Wall clock time and date at job start Wed Apr 1 2020 01:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46849 * 110.99930 * 2 1 4 4 C 1.53039 * 109.52423 * 185.84087 * 3 2 1 5 5 C 1.53116 * 109.27543 * 300.82421 * 4 3 2 6 6 C 1.50705 * 109.52234 * 177.56054 * 5 4 3 7 7 O 1.21281 * 119.99554 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00221 * 180.02562 * 6 5 4 9 9 C 1.47582 * 134.48994 * 180.02562 * 8 6 5 10 10 C 1.53950 * 86.11527 * 155.35548 * 9 8 6 11 11 N 1.46503 * 113.74313 * 269.15304 * 10 9 8 12 12 C 1.34768 * 120.00164 * 203.07427 * 11 10 9 13 13 O 1.21280 * 120.00276 * 0.02562 * 12 11 10 14 14 C 1.50698 * 120.00045 * 179.97438 * 12 11 10 15 15 S 1.81001 * 109.47279 * 180.02562 * 14 12 11 16 16 C 1.76202 * 100.00203 * 179.97438 * 15 14 12 17 17 H 1.08000 * 119.99678 * 0.02562 * 16 15 14 18 18 C 1.38800 * 120.00162 * 179.97438 * 16 15 14 19 19 N 1.31635 * 119.99674 * 0.02562 * 18 16 15 20 20 Si 1.86791 * 120.00098 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47295 * 60.00169 * 20 18 16 22 22 H 1.48495 * 109.47372 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47431 * 300.00423 * 20 18 16 24 24 C 1.47805 * 134.45584 * 359.86265 * 8 6 5 25 25 C 1.53119 * 109.16518 * 57.65387 * 5 4 3 26 26 C 1.46847 * 111.00301 * 124.21281 * 2 1 3 27 27 H 1.09000 * 109.47277 * 59.99983 * 1 2 3 28 28 H 1.09005 * 109.47289 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47012 * 299.99431 * 1 2 3 30 30 H 1.09001 * 109.46011 * 65.82963 * 3 2 1 31 31 H 1.09003 * 109.46384 * 305.85690 * 3 2 1 32 32 H 1.08994 * 109.50162 * 180.88248 * 4 3 2 33 33 H 1.09000 * 109.49966 * 60.76115 * 4 3 2 34 34 H 1.09000 * 109.52486 * 297.68377 * 5 4 3 35 35 H 1.08999 * 113.77186 * 41.05506 * 9 8 6 36 36 H 1.09004 * 113.76624 * 269.64983 * 9 8 6 37 37 H 1.09002 * 113.74276 * 137.95197 * 10 9 8 38 38 H 0.97006 * 119.99523 * 23.07305 * 11 10 9 39 39 H 1.09004 * 109.46895 * 299.99896 * 14 12 11 40 40 H 1.08997 * 109.47176 * 60.00031 * 14 12 11 41 41 H 0.96996 * 119.99559 * 179.97438 * 19 18 16 42 42 H 1.08999 * 113.77157 * 90.38364 * 24 8 6 43 43 H 1.09002 * 113.84143 * 318.91627 * 24 8 6 44 44 H 1.09007 * 109.49952 * 62.28557 * 25 5 4 45 45 H 1.08999 * 109.50558 * 182.39904 * 25 5 4 46 46 H 1.08994 * 109.46273 * 294.17601 * 26 2 1 47 47 H 1.08999 * 109.45926 * 54.14294 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5181 1.3342 -0.1468 5 6 4.1187 0.5370 1.0143 6 6 5.6133 0.4463 0.8430 7 8 6.1467 0.9674 -0.1135 8 7 6.3569 -0.2145 1.7522 9 6 7.7978 -0.4963 1.9020 10 6 7.5078 -0.6331 3.4077 11 7 7.6546 0.6196 4.1529 12 6 7.8944 0.5909 5.4788 13 8 7.9890 -0.4721 6.0551 14 6 8.0460 1.8795 6.2452 15 16 8.3588 1.5109 7.9895 16 6 8.4916 3.1474 8.6290 17 1 8.3802 3.9955 7.9697 18 6 8.7384 3.3465 9.9803 19 7 8.8737 2.3128 10.7840 20 14 8.8785 5.0814 10.6585 21 1 7.6092 5.8124 10.4141 22 1 9.1430 5.0223 12.1185 23 1 9.9952 5.7888 9.9818 24 6 6.0563 -0.9455 3.0013 25 6 3.5181 -0.8715 1.0207 26 6 1.9953 -0.7708 1.1337 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.7325 1.8608 0.9376 31 1 1.5633 1.9258 -0.8330 32 1 3.9098 2.3513 -0.1310 33 1 3.7812 0.8568 -1.0907 34 1 3.8896 1.0360 1.9559 35 1 8.4391 0.3493 1.6531 36 1 8.1151 -1.4260 1.4295 37 1 8.0216 -1.4708 3.8793 38 1 7.5793 1.4698 3.6919 39 1 8.8826 2.4478 5.8386 40 1 7.1312 2.4653 6.1557 41 1 9.0465 2.4519 11.7282 42 1 5.8606 -2.0074 2.8526 43 1 5.3100 -0.4578 3.6284 44 1 3.7814 -1.3836 0.0951 45 1 3.9099 -1.4303 1.8706 46 1 1.7325 -0.2710 2.0659 47 1 1.5634 -1.7716 1.1241 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001745823159.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:19:02 Heat of formation + Delta-G solvation = -61.549356 kcal Electronic energy + Delta-G solvation = -27124.888981 eV Core-core repulsion = 23240.751607 eV Total energy + Delta-G solvation = -3884.137373 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.86833 -40.63618 -39.55676 -38.55843 -34.87131 -34.58576 -34.48989 -31.96460 -31.26509 -29.72974 -27.91884 -27.62688 -27.15391 -24.47318 -24.10423 -22.83466 -21.77902 -20.90219 -19.97933 -19.83920 -18.22620 -17.95593 -17.32644 -17.20691 -16.87393 -16.73499 -16.35401 -16.20991 -16.06386 -15.80359 -15.45944 -15.01578 -14.74953 -14.58620 -14.43760 -14.19429 -14.05120 -13.76273 -13.48190 -13.40415 -13.30982 -13.16763 -12.97576 -12.87123 -12.63269 -12.54859 -12.36122 -12.23680 -12.09663 -11.74995 -11.73503 -11.45991 -11.12972 -11.02487 -10.74071 -10.28434 -10.19889 -9.79938 -9.30906 -8.65306 -8.34674 -6.11877 1.25942 1.43337 1.45840 1.52577 1.55669 1.55920 1.75629 2.18421 2.27915 2.96011 2.99440 3.21096 3.30542 3.44779 3.63760 3.74651 3.85616 3.93338 4.10288 4.13299 4.27353 4.29856 4.31002 4.42078 4.44493 4.51494 4.52587 4.54593 4.57275 4.61150 4.67194 4.70702 4.79287 4.80649 4.86380 4.92984 5.03560 5.05062 5.11722 5.29837 5.42003 5.45869 6.08743 6.10502 6.19661 6.39907 6.59582 7.06734 7.07023 7.17997 8.73998 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014346 B = 0.002112 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.326433 B =13255.191559 C =14089.690657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.559 5.559 3 C 0.059 3.941 4 C -0.092 4.092 5 C -0.099 4.099 6 C 0.539 3.461 7 O -0.584 6.584 8 N -0.644 5.644 9 C 0.104 3.896 10 C 0.106 3.894 11 N -0.699 5.699 12 C 0.544 3.456 13 O -0.553 6.553 14 C -0.133 4.133 15 S -0.142 6.142 16 C -0.549 4.549 17 H 0.081 0.919 18 C 0.015 3.985 19 N -0.909 5.909 20 Si 0.995 3.005 21 H -0.263 1.263 22 H -0.279 1.279 23 H -0.264 1.264 24 C 0.095 3.905 25 C -0.100 4.100 26 C 0.057 3.943 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.027 0.973 30 H 0.038 0.962 31 H 0.084 0.916 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.101 0.899 35 H 0.082 0.918 36 H 0.124 0.876 37 H 0.120 0.880 38 H 0.412 0.588 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.271 0.729 42 H 0.128 0.872 43 H 0.089 0.911 44 H 0.065 0.935 45 H 0.089 0.911 46 H 0.039 0.961 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.212 -5.867 -23.121 27.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.284 5.284 3 C -0.069 4.069 4 C -0.130 4.130 5 C -0.120 4.120 6 C 0.330 3.670 7 O -0.465 6.465 8 N -0.379 5.379 9 C -0.018 4.018 10 C 0.000 4.000 11 N -0.352 5.352 12 C 0.330 3.670 13 O -0.430 6.430 14 C -0.284 4.284 15 S 0.085 5.915 16 C -0.697 4.697 17 H 0.099 0.901 18 C -0.190 4.190 19 N -0.545 5.545 20 Si 0.817 3.183 21 H -0.187 1.187 22 H -0.204 1.204 23 H -0.188 1.188 24 C -0.028 4.028 25 C -0.138 4.138 26 C -0.071 4.071 27 H 0.091 0.909 28 H 0.095 0.905 29 H 0.046 0.954 30 H 0.056 0.944 31 H 0.103 0.897 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.119 0.881 35 H 0.101 0.899 36 H 0.142 0.858 37 H 0.138 0.862 38 H 0.248 0.752 39 H 0.125 0.875 40 H 0.126 0.874 41 H 0.080 0.920 42 H 0.146 0.854 43 H 0.108 0.892 44 H 0.084 0.916 45 H 0.107 0.893 46 H 0.057 0.943 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -13.713 -7.544 -23.076 27.883 hybrid contribution -0.117 2.916 0.459 2.954 sum -13.829 -4.629 -22.617 26.911 Atomic orbital electron populations 1.22387 0.86038 1.02809 1.01062 1.61949 1.08759 1.13852 1.43881 1.22084 0.94211 0.89380 1.01196 1.21336 0.94434 0.99832 0.97447 1.21343 0.89437 0.99697 1.01570 1.20703 0.89544 0.76804 0.79956 1.90689 1.74718 1.49161 1.31891 1.50249 1.09580 1.52897 1.25198 1.23671 0.82573 1.03390 0.92183 1.22515 0.97368 0.88319 0.91821 1.45443 1.73122 1.09731 1.06853 1.19921 0.74848 0.89853 0.82364 1.90703 1.50392 1.32702 1.69248 1.23387 1.06395 0.98971 0.99695 1.85482 1.93818 1.12680 0.99487 1.23170 1.56914 0.92495 0.97071 0.90124 1.26081 0.93890 1.02882 0.96171 1.70162 1.46534 1.32475 1.05374 0.85047 0.79341 0.76831 0.77067 1.18749 1.20364 1.18836 1.24016 0.97666 0.99135 0.82022 1.21560 0.95116 0.93857 1.03271 1.22113 0.94371 0.99150 0.91468 0.90862 0.90511 0.95397 0.94362 0.89743 0.91536 0.92084 0.88051 0.89922 0.85815 0.86223 0.75199 0.87520 0.87428 0.91971 0.85419 0.89245 0.91643 0.89298 0.94272 0.89147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.59 127.69 1.22 1.48 16 2 N -0.56 -7.67 4.91 -922.61 -4.53 -12.20 16 3 C 0.06 0.83 5.46 86.33 0.47 1.30 16 4 C -0.09 -1.60 4.68 30.65 0.14 -1.46 16 5 C -0.10 -1.59 2.42 -11.46 -0.03 -1.62 16 6 C 0.54 11.31 7.39 87.66 0.65 11.96 16 7 O -0.58 -17.17 16.70 -3.03 -0.05 -17.22 16 8 N -0.64 -10.48 3.57 -836.52 -2.99 -13.47 16 9 C 0.10 1.49 8.58 86.49 0.74 2.23 16 10 C 0.11 1.78 4.40 46.74 0.21 1.98 16 11 N -0.70 -15.27 5.37 -447.41 -2.40 -17.67 16 12 C 0.54 17.87 7.85 87.66 0.69 18.55 16 13 O -0.55 -22.69 15.48 -3.03 -0.05 -22.74 16 14 C -0.13 -4.97 6.16 71.24 0.44 -4.53 16 15 S -0.14 -7.57 20.57 -56.49 -1.16 -8.73 16 16 C -0.55 -30.67 9.50 67.95 0.65 -30.03 16 17 H 0.08 4.20 7.80 -2.91 -0.02 4.18 16 18 C 0.01 0.83 5.49 84.86 0.47 1.30 16 19 N -0.91 -54.78 13.22 21.65 0.29 -54.50 16 20 Si 1.00 42.95 29.55 68.60 2.03 44.98 16 21 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 22 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 23 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 24 C 0.09 1.20 6.74 86.44 0.58 1.79 16 25 C -0.10 -1.26 5.23 30.64 0.16 -1.10 16 26 C 0.06 0.66 5.46 86.32 0.47 1.14 16 27 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.08 0.66 8.09 -2.38 -0.02 0.64 16 29 H 0.03 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.08 1.07 8.12 -2.39 -0.02 1.05 16 32 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.06 1.28 8.04 -2.39 -0.02 1.26 16 34 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.12 2.18 7.51 -2.39 -0.02 2.16 16 38 H 0.41 7.57 8.74 -92.70 -0.81 6.76 16 39 H 0.11 3.65 8.14 -2.39 -0.02 3.63 16 40 H 0.11 3.63 8.14 -2.40 -0.02 3.62 16 41 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 42 H 0.13 0.97 8.01 -2.39 -0.02 0.95 16 43 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.06 0.99 8.14 -2.38 -0.02 0.98 16 45 H 0.09 0.85 6.27 -2.39 -0.01 0.83 16 46 H 0.04 0.45 8.14 -2.39 -0.02 0.43 16 47 H 0.09 0.87 8.09 -2.39 -0.02 0.85 16 Total: -1.00 -78.38 396.34 -1.85 -80.23 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: 0.15 Total: 18.33 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: 6.86 Total: 2.98 kcal Atomic # 7 Polarization: -88.19 SS G_CDS: -9.64 Total: -97.83 kcal Atomic # 8 Polarization: -39.86 SS G_CDS: -0.10 Total: -39.96 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Atomic # 16 Polarization: -7.57 SS G_CDS: -1.16 Total: -8.73 kcal Total: -78.38 -1.85 -80.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001745823159.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.682 kcal (2) G-P(sol) polarization free energy of solvation -78.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds