13.02367 -12.86400 -12.83181 -12.79232 -12.63960 -12.42240 -11.97680 -11.84883 -11.61847 -11.49235 -11.26169 -11.00371 -10.63079 -10.44321 -10.26479 -10.06780 -9.85095 -9.64116 -9.51730 -9.01259 -8.94181 -8.88225 -8.49647 -6.91444 -6.28795 -4.00487 2.18566 2.55741 2.73991 2.97194 3.09060 3.28960 3.33987 3.46863 3.51413 3.67048 4.01387 4.17481 4.29318 4.33649 4.41809 4.49116 4.58563 4.70227 4.73981 4.75949 4.85232 4.89844 4.97686 4.99801 5.05298 5.09794 5.10403 5.20170 5.28650 5.29296 5.39749 5.51805 5.58496 5.60102 5.76547 5.78234 5.82418 5.87690 5.94354 6.01560 6.29553 6.40306 6.52600 6.95678 7.60832 7.77008 7.94240 8.41558 8.49151 9.17513 10.80428 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.034082 B = 0.001552 C = 0.001529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.342059 B =18035.640903 C =18311.892346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.739 5.739 3 C 0.517 3.483 4 O -0.516 6.516 5 C 0.053 3.947 6 H 0.069 0.931 7 C -0.145 4.145 8 N -0.488 5.488 9 C 0.061 3.939 10 C -0.146 4.146 11 H 0.121 0.879 12 C -0.130 4.130 13 H 0.107 0.893 14 C 0.155 3.845 15 N -0.735 5.735 16 C 0.530 3.470 17 O -0.520 6.520 18 C -0.124 4.124 19 S -0.142 6.142 20 C -0.522 4.522 21 H 0.088 0.912 22 C 0.096 3.904 23 N -0.881 5.881 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 C -0.159 4.159 29 H 0.124 0.876 30 C 0.062 3.938 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.401 0.599 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.100 0.900 39 H 0.043 0.957 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.400 0.600 43 H 0.097 0.903 44 H 0.097 0.903 45 H 0.271 0.729 46 H 0.090 0.910 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.856 -17.666 15.932 35.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.392 5.392 3 C 0.302 3.698 4 O -0.390 6.390 5 C -0.060 4.060 6 H 0.087 0.913 7 C -0.203 4.203 8 N -0.213 5.213 9 C -0.066 4.066 10 C -0.166 4.166 11 H 0.139 0.861 12 C -0.149 4.149 13 H 0.125 0.875 14 C 0.031 3.969 15 N -0.389 5.389 16 C 0.316 3.684 17 O -0.394 6.394 18 C -0.274 4.274 19 S 0.085 5.915 20 C -0.669 4.669 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.517 5.517 24 Si 0.681 3.319 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.159 1.159 28 C -0.178 4.178 29 H 0.142 0.858 30 C -0.065 4.065 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.094 0.906 34 H 0.234 0.766 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.118 0.882 39 H 0.061 0.939 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.234 0.766 43 H 0.115 0.885 44 H 0.115 0.885 45 H 0.081 0.919 46 H 0.109 0.891 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -27.870 -14.631 16.415 35.500 hybrid contribution 1.149 -2.097 -0.890 2.552 sum -26.721 -16.728 15.525 35.141 Atomic orbital electron populations 1.21528 0.79357 1.02233 1.02445 1.45801 1.07848 1.08658 1.76920 1.20466 0.89601 0.83721 0.75987 1.90716 1.69914 1.31037 1.47308 1.21778 0.92384 0.91602 1.00193 0.91315 1.21857 1.02051 0.99594 0.96763 1.65462 1.11166 1.12625 1.32011 1.22736 1.00459 0.94246 0.89130 1.23456 0.88935 1.00250 1.03909 0.86066 1.23281 0.97675 0.99873 0.94056 0.87494 1.20698 0.84773 0.94010 0.97432 1.45926 1.21912 1.10117 1.60964 1.20276 0.84345 0.86068 0.77687 1.90706 1.75513 1.16556 1.56655 1.23274 0.96341 1.04666 1.03157 1.84801 1.23161 1.09025 1.74559 1.22321 1.04877 0.96658 1.43083 0.89402 1.24708 0.93937 0.99161 0.93457 1.69935 1.08850 1.36389 1.36546 0.86735 0.81362 0.85142 0.78616 1.19196 1.19936 1.15919 1.24213 1.03851 0.98183 0.91570 0.85819 1.22666 0.87117 0.95147 1.01605 0.92155 0.92212 0.90630 0.76587 0.91603 0.91054 0.90800 0.88206 0.93929 0.90769 0.91101 0.76635 0.88480 0.88470 0.91947 0.89134 0.93355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.37 10.70 59.84 0.64 1.01 16 2 N -0.74 -3.47 5.57 -67.08 -0.37 -3.84 16 3 C 0.52 4.13 6.96 -10.99 -0.08 4.06 16 4 O -0.52 -6.34 14.85 5.56 0.08 -6.26 16 5 C 0.05 0.33 2.30 -68.86 -0.16 0.17 16 6 H 0.07 0.34 7.88 -51.93 -0.41 -0.06 16 7 C -0.14 -0.60 8.69 37.16 0.32 -0.27 16 8 N -0.49 -4.06 4.89 -223.41 -1.09 -5.15 16 9 C 0.06 0.54 5.60 -2.19 -0.01 0.53 16 10 C -0.15 -1.25 6.70 -89.24 -0.60 -1.85 16 11 H 0.12 1.06 8.14 -51.93 -0.42 0.63 16 12 C -0.13 -1.07 5.54 -88.44 -0.49 -1.56 16 13 H 0.11 0.80 8.04 -51.93 -0.42 0.38 16 14 C 0.15 1.71 5.98 -4.04 -0.02 1.68 16 15 N -0.73 -9.16 5.56 -60.30 -0.33 -9.49 16 16 C 0.53 9.37 7.85 -10.99 -0.09 9.29 16 17 O -0.52 -11.27 15.86 5.55 0.09 -11.19 16 18 C -0.12 -2.38 6.16 36.01 0.22 -2.15 16 19 S -0.14 -3.60 18.55 -107.50 -1.99 -5.60 16 20 C -0.52 -15.04 10.04 30.94 0.31 -14.73 16 21 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 22 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 23 N -0.88 -26.56 13.97 55.49 0.78 -25.78 16 24 Si 0.86 21.84 27.74 -169.99 -4.71 17.12 16 25 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 27 H -0.24 -6.00 6.74 56.52 0.38 -5.62 16 28 C -0.16 -1.28 6.99 -87.06 -0.61 -1.89 16 29 H 0.12 1.01 8.14 -51.93 -0.42 0.58 16 30 C 0.06 0.43 4.98 -2.18 -0.01 0.42 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.10 8.14 -51.92 -0.42 -0.33 16 34 H 0.40 0.67 8.18 -40.82 -0.33 0.34 16 35 H 0.07 0.14 7.41 -51.93 -0.38 -0.25 16 36 H 0.07 0.25 7.17 -51.93 -0.37 -0.13 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.10 1.06 6.92 -51.93 -0.36 0.70 16 39 H 0.04 0.34 7.81 -51.93 -0.41 -0.06 16 40 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.07 0.85 8.00 -51.93 -0.42 0.43 16 42 H 0.40 3.80 8.40 -40.82 -0.34 3.46 16 43 H 0.10 1.72 8.14 -51.92 -0.42 1.30 16 44 H 0.10 1.73 8.14 -51.91 -0.42 1.30 16 45 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 46 H 0.09 0.57 7.79 -51.93 -0.40 0.17 16 47 H 0.05 0.29 7.99 -51.93 -0.42 -0.12 16 LS Contribution 397.14 15.07 5.98 5.98 Total: -1.00 -37.13 397.14 -9.89 -47.02 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -7.64 Total: -0.22 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: -0.66 Total: -2.60 kcal Atomic # 7 Polarization: -43.24 SS G_CDS: -1.03 Total: -44.27 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: 0.17 Total: -17.44 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.71 Total: 17.12 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -1.99 Total: -5.60 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -37.13 -9.89 -47.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734153877.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.205 kcal (2) G-P(sol) polarization free energy of solvation -37.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds