Wall clock time and date at job start Wed Apr 1 2020 01:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46498 * 109.46906 * 2 1 4 4 C 1.34775 * 120.00121 * 180.02562 * 3 2 1 5 5 O 1.21275 * 119.99821 * 359.97438 * 4 3 2 6 6 C 1.50703 * 120.00006 * 180.02562 * 4 3 2 7 7 N 1.46907 * 109.46802 * 179.97438 * 6 4 3 8 8 C 1.46834 * 110.99922 * 293.95027 * 7 6 4 9 9 C 1.50142 * 110.27541 * 174.31717 * 8 7 6 10 10 C 1.29824 * 123.28229 * 342.94558 * 9 8 7 11 11 C 1.50708 * 118.55374 * 180.08961 * 10 9 8 12 12 N 1.46500 * 109.46854 * 95.00478 * 11 10 9 13 13 C 1.34772 * 119.99836 * 180.02562 * 12 11 10 14 14 O 1.21282 * 120.00524 * 359.97438 * 13 12 11 15 15 C 1.50708 * 120.00175 * 179.97438 * 13 12 11 16 16 S 1.80996 * 109.47150 * 180.02562 * 15 13 12 17 17 C 1.76197 * 99.99649 * 180.02562 * 16 15 13 18 18 H 1.07997 * 120.00305 * 0.02562 * 17 16 15 19 19 C 1.38798 * 119.99841 * 180.02562 * 17 16 15 20 20 N 1.31634 * 120.00377 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 120.00246 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46850 * 59.99640 * 21 19 17 23 23 H 1.48500 * 109.47224 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.46940 * 300.00064 * 21 19 17 25 25 C 1.50303 * 122.89556 * 0.37575 * 10 9 8 26 26 C 1.47236 * 111.00073 * 56.88475 * 7 6 4 27 27 H 1.09001 * 109.47447 * 59.99787 * 1 2 3 28 28 H 1.09005 * 109.46942 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47255 * 299.99294 * 1 2 3 30 30 H 1.09000 * 109.47115 * 240.00250 * 2 1 3 31 31 H 1.08994 * 109.47105 * 120.00297 * 2 1 3 32 32 H 0.97004 * 119.99771 * 0.02562 * 3 2 1 33 33 H 1.08995 * 109.47112 * 59.99824 * 6 4 3 34 34 H 1.09001 * 109.46832 * 299.99794 * 6 4 3 35 35 H 1.09003 * 109.34026 * 54.07411 * 8 7 6 36 36 H 1.09004 * 109.20884 * 294.47656 * 8 7 6 37 37 H 1.08003 * 118.36194 * 162.92870 * 9 8 7 38 38 H 1.08998 * 109.47134 * 215.00457 * 11 10 9 39 39 H 1.08998 * 109.47002 * 335.00605 * 11 10 9 40 40 H 0.97001 * 119.99848 * 359.97438 * 12 11 10 41 41 H 1.09001 * 109.46299 * 300.00283 * 15 13 12 42 42 H 1.09005 * 109.46701 * 59.99771 * 15 13 12 43 43 H 0.96993 * 120.00467 * 180.02562 * 20 19 17 44 44 H 1.09005 * 109.43619 * 103.57376 * 25 10 9 45 45 H 1.09001 * 109.43345 * 223.42680 * 25 10 9 46 46 H 1.09001 * 109.63673 * 287.49956 * 26 7 6 47 47 H 1.09002 * 109.63921 * 47.90301 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 3.3433 1.6276 -0.0005 5 8 4.1314 0.7058 -0.0005 6 6 3.8455 3.0484 0.0001 7 7 5.3146 3.0484 -0.0001 8 6 5.8409 2.4914 1.2524 9 6 7.3357 2.3707 1.1806 10 6 8.0008 2.4082 0.0663 11 6 9.5010 2.2745 0.1179 12 7 9.8744 0.8750 -0.1017 13 6 11.1733 0.5156 -0.0979 14 8 12.0331 1.3507 0.0867 15 6 11.5574 -0.9242 -0.3231 16 16 13.3591 -1.0850 -0.2598 17 6 13.5220 -2.8159 -0.5464 18 1 12.6418 -3.4239 -0.6947 19 6 14.7815 -3.3979 -0.5816 20 7 15.8544 -2.6568 -0.4013 21 14 14.9543 -5.2331 -0.8847 22 1 14.3643 -5.5745 -2.2040 23 1 16.3924 -5.6031 -0.8754 24 1 14.2435 -5.9803 0.1838 25 6 7.3410 2.5853 -1.2726 26 6 5.8422 2.2980 -1.1517 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.3878 2.1185 0.0004 33 1 3.4826 3.5617 0.8905 34 1 3.4817 3.5627 -0.8895 35 1 5.4069 1.5056 1.4196 36 1 5.5713 3.1493 2.0787 37 1 7.8853 2.2467 2.1020 38 1 9.9481 2.8958 -0.6582 39 1 9.8612 2.5978 1.0945 40 1 9.1866 0.2070 -0.2490 41 1 11.1100 -1.5452 0.4530 42 1 11.1974 -1.2477 -1.2998 43 1 16.7346 -3.0635 -0.4263 44 1 7.4872 3.6094 -1.6163 45 1 7.7857 1.8958 -1.9901 46 1 5.6853 1.2306 -0.9964 47 1 5.3309 2.6148 -2.0608 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734621206.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:11:31 Heat of formation + Delta-G solvation = -80.955354 kcal Electronic energy + Delta-G solvation = -26473.593116 eV Core-core repulsion = 22588.614235 eV Total energy + Delta-G solvation = -3884.978881 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.49145 -40.67333 -39.29083 -36.71516 -36.02887 -34.59526 -34.19897 -31.95465 -31.76804 -31.09012 -28.95127 -27.68299 -26.32992 -24.66458 -23.89460 -22.92377 -21.81336 -21.56856 -19.93838 -19.03109 -18.02623 -17.72126 -17.51191 -17.03696 -16.91313 -16.88250 -16.57692 -16.24410 -16.02752 -15.86442 -15.47642 -15.17083 -14.82385 -14.73083 -14.52448 -14.29071 -14.00252 -13.72391 -13.41375 -13.34083 -13.18414 -13.17868 -12.89057 -12.83102 -12.71640 -12.65559 -12.54268 -12.24656 -11.91655 -11.76240 -11.53379 -11.41438 -11.13821 -11.06825 -10.30373 -10.15630 -10.11659 -9.84854 -9.16099 -8.67966 -8.35121 -6.13723 0.97765 1.29703 1.43214 1.47455 1.58066 1.58359 1.59237 2.26498 2.26514 2.45130 2.89096 2.98528 3.31750 3.58149 3.77789 3.87345 3.96817 4.11631 4.14921 4.19674 4.25150 4.28146 4.40120 4.48164 4.48894 4.49482 4.55418 4.64176 4.66803 4.77031 4.80018 4.91911 4.93085 5.00257 5.03163 5.21146 5.24061 5.35375 5.39568 5.40676 5.52902 5.87033 5.94373 6.05526 6.18895 6.46412 6.56652 7.05604 7.19758 7.26863 8.73918 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015079 B = 0.001856 C = 0.001688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.424513 B =15078.845075 C =16580.352254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.110 3.890 3 N -0.718 5.718 4 C 0.472 3.528 5 O -0.578 6.578 6 C 0.034 3.966 7 N -0.510 5.510 8 C 0.074 3.926 9 C -0.127 4.127 10 C -0.136 4.136 11 C 0.159 3.841 12 N -0.709 5.709 13 C 0.534 3.466 14 O -0.565 6.565 15 C -0.130 4.130 16 S -0.147 6.147 17 C -0.549 4.549 18 H 0.082 0.918 19 C 0.014 3.986 20 N -0.910 5.910 21 Si 0.999 3.001 22 H -0.262 1.262 23 H -0.277 1.277 24 H -0.263 1.263 25 C -0.074 4.074 26 C 0.040 3.960 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.417 0.583 33 H 0.132 0.868 34 H 0.133 0.867 35 H 0.057 0.943 36 H 0.100 0.900 37 H 0.115 0.885 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.412 0.588 41 H 0.107 0.893 42 H 0.109 0.891 43 H 0.272 0.728 44 H 0.084 0.916 45 H 0.073 0.927 46 H 0.056 0.944 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -38.359 11.936 0.472 40.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.014 4.014 3 N -0.372 5.372 4 C 0.259 3.741 5 O -0.458 6.458 6 C -0.097 4.097 7 N -0.232 5.232 8 C -0.053 4.053 9 C -0.147 4.147 10 C -0.137 4.137 11 C 0.036 3.964 12 N -0.363 5.363 13 C 0.320 3.680 14 O -0.443 6.443 15 C -0.281 4.281 16 S 0.080 5.920 17 C -0.697 4.697 18 H 0.100 0.900 19 C -0.191 4.191 20 N -0.547 5.547 21 Si 0.821 3.179 22 H -0.187 1.187 23 H -0.202 1.202 24 H -0.187 1.187 25 C -0.111 4.111 26 C -0.087 4.087 27 H 0.090 0.910 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.254 0.746 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.075 0.925 36 H 0.118 0.882 37 H 0.133 0.867 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.248 0.752 41 H 0.125 0.875 42 H 0.127 0.873 43 H 0.081 0.919 44 H 0.103 0.897 45 H 0.091 0.909 46 H 0.074 0.926 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -36.050 13.205 0.750 38.400 hybrid contribution -1.079 -2.819 -0.255 3.029 sum -37.129 10.386 0.495 38.557 Atomic orbital electron populations 1.21944 0.92045 1.03927 1.03406 1.21284 0.96121 0.83149 1.00875 1.46200 1.07171 1.09473 1.74406 1.22709 0.82669 0.93684 0.75038 1.90666 1.55731 1.48264 1.51174 1.22585 0.88127 0.91190 1.07780 1.62898 1.05565 1.51910 1.02838 1.21139 0.91741 0.99580 0.92876 1.22322 0.95954 0.98539 0.97873 1.20844 0.92878 1.03534 0.96447 1.20327 0.92593 0.81988 1.01493 1.45866 1.06208 1.10785 1.73398 1.20081 0.82834 0.89534 0.75586 1.90685 1.50517 1.53351 1.49797 1.23376 1.01923 0.96373 1.06423 1.85534 1.00011 1.11998 1.94484 1.23176 0.96161 0.93285 1.57083 0.90033 1.26138 0.94210 1.04802 0.93961 1.70174 0.98776 1.38340 1.47371 0.84998 0.77584 0.75982 0.79385 1.18679 1.20198 1.18713 1.20454 0.94217 1.02655 0.93800 1.22421 0.94617 0.98146 0.93545 0.90984 0.90472 0.90969 0.93191 0.93192 0.74552 0.85005 0.84968 0.92527 0.88177 0.86743 0.91691 0.91932 0.75169 0.87461 0.87327 0.91933 0.89740 0.90856 0.92624 0.89858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.46 10.03 71.98 0.72 0.26 16 2 C 0.11 1.01 6.39 86.38 0.55 1.57 16 3 N -0.72 -5.16 5.56 -463.08 -2.57 -7.73 16 4 C 0.47 6.01 7.15 87.66 0.63 6.63 16 5 O -0.58 -12.90 11.65 -3.01 -0.04 -12.93 16 6 C 0.03 0.26 5.84 85.56 0.50 0.76 16 7 N -0.51 -7.27 4.93 -905.50 -4.47 -11.74 16 8 C 0.07 1.21 5.41 85.39 0.46 1.67 16 9 C -0.13 -2.49 9.50 26.68 0.25 -2.23 16 10 C -0.14 -2.85 5.26 -15.40 -0.08 -2.93 16 11 C 0.16 4.17 5.72 85.64 0.49 4.66 16 12 N -0.71 -20.68 5.55 -466.78 -2.59 -23.27 16 13 C 0.53 21.25 7.85 87.66 0.69 21.94 16 14 O -0.57 -27.63 15.86 -3.03 -0.05 -27.68 16 15 C -0.13 -5.48 6.16 71.24 0.44 -5.05 16 16 S -0.15 -8.48 20.57 -56.49 -1.16 -9.64 16 17 C -0.55 -32.30 9.50 67.95 0.65 -31.66 16 18 H 0.08 4.46 7.80 -2.91 -0.02 4.44 16 19 C 0.01 0.80 5.49 84.86 0.47 1.27 16 20 N -0.91 -56.97 13.22 21.65 0.29 -56.68 16 21 Si 1.00 44.58 29.55 68.60 2.03 46.61 16 22 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 23 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 24 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 25 C -0.07 -1.36 6.04 29.75 0.18 -1.18 16 26 C 0.04 0.69 4.91 86.27 0.42 1.11 16 27 H 0.07 0.10 8.14 -2.39 -0.02 0.08 16 28 H 0.08 0.22 8.14 -2.38 -0.02 0.20 16 29 H 0.07 0.10 8.14 -2.39 -0.02 0.08 16 30 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.42 0.06 8.47 -92.71 -0.79 -0.72 16 33 H 0.13 0.34 8.12 -2.39 -0.02 0.32 16 34 H 0.13 0.38 8.14 -2.39 -0.02 0.36 16 35 H 0.06 1.16 5.79 -2.39 -0.01 1.15 16 36 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 37 H 0.11 2.19 7.81 -2.91 -0.02 2.17 16 38 H 0.06 1.81 8.12 -2.39 -0.02 1.79 16 39 H 0.06 1.75 7.85 -2.39 -0.02 1.73 16 40 H 0.41 9.94 8.46 -92.71 -0.78 9.16 16 41 H 0.11 4.14 8.14 -2.40 -0.02 4.12 16 42 H 0.11 4.17 8.14 -2.39 -0.02 4.15 16 43 H 0.27 15.78 8.31 -92.71 -0.77 15.00 16 44 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 45 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 46 H 0.06 1.26 5.52 -2.39 -0.01 1.24 16 47 H 0.08 1.17 8.06 -2.39 -0.02 1.16 16 Total: -1.00 -83.85 397.35 -2.78 -86.63 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: -0.58 Total: 19.61 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: 6.37 Total: -3.18 kcal Atomic # 7 Polarization: -90.08 SS G_CDS: -9.34 Total: -99.42 kcal Atomic # 8 Polarization: -40.52 SS G_CDS: -0.08 Total: -40.61 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Atomic # 16 Polarization: -8.48 SS G_CDS: -1.16 Total: -9.64 kcal Total: -83.85 -2.78 -86.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734621206.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.672 kcal (2) G-P(sol) polarization free energy of solvation -83.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds