Wall clock time and date at job start Wed Apr 1 2020 00:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34776 * 120.00076 * 2 1 4 4 O 1.21279 * 120.00107 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00077 * 180.02562 * 3 2 1 6 6 H 1.09003 * 109.47221 * 59.99966 * 5 3 2 7 7 C 1.53004 * 109.47241 * 299.99995 * 5 3 2 8 8 N 1.46902 * 109.47132 * 179.97438 * 5 3 2 9 9 C 1.48556 * 111.00056 * 289.97574 * 8 5 3 10 10 C 1.54375 * 104.59614 * 200.96116 * 9 8 5 11 11 H 1.08999 * 117.60437 * 244.72004 * 10 9 8 12 12 C 1.53003 * 118.13257 * 89.19299 * 10 9 8 13 13 H 1.09001 * 117.44089 * 14.42499 * 12 10 9 14 14 C 1.52999 * 117.44432 * 159.13080 * 12 10 9 15 15 N 1.46501 * 109.46909 * 185.00171 * 14 12 10 16 16 C 1.34775 * 120.00117 * 179.97438 * 15 14 12 17 17 O 1.21283 * 120.00026 * 0.02562 * 16 15 14 18 18 C 1.50700 * 120.00425 * 179.97438 * 16 15 14 19 19 S 1.80993 * 109.47252 * 180.02562 * 18 16 15 20 20 C 1.76205 * 99.99900 * 180.02562 * 19 18 16 21 21 H 1.07997 * 120.00182 * 359.97438 * 20 19 18 22 22 C 1.38799 * 119.99833 * 180.02562 * 20 19 18 23 23 N 1.31629 * 119.99974 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 120.00134 * 359.97438 * 22 20 19 25 25 H 1.48497 * 109.47500 * 90.00005 * 24 22 20 26 26 H 1.48505 * 109.47015 * 209.99921 * 24 22 20 27 27 H 1.48498 * 109.47202 * 329.99638 * 24 22 20 28 28 C 1.54267 * 105.06252 * 23.84895 * 10 9 8 29 29 H 1.08999 * 121.79142 * 223.88903 * 28 10 9 30 30 C 1.48559 * 110.99997 * 174.55291 * 8 5 3 31 31 H 1.09003 * 109.47086 * 299.99915 * 1 2 3 32 32 H 1.08993 * 109.47597 * 60.00009 * 1 2 3 33 33 H 1.09009 * 109.47156 * 180.02562 * 1 2 3 34 34 H 0.97007 * 119.99927 * 180.02562 * 2 1 3 35 35 H 1.08997 * 109.47148 * 54.18656 * 7 5 3 36 36 H 1.09001 * 109.47289 * 174.18889 * 7 5 3 37 37 H 1.09003 * 109.46982 * 294.19114 * 7 5 3 38 38 H 1.08996 * 110.41180 * 82.17886 * 9 8 5 39 39 H 1.09001 * 110.41241 * 319.73819 * 9 8 5 40 40 H 1.08998 * 109.47542 * 305.00412 * 14 12 10 41 41 H 1.08998 * 109.46966 * 65.00675 * 14 12 10 42 42 H 0.97001 * 120.00024 * 0.02562 * 15 14 12 43 43 H 1.08998 * 109.47114 * 300.00712 * 18 16 15 44 44 H 1.09003 * 109.46858 * 60.00113 * 18 16 15 45 45 H 0.96996 * 120.00389 * 179.97438 * 23 22 20 46 46 H 1.08995 * 110.41707 * 277.82251 * 30 8 5 47 47 H 1.09003 * 110.41247 * 40.14790 * 30 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6458 1.1672 -0.0006 6 1 4.0088 0.6535 -0.8908 7 6 4.1563 0.4456 1.2483 8 7 4.1355 2.5522 -0.0011 9 6 3.8658 3.2118 -1.3046 10 6 4.8640 4.3881 -1.3593 11 1 4.4544 5.3982 -1.3634 12 6 6.2474 4.1330 -1.9609 13 1 6.3841 3.2169 -2.5355 14 6 7.0343 5.3467 -2.4594 15 7 8.2701 4.8961 -3.1043 16 6 9.1270 5.7977 -3.6232 17 8 8.8752 6.9822 -3.5558 18 6 10.3986 5.3343 -4.2861 19 16 11.3294 6.7701 -4.8760 20 6 12.7238 5.9600 -5.5860 21 1 12.7935 4.8826 -5.5602 22 6 13.7333 6.7067 -6.1776 23 7 14.7752 6.1016 -6.7076 24 14 13.6132 8.5703 -6.2217 25 1 14.2483 9.1363 -5.0045 26 1 14.3112 9.0829 -7.4281 27 1 12.1847 8.9734 -6.2677 28 6 6.0146 3.9817 -0.4155 29 1 6.4521 4.6854 0.2927 30 6 5.6147 2.5939 0.1300 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3634 -1.0277 0.0005 34 1 1.9500 -0.8401 -0.0004 35 1 3.7106 -0.5476 1.3019 36 1 5.2414 0.3547 1.1974 37 1 3.8808 1.0158 2.1355 38 1 2.8408 3.5810 -1.3389 39 1 4.0490 2.5193 -2.1262 40 1 6.4307 5.9009 -3.1781 41 1 7.2791 5.9923 -1.6161 42 1 8.4714 3.9487 -3.1585 43 1 11.0023 4.7807 -3.5670 44 1 10.1541 4.6879 -5.1291 45 1 15.4805 6.6233 -7.1213 46 1 5.9066 2.4980 1.1757 47 1 6.0716 1.8035 -0.4655 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734153877.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:18 Heat of formation + Delta-G solvation = -58.249493 kcal Electronic energy + Delta-G solvation = -26242.429651 eV Core-core repulsion = 22358.435370 eV Total energy + Delta-G solvation = -3883.994281 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.53986 -40.67978 -40.01677 -36.75323 -35.64994 -35.14994 -34.66231 -32.12148 -30.92787 -29.56881 -27.99701 -27.75243 -27.45835 -25.01755 -22.96283 -22.07287 -21.36429 -21.17834 -20.85619 -19.85314 -18.34712 -17.90951 -17.70336 -17.29578 -17.05250 -16.68666 -16.58732 -16.22999 -15.79339 -15.51677 -15.14879 -15.07992 -14.91403 -14.85422 -14.62431 -14.06714 -13.86614 -13.76315 -13.50835 -13.34105 -13.30575 -13.18992 -13.07557 -12.99764 -12.93627 -12.66243 -12.40118 -12.23340 -12.12838 -11.86176 -11.25636 -11.16392 -10.94115 -10.86963 -10.73288 -10.52316 -10.13261 -10.08896 -9.42957 -8.98785 -8.50891 -6.21559 0.99652 1.32067 1.47544 1.56032 1.56783 1.62129 2.11706 2.15471 2.25989 2.49928 2.72493 2.87569 2.93410 3.34970 3.61985 3.78154 3.80586 3.94568 4.00918 4.10720 4.15186 4.19882 4.23475 4.25191 4.43434 4.46598 4.48678 4.49327 4.60753 4.65259 4.69840 4.75904 4.85218 4.93516 4.94541 5.02585 5.15819 5.21422 5.24936 5.41995 5.44375 5.71496 5.74098 5.90175 6.12193 6.47314 6.57317 6.94606 7.19572 7.28408 8.61406 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.034082 B = 0.001552 C = 0.001529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.342059 B =18035.640903 C =18311.892346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.724 5.724 3 C 0.510 3.490 4 O -0.569 6.569 5 C 0.053 3.947 6 H 0.089 0.911 7 C -0.140 4.140 8 N -0.509 5.509 9 C 0.068 3.932 10 C -0.154 4.154 11 H 0.113 0.887 12 C -0.117 4.117 13 H 0.125 0.875 14 C 0.156 3.844 15 N -0.708 5.708 16 C 0.535 3.465 17 O -0.565 6.565 18 C -0.110 4.110 19 S -0.179 6.179 20 C -0.529 4.529 21 H 0.064 0.936 22 C 0.047 3.953 23 N -0.916 5.916 24 Si 0.913 3.087 25 H -0.262 1.262 26 H -0.259 1.259 27 H -0.238 1.238 28 C -0.156 4.156 29 H 0.121 0.879 30 C 0.066 3.934 31 H 0.046 0.954 32 H 0.045 0.955 33 H 0.110 0.890 34 H 0.418 0.582 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.056 0.944 38 H 0.074 0.926 39 H 0.052 0.948 40 H 0.066 0.934 41 H 0.063 0.937 42 H 0.418 0.582 43 H 0.115 0.885 44 H 0.115 0.885 45 H 0.277 0.723 46 H 0.098 0.902 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.444 -19.687 16.716 37.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.378 5.378 3 C 0.296 3.704 4 O -0.447 6.447 5 C -0.059 4.059 6 H 0.106 0.894 7 C -0.197 4.197 8 N -0.234 5.234 9 C -0.059 4.059 10 C -0.174 4.174 11 H 0.131 0.869 12 C -0.136 4.136 13 H 0.143 0.857 14 C 0.033 3.967 15 N -0.362 5.362 16 C 0.320 3.680 17 O -0.444 6.444 18 C -0.261 4.261 19 S 0.048 5.952 20 C -0.676 4.676 21 H 0.082 0.918 22 C -0.158 4.158 23 N -0.554 5.554 24 Si 0.735 3.265 25 H -0.187 1.187 26 H -0.183 1.183 27 H -0.162 1.162 28 C -0.175 4.175 29 H 0.139 0.861 30 C -0.060 4.060 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.129 0.871 34 H 0.255 0.745 35 H 0.107 0.893 36 H 0.102 0.898 37 H 0.075 0.925 38 H 0.092 0.908 39 H 0.070 0.930 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.256 0.744 43 H 0.134 0.866 44 H 0.133 0.867 45 H 0.086 0.914 46 H 0.116 0.884 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -28.466 -16.760 17.214 37.250 hybrid contribution 1.193 -1.634 -1.057 2.283 sum -27.273 -18.394 16.158 36.650 Atomic orbital electron populations 1.21619 0.79019 1.04107 1.01119 1.45737 1.08199 1.08639 1.75206 1.20932 0.90554 0.83716 0.75192 1.90697 1.71010 1.32988 1.50026 1.21872 0.91056 0.90900 1.02026 0.89387 1.21865 1.02928 1.00156 0.94799 1.65394 1.12102 1.14187 1.31711 1.22570 0.98976 0.94438 0.89938 1.23424 0.89222 1.00007 1.04734 0.86931 1.23093 0.96756 0.99139 0.94569 0.85676 1.20729 0.83988 0.95223 0.96797 1.45665 1.21160 1.10405 1.58932 1.19973 0.84358 0.85896 0.77765 1.90699 1.76432 1.18461 1.58771 1.23262 0.96581 1.01936 1.04325 1.84755 1.22784 1.12850 1.74834 1.22464 1.06301 0.95805 1.43055 0.91825 1.25536 0.93704 1.03389 0.93209 1.70010 1.09716 1.38185 1.37538 0.85883 0.81249 0.80091 0.79247 1.18716 1.18348 1.16178 1.24305 1.02940 0.98990 0.91239 0.86065 1.22686 0.86318 0.94720 1.02320 0.93520 0.93587 0.87101 0.74534 0.89270 0.89803 0.92493 0.90791 0.93034 0.91626 0.91888 0.74431 0.86638 0.86654 0.91383 0.88362 0.91657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.62 10.70 127.77 1.37 1.99 16 2 N -0.72 -5.60 5.57 -484.53 -2.70 -8.29 16 3 C 0.51 7.75 6.96 87.66 0.61 8.36 16 4 O -0.57 -14.44 14.85 -3.03 -0.04 -14.48 16 5 C 0.05 0.56 2.30 44.17 0.10 0.66 16 6 H 0.09 0.59 7.88 -2.39 -0.02 0.58 16 7 C -0.14 -0.78 8.69 71.98 0.63 -0.15 16 8 N -0.51 -7.77 4.89 -860.73 -4.21 -11.98 16 9 C 0.07 1.15 5.60 86.45 0.48 1.64 16 10 C -0.15 -2.51 6.70 -9.90 -0.07 -2.58 16 11 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 12 C -0.12 -1.66 5.54 -9.38 -0.05 -1.72 16 13 H 0.13 1.39 8.04 -2.39 -0.02 1.37 16 14 C 0.16 3.18 5.98 86.38 0.52 3.70 16 15 N -0.71 -15.87 5.56 -463.06 -2.57 -18.44 16 16 C 0.53 18.00 7.85 87.66 0.69 18.69 16 17 O -0.57 -24.16 15.86 -3.04 -0.05 -24.21 16 18 C -0.11 -4.04 6.16 71.24 0.44 -3.61 16 19 S -0.18 -9.00 18.55 -56.49 -1.05 -10.05 16 20 C -0.53 -30.61 10.04 67.95 0.68 -29.93 16 21 H 0.06 3.86 8.03 -2.91 -0.02 3.84 16 22 C 0.05 2.75 5.50 84.86 0.47 3.22 16 23 N -0.92 -55.57 13.97 21.65 0.30 -55.27 16 24 Si 0.91 45.01 27.74 68.60 1.90 46.91 16 25 H -0.26 -12.63 7.11 99.48 0.71 -11.92 16 26 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 27 H -0.24 -11.74 6.74 99.48 0.67 -11.07 16 28 C -0.16 -2.21 6.99 -8.49 -0.06 -2.27 16 29 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 30 C 0.07 0.75 4.98 86.45 0.43 1.18 16 31 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.11 0.00 8.14 -2.38 -0.02 -0.02 16 34 H 0.42 0.20 8.18 -92.70 -0.76 -0.56 16 35 H 0.09 0.06 7.41 -2.39 -0.02 0.05 16 36 H 0.08 0.28 7.17 -2.39 -0.02 0.27 16 37 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.07 1.64 6.92 -2.39 -0.02 1.63 16 39 H 0.05 0.75 7.81 -2.39 -0.02 0.73 16 40 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.06 1.43 8.00 -2.39 -0.02 1.42 16 42 H 0.42 6.44 8.40 -92.71 -0.78 5.66 16 43 H 0.12 3.84 8.14 -2.40 -0.02 3.82 16 44 H 0.12 3.84 8.14 -2.39 -0.02 3.82 16 45 H 0.28 15.52 8.31 -92.71 -0.77 14.75 16 46 H 0.10 0.98 7.79 -2.39 -0.02 0.96 16 47 H 0.07 0.54 7.99 -2.39 -0.02 0.52 16 Total: -1.00 -82.62 397.14 -2.77 -85.39 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -0.59 Total: 11.24 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: 6.23 Total: -0.81 kcal Atomic # 7 Polarization: -84.81 SS G_CDS: -9.18 Total: -93.98 kcal Atomic # 8 Polarization: -38.60 SS G_CDS: -0.09 Total: -38.69 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 1.90 Total: 46.91 kcal Atomic # 16 Polarization: -9.00 SS G_CDS: -1.05 Total: -10.05 kcal Total: -82.62 -2.77 -85.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734153877.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.138 kcal (2) G-P(sol) polarization free energy of solvation -82.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds