Wall clock time and date at job start Wed Apr 1 2020 01:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46498 * 109.46906 * 2 1 4 4 C 1.34775 * 120.00121 * 180.02562 * 3 2 1 5 5 O 1.21275 * 119.99821 * 359.97438 * 4 3 2 6 6 C 1.50703 * 120.00006 * 180.02562 * 4 3 2 7 7 N 1.46907 * 109.46802 * 179.97438 * 6 4 3 8 8 C 1.46834 * 110.99922 * 293.95027 * 7 6 4 9 9 C 1.50142 * 110.27541 * 174.31717 * 8 7 6 10 10 C 1.29824 * 123.28229 * 342.94558 * 9 8 7 11 11 C 1.50708 * 118.55374 * 180.08961 * 10 9 8 12 12 N 1.46500 * 109.46854 * 95.00478 * 11 10 9 13 13 C 1.34772 * 119.99836 * 180.02562 * 12 11 10 14 14 O 1.21282 * 120.00524 * 359.97438 * 13 12 11 15 15 C 1.50708 * 120.00175 * 179.97438 * 13 12 11 16 16 S 1.80996 * 109.47150 * 180.02562 * 15 13 12 17 17 C 1.76197 * 99.99649 * 180.02562 * 16 15 13 18 18 H 1.07997 * 120.00305 * 0.02562 * 17 16 15 19 19 C 1.38798 * 119.99841 * 180.02562 * 17 16 15 20 20 N 1.31634 * 120.00377 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 120.00246 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46850 * 59.99640 * 21 19 17 23 23 H 1.48500 * 109.47224 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.46940 * 300.00064 * 21 19 17 25 25 C 1.50303 * 122.89556 * 0.37575 * 10 9 8 26 26 C 1.47236 * 111.00073 * 56.88475 * 7 6 4 27 27 H 1.09001 * 109.47447 * 59.99787 * 1 2 3 28 28 H 1.09005 * 109.46942 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47255 * 299.99294 * 1 2 3 30 30 H 1.09000 * 109.47115 * 240.00250 * 2 1 3 31 31 H 1.08994 * 109.47105 * 120.00297 * 2 1 3 32 32 H 0.97004 * 119.99771 * 0.02562 * 3 2 1 33 33 H 1.08995 * 109.47112 * 59.99824 * 6 4 3 34 34 H 1.09001 * 109.46832 * 299.99794 * 6 4 3 35 35 H 1.09003 * 109.34026 * 54.07411 * 8 7 6 36 36 H 1.09004 * 109.20884 * 294.47656 * 8 7 6 37 37 H 1.08003 * 118.36194 * 162.92870 * 9 8 7 38 38 H 1.08998 * 109.47134 * 215.00457 * 11 10 9 39 39 H 1.08998 * 109.47002 * 335.00605 * 11 10 9 40 40 H 0.97001 * 119.99848 * 359.97438 * 12 11 10 41 41 H 1.09001 * 109.46299 * 300.00283 * 15 13 12 42 42 H 1.09005 * 109.46701 * 59.99771 * 15 13 12 43 43 H 0.96993 * 120.00467 * 180.02562 * 20 19 17 44 44 H 1.09005 * 109.43619 * 103.57376 * 25 10 9 45 45 H 1.09001 * 109.43345 * 223.42680 * 25 10 9 46 46 H 1.09001 * 109.63673 * 287.49956 * 26 7 6 47 47 H 1.09002 * 109.63921 * 47.90301 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 3.3433 1.6276 -0.0005 5 8 4.1314 0.7058 -0.0005 6 6 3.8455 3.0484 0.0001 7 7 5.3146 3.0484 -0.0001 8 6 5.8409 2.4914 1.2524 9 6 7.3357 2.3707 1.1806 10 6 8.0008 2.4082 0.0663 11 6 9.5010 2.2745 0.1179 12 7 9.8744 0.8750 -0.1017 13 6 11.1733 0.5156 -0.0979 14 8 12.0331 1.3507 0.0867 15 6 11.5574 -0.9242 -0.3231 16 16 13.3591 -1.0850 -0.2598 17 6 13.5220 -2.8159 -0.5464 18 1 12.6418 -3.4239 -0.6947 19 6 14.7815 -3.3979 -0.5816 20 7 15.8544 -2.6568 -0.4013 21 14 14.9543 -5.2331 -0.8847 22 1 14.3643 -5.5745 -2.2040 23 1 16.3924 -5.6031 -0.8754 24 1 14.2435 -5.9803 0.1838 25 6 7.3410 2.5853 -1.2726 26 6 5.8422 2.2980 -1.1517 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.3878 2.1185 0.0004 33 1 3.4826 3.5617 0.8905 34 1 3.4817 3.5627 -0.8895 35 1 5.4069 1.5056 1.4196 36 1 5.5713 3.1493 2.0787 37 1 7.8853 2.2467 2.1020 38 1 9.9481 2.8958 -0.6582 39 1 9.8612 2.5978 1.0945 40 1 9.1866 0.2070 -0.2490 41 1 11.1100 -1.5452 0.4530 42 1 11.1974 -1.2477 -1.2998 43 1 16.7346 -3.0635 -0.4263 44 1 7.4872 3.6094 -1.6163 45 1 7.7857 1.8958 -1.9901 46 1 5.6853 1.2306 -0.9964 47 1 5.3309 2.6148 -2.0608 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734621206.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:11:32 Heat of formation + Delta-G solvation = -51.569075 kcal Electronic energy + Delta-G solvation = -26472.318831 eV Core-core repulsion = 22588.614235 eV Total energy + Delta-G solvation = -3883.704596 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.88810 -39.29106 -38.42128 -35.98980 -35.19052 -33.11069 -32.38154 -31.39849 -31.06472 -29.70742 -28.07193 -25.65715 -25.27930 -23.88663 -23.39676 -22.23757 -21.06281 -20.28016 -18.41597 -17.83907 -17.16469 -16.80583 -16.37111 -16.18343 -16.02754 -15.69328 -15.34124 -14.95847 -14.82784 -14.76036 -14.64253 -14.05599 -13.78724 -13.56606 -13.33405 -13.08621 -12.88922 -12.75622 -12.66081 -12.52296 -12.42916 -12.26121 -12.12302 -11.71090 -11.60674 -11.17772 -11.00147 -10.99820 -10.88907 -10.74614 -10.63830 -9.78013 -9.63692 -9.47319 -9.01801 -8.96090 -8.77016 -8.49433 -8.18174 -6.44515 -6.16911 -3.87073 1.92292 2.09560 2.66150 3.17182 3.19408 3.26963 3.31161 3.40171 3.47984 3.93154 4.22426 4.25132 4.44935 4.46853 4.48646 4.52716 4.71840 4.75358 4.88738 5.01732 5.08704 5.17878 5.22903 5.24385 5.31461 5.33257 5.41724 5.42815 5.45940 5.59714 5.65813 5.67165 5.76031 5.87323 5.91976 5.97167 6.04043 6.14811 6.21678 6.58691 6.62672 6.70717 6.83291 6.94615 7.63954 7.70187 7.83041 8.39818 8.71029 9.28122 10.90460 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015079 B = 0.001856 C = 0.001688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.424513 B =15078.845075 C =16580.352254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.111 3.889 3 N -0.732 5.732 4 C 0.477 3.523 5 O -0.531 6.531 6 C 0.033 3.967 7 N -0.507 5.507 8 C 0.071 3.929 9 C -0.133 4.133 10 C -0.130 4.130 11 C 0.157 3.843 12 N -0.734 5.734 13 C 0.531 3.469 14 O -0.520 6.520 15 C -0.153 4.153 16 S -0.060 6.060 17 C -0.535 4.535 18 H 0.072 0.928 19 C 0.073 3.927 20 N -0.868 5.868 21 Si 0.918 3.082 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C -0.076 4.076 26 C 0.034 3.966 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.400 0.600 33 H 0.106 0.894 34 H 0.108 0.892 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.114 0.886 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.398 0.602 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.268 0.732 44 H 0.079 0.921 45 H 0.077 0.923 46 H 0.079 0.921 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.154 12.037 0.706 37.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.013 4.013 3 N -0.386 5.386 4 C 0.262 3.738 5 O -0.408 6.408 6 C -0.099 4.099 7 N -0.229 5.229 8 C -0.056 4.056 9 C -0.152 4.152 10 C -0.131 4.131 11 C 0.033 3.967 12 N -0.388 5.388 13 C 0.317 3.683 14 O -0.394 6.394 15 C -0.303 4.303 16 S 0.167 5.833 17 C -0.684 4.684 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.200 1.200 23 H -0.208 1.208 24 H -0.200 1.200 25 C -0.113 4.113 26 C -0.093 4.093 27 H 0.080 0.920 28 H 0.093 0.907 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.234 0.766 33 H 0.124 0.876 34 H 0.126 0.874 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.132 0.868 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.232 0.768 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.078 0.922 44 H 0.097 0.903 45 H 0.095 0.905 46 H 0.097 0.903 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -32.738 13.278 0.986 35.342 hybrid contribution -1.910 -2.935 -0.365 3.520 sum -34.648 10.343 0.621 36.164 Atomic orbital electron populations 1.22005 0.94356 1.03414 1.02485 1.21313 0.94319 0.83147 1.02509 1.46302 1.07489 1.09007 1.75808 1.22349 0.82326 0.93336 0.75777 1.90672 1.54454 1.46836 1.48859 1.22394 0.90076 0.92166 1.05313 1.62888 1.03627 1.52687 1.03727 1.21164 0.92991 0.99803 0.91683 1.22115 0.94872 1.00136 0.98094 1.20980 0.94568 1.02075 0.95462 1.20264 0.90773 0.83549 1.02098 1.46066 1.07713 1.09446 1.75610 1.20318 0.81731 0.90569 0.75684 1.90697 1.48911 1.52538 1.47267 1.23534 1.07395 0.94741 1.04677 1.85372 0.92942 1.10926 1.94102 1.22839 0.95368 0.93297 1.56872 0.90997 1.24988 0.94797 0.99100 0.94693 1.70010 0.98105 1.35850 1.46367 0.86230 0.77263 0.83127 0.78907 1.19960 1.20825 1.19960 1.20462 0.93710 1.02467 0.94686 1.22545 0.94991 0.99310 0.92490 0.91953 0.90711 0.91953 0.91481 0.91492 0.76566 0.87600 0.87433 0.91061 0.90084 0.86779 0.91130 0.91286 0.76785 0.89282 0.89260 0.92168 0.90260 0.90462 0.90350 0.91182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.39 10.03 37.16 0.37 -0.02 16 2 C 0.11 0.55 6.39 -4.04 -0.03 0.52 16 3 N -0.73 -3.27 5.56 -60.30 -0.33 -3.61 16 4 C 0.48 3.39 7.15 -10.98 -0.08 3.31 16 5 O -0.53 -5.98 11.65 5.56 0.06 -5.91 16 6 C 0.03 0.17 5.84 -4.97 -0.03 0.14 16 7 N -0.51 -4.17 4.93 -237.56 -1.17 -5.34 16 8 C 0.07 0.64 5.41 -5.28 -0.03 0.61 16 9 C -0.13 -1.37 9.50 -35.97 -0.34 -1.71 16 10 C -0.13 -1.42 5.26 -100.92 -0.53 -1.95 16 11 C 0.16 2.08 5.72 -5.19 -0.03 2.05 16 12 N -0.73 -10.94 5.55 -61.47 -0.34 -11.28 16 13 C 0.53 10.55 7.85 -10.98 -0.09 10.46 16 14 O -0.52 -12.39 15.86 5.56 0.09 -12.30 16 15 C -0.15 -3.25 6.16 36.01 0.22 -3.03 16 16 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 17 C -0.54 -15.65 9.50 30.94 0.29 -15.36 16 18 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 19 C 0.07 2.14 5.49 -17.43 -0.10 2.04 16 20 N -0.87 -26.66 13.22 55.49 0.73 -25.92 16 21 Si 0.92 21.86 29.55 -169.99 -5.02 16.83 16 22 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 25 C -0.08 -0.74 6.04 -28.03 -0.17 -0.91 16 26 C 0.03 0.31 4.91 -3.59 -0.02 0.29 16 27 H 0.06 0.12 8.14 -51.93 -0.42 -0.31 16 28 H 0.07 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.06 0.12 8.14 -51.93 -0.42 -0.31 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.40 0.59 8.47 -40.82 -0.35 0.24 16 33 H 0.11 0.34 8.12 -51.93 -0.42 -0.08 16 34 H 0.11 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.76 5.79 -51.93 -0.30 0.46 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.11 1.15 7.81 -52.48 -0.41 0.74 16 38 H 0.07 0.98 8.12 -51.93 -0.42 0.56 16 39 H 0.07 0.97 7.85 -51.93 -0.41 0.56 16 40 H 0.40 5.07 8.46 -40.82 -0.35 4.72 16 41 H 0.09 1.76 8.14 -51.91 -0.42 1.34 16 42 H 0.09 1.76 8.14 -51.91 -0.42 1.34 16 43 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 44 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.08 0.90 5.52 -51.93 -0.29 0.61 16 47 H 0.07 0.56 8.06 -51.93 -0.42 0.14 16 LS Contribution 397.35 15.07 5.99 5.99 Total: -1.00 -37.34 397.35 -10.31 -47.65 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -7.55 Total: 1.33 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: -0.55 Total: -3.55 kcal Atomic # 7 Polarization: -45.04 SS G_CDS: -1.11 Total: -46.15 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: 0.15 Total: -18.21 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -37.34 -10.31 -47.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734621206.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.919 kcal (2) G-P(sol) polarization free energy of solvation -37.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds